mRNA_P-littoralis_Contig190.125.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig190.125.1 vs. uniprot
Match: A0A6H5KNH6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH6_9PHAE) HSP 1 Score: 119 bits (297), Expect = 2.150e-27 Identity = 78/214 (36.45%), Postives = 124/214 (57.94%), Query Frame = 3
Query: 18 CAAGELCHLSDRNITPE------LSCCGPRGGRLHRICGEIQNPGGDEEVNRICQSCAAANESASSTNTRTNTHSNAAKRTEGGGILQQSAPKKRKGEK-----RNRLTLGQKREILQLLDQKVSRTEIMRRFNCGRSTVGDIRKDRATLQENAASTSWSETSKSRKGGDFPKVDSLVMTMIEDARKLRIPVTGATIEAYGVAAKKKLVAEAST 626
CA ELC L +R + + L C GGRLH ICGE + GG +E++R+C C A + ++ + S ++ G +++ P + K R RL GQ+ E+L+LLD+K + EI RR++ S + I+ R L++ AA+ + S TSKS + GDFP+++ V+ +IE+AR++ +P+T ATIE++G+A + KLVA ST
Sbjct: 4 CADQELCKLPNRPLGEKDGHECRLGC----GGRLHGICGEPEEEGG-QEIHRVCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPELEKDVLALIEEARRVPLPITRATIESFGIAVRDKLVAAPST 212
BLAST of mRNA_P-littoralis_Contig190.125.1 vs. uniprot
Match: A0A6H5L4Y6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y6_9PHAE) HSP 1 Score: 114 bits (284), Expect = 7.180e-27 Identity = 74/208 (35.58%), Postives = 120/208 (57.69%), Query Frame = 3
Query: 18 CAAGELCHLSDRNITPE------LSCCGPRGGRLHRICGEIQNPGGDEEVNRICQSCAAANESASSTNTRTNTHSNAAKRTEGGGILQQSAPKKRKGEK-----RNRLTLGQKREILQLLDQKVSRTEIMRRFNCGRSTVGDIRKDRATLQENAASTSWSETSKSRKGGDFPKVDSLVMTMIEDARKLRIPVTGATIEAYGVAAKKKL 608
CA ELC L +R + + L C GGRLH ICGE + GG +E++R+C C A + ++ + S ++ G +++ P + K R RL GQ+ E+L+LLD+K + EI RR++ S + I+ R L++ AA+ + S TSKS + GDFP+++ V+ +IE+AR++ +P+T ATIE++G+A + KL
Sbjct: 4 CADQELCKLPNRPLGEKDGHECRLGC----GGRLHGICGEPEEEGG-QEIHRVCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPELEKDVLALIEEARRVPLPITRATIESFGIAVRDKL 206
BLAST of mRNA_P-littoralis_Contig190.125.1 vs. uniprot
Match: A0A6H5KEK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK9_9PHAE) HSP 1 Score: 102 bits (253), Expect = 1.640e-21 Identity = 63/177 (35.59%), Postives = 106/177 (59.89%), Query Frame = 3
Query: 111 CGEIQNPGGDEEVNRICQSCAAANESASSTNTRTNTHSNAAKRTEGGGILQQSAPKKRKGEK-----RNRLTLGQKREILQLLDQKVSRTEIMRRFNCGRSTVGDIRKDRATLQENAASTSWSETSKSRKGGDFPKVDSLVMTMIEDARKLRIPVTGATIEAYGVAAKKKLVAEAST 626
CGE + GG +E++R+C C A + ++ + S ++ G +++ P + K R RL GQ+ E+L+LLD+K + EI RR++ S + I+ R L++ AA+ + S TSKS + GDFP+++ V+ +IE+AR++ +P+T ATIE++G+A + KLVA ST
Sbjct: 16 CGEPEEEGG-QEIHRVCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKTTHAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPELEKDVLALIEEARRVPLPITRATIESFGIAVRDKLVAAPST 191
BLAST of mRNA_P-littoralis_Contig190.125.1 vs. uniprot
Match: A0A6H5K1H9_9PHAE (HTH psq-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H9_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 4.910e-15 Identity = 67/176 (38.07%), Postives = 93/176 (52.84%), Query Frame = 3
Query: 12 MSCAAGELCHLSDRN-ITPE-LSCCGPRGGRLHRICGEIQNPGGDEEVNRICQSCAAANESASSTNTRTNTHSNAAKRTEGGGILQQSAPKKRKGE----KRNRLTLGQKREILQLLDQKVSRTE--IMRRFNCGRSTVGDIRKDRATLQENAASTSWSETS-KSRKGGDFPKVDS 512
M CAAGELC L D+ + P C G GGRLH +CGE Q+ + E RIC +C A+ + S+ +T TE G +Q K R R+ +G K EIL+LLD K +RT+ I +FNCG TV ++ +RA ++ AA T S T+ K+ + DFP+ S
Sbjct: 1 MPCAAGELCQLPDQTPVAPHGHQCHGGCGGRLHGLCGE-QDQDAEYETARICFACIASKQKGSNASTA-GKGKRKGSATESGDTARQKKTKPANHPDMTGSRTRMDIGTKMEILRLLD-KGTRTQKSIAEQFNCGERTVRTVKAERAKIENQAAKTRSSATTRKNLRAMDFPEESS 173
BLAST of mRNA_P-littoralis_Contig190.125.1 vs. uniprot
Match: A0A6H5KX95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX95_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 3.770e-12 Identity = 52/124 (41.94%), Postives = 72/124 (58.06%), Query Frame = 3
Query: 270 APKKR----KGEKRNRLTLGQKREILQLLDQK-VSRTEIMRRFNCGRSTVGDIRKDRATLQENAASTSWSETSKSRKGGDFPKVDSLVMTMIEDARKLRIPVTGATIEAYGVAAKKKLVAEAST 626
APK+R + + R RLTLGQK EIL LLDQK +SR EI + C TV +R L+ AAS++ SK R+ FP+VD V+++I+ +IPV TI ++G A K L+A +T
Sbjct: 125 APKRRACVDRSKPRARLTLGQKLEILDLLDQKKMSRVEIAAIYKCSDRTVSSCSVNRTILEAEAASSTRKLKSKGRRSAGFPEVDRRVLSLIKAFESSQIPVGRTTIASFGHAVKASLLAADAT 248 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig190.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig190.125.1 >prot_P-littoralis_Contig190.125.1 ID=prot_P-littoralis_Contig190.125.1|Name=mRNA_P-littoralis_Contig190.125.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=206bp MSCAAGELCHLSDRNITPELSCCGPRGGRLHRICGEIQNPGGDEEVNRICback to top mRNA from alignment at P-littoralis_Contig190:391761..392619+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig190.125.1 ID=mRNA_P-littoralis_Contig190.125.1|Name=mRNA_P-littoralis_Contig190.125.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=859bp|location=Sequence derived from alignment at P-littoralis_Contig190:391761..392619+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig190:391761..392619+ >mRNA_P-littoralis_Contig190.125.1 ID=mRNA_P-littoralis_Contig190.125.1|Name=mRNA_P-littoralis_Contig190.125.1|organism=Pylaiella littoralis U1_48|type=CDS|length=618bp|location=Sequence derived from alignment at P-littoralis_Contig190:391761..392619+ (Pylaiella littoralis U1_48)back to top |