mRNA_P-littoralis_Contig190.100.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig190.100.3 vs. uniprot
Match: A0A6H5KDB5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB5_9PHAE) HSP 1 Score: 435 bits (1118), Expect = 3.050e-129 Identity = 261/516 (50.58%), Postives = 330/516 (63.95%), Query Frame = 1
Query: 1708 ITCSAMEILSLTSSLFMAGSAMKRAFSKWKKSQGSDEPS-----TADDTNTEVSQGLECKSMEAAIIAVGSELAMKAYKAFASRSRRWRDRTITGLSPEFAANRNQTQPGGQELAVHQQSASQAIAEELVGVRSDLR----------------------------YGTDQLTRGMAAVRTDLGTVITEVDGIWN-TVRGVLEVNYAVLHGTTVVYRSLQDLQGEVAELQSSMDDAREENFQYFTTVSSKLSD-------LEAYIKSRDQQQNRSKLQRYLRKARMYLIDFTGSGGDDFGLLDKAKDSCFKILALQPHSDTLDAHFMAGSIAIATSYTKHAQQRPAPTAKEAVFNADFVNVTGSLESFWANLSAADTPTGRRVVEYLLSVASSICMLPPEGLLLPQLDARLVEAFGVRCCSQPSLLDKFPEVGGAAIRAVLQAKPIDDLCRISNLSEVDVSLCDKKADIIQALLDGGKPIDA------------CLIRQVDSTPGEVSSDDTAGYSD 3096
+ A + L S+LF AG +S ++ + D+ T+ D N EV GLEC ++E AI+AVG+ELAMKA++ F SR R R ITGLSPEFA +R Q Q G ELA Q SQA+AE + VR DLR YGTDQL +G+AAVRTDL TVI ++G+ V G+ EVN+ V GT V+YRSLQDL+ ++ ELQ SMD AREEN YF +SS+L+D LEA R+QQ+ SKLQ L +A +YL FTG+GG D GLLDKA C K+L L+PH DTLDAH MAG I +ATSY KHAQ +P TAK+ VF++DF+N+T L+ FWA+ +AA TPT VV YLL ++SSIC+LPPEGL+L +LD LVEAFG CCSQPSLLD+FPEVGGAA R++LQAKP+D+LCR SN +EVD+SLC+ KAD+IQALLD GKP+ A C R+ DS+ + +D + Y D
Sbjct: 289 VMAEAYLCIQLASALFFAGRWAANRYSAHRRRETVDDNKPGAGYTSVDINVEV--GLECDTVEGAIMAVGTELAMKAHRKFFG-SRTLRQRAITGLSPEFATHRRQMQLGLSELAARQGRTSQALAEGFLDVRGDLRDLXXXXXXXXXXXXXXXXXXXXXXNDFRYGTDQLVKGVAAVRTDLDTVIENMEGVREEVVTGLQEVNHTVRQGTAVIYRSLQDLRCDMGELQLSMDQAREENSHYFQDISSRLNDVKLGLIALEATYVMREQQKELSKLQNSLSEAGIYLNQFTGTGGGDLGLLDKAHTCCCKVLRLRPHLDTLDAHKMAGIIMVATSYRKHAQLKPPVTAKQYVFDSDFLNITNLLKPFWADHAAAHTPTWSNVVRYLLELSSSICLLPPEGLVLGELDPGLVEAFGELCCSQPSLLDRFPEVGGAAWRSLLQAKPLDELCRTSNAAEVDISLCNNKADLIQALLDAGKPLGALTQVIDNGGYKTCCHRKPDSSDEVIGNDRNSAYGD 801
BLAST of mRNA_P-littoralis_Contig190.100.3 vs. uniprot
Match: D7G6V2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6V2_ECTSI) HSP 1 Score: 395 bits (1016), Expect = 9.150e-121 Identity = 229/400 (57.25%), Postives = 289/400 (72.25%), Query Frame = 1
Query: 1915 MKAYKAFASRSRRWRDRTITGLSPEFAANRNQTQPGGQELAVHQQSASQAIAEELVGVRS-DLRYGTDQLTRGMAAVRTDLGTVITEVDGIWNTV-RGVLEVNYAVLHGTTVVYRSLQDLQGEVAELQSSMDDAREENFQYFTTVSSKLSDLEAYIKSRDQQQNRSKLQRYLRKARMYLIDFTGSGGDDFGLLDKAKDSCFKILALQPHSDTLDAHFMAGSIAIATSYTKHAQQRPAPTAKEAVFNADFVNVTGSLESFWANLSAADTPTGRRVVEYLLSVASSICMLPPEGLLLPQLDARLVEAFGVRCCSQPSLLDKFPEVGGAAIRAVLQAKPIDDLCRISNLSEVDVSLCDKKADIIQALLDGGK--PIDACLIRQVDSTPGEVSSDDTAGYSDED 3102
MKA+ + +R R+R I GLS EFA +R+Q + QQSASQAIAEELVG+ + DL+ TD+LTRG AAVRTDLGTV+ EVDGIWN+V G+LEVNYAV HGT V+YRSL+ L ++A L+S +D A+ EN + F VSS+L E Y++S QQQ+ LQR L+KARM LI+FTG+GG + LLD+AK+SC +IL +PHSD+L HF+AG IAIA S+TKHAQQ P AK VF+ F NV S ESFW + AA T G VVEYLLS+ SS+CMLPPEGLLLPQLD RLV+AFGV C S+PS+LD++PEVGGAA+RA+LQ+KP+D+LCR+S VD++LCD +AD+IQ +LD K P+DA + QV T SS D SD+D
Sbjct: 1 MKAHSGWIQ-ARMRRNRAIPGLSKEFAEHRSQARRDLAGNTTGQQSASQAIAEELVGIHAADLQ--TDKLTRGKAAVRTDLGTVM-EVDGIWNSVSNGLLEVNYAVRHGTAVIYRSLEGLHEDMASLRSCIDKAQRENSKCFQQVSSRLQAFEEYVRSHHQQQDGKSLQRSLKKARMCLIEFTGTGGGEPQLLDQAKESCMEILIREPHSDSLRVHFLAGCIAIAASFTKHAQQEPPARAKAYVFDGVFRNVMLSFESFWTDPCAARTRNGICVVEYLLSIVSSVCMLPPEGLLLPQLDDRLVKAFGVLCSSEPSILDRYPEVGGAAVRALLQSKPLDELCRMSKSLGVDIALCDNRADLIQGMLDKRKSIPVDAAM-DQVTKTNQRESSSDVDSNSDDD 395
BLAST of mRNA_P-littoralis_Contig190.100.3 vs. uniprot
Match: D7FKB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKB6_ECTSI) HSP 1 Score: 290 bits (741), Expect = 1.110e-82 Identity = 185/377 (49.07%), Postives = 234/377 (62.07%), Query Frame = 1
Query: 1732 LSLTSSLFMAGSAMKRAFSKWKKSQGSD-EPSTADDTNTEVSQ--GLECKSMEAAIIAVGSELAMKAYKAFASRSRRWRDRTITGLSPEFAANRNQTQPGGQELAVHQQSASQAIAEELVGVRSDLR----------------------------YGTDQLTRGMAAVRTDLGTVITEVDGIWN-TVRGVLEVNYAVLHGTTVVYRSLQDLQGEVAELQSSMDDAREENFQYFTTVSSKLSD-------LEAYIKSRDQQQNRSKLQRYLRKARMYLIDFTGSGGDDFGLLDKAKDSCFKILALQPHSDTLDAHFMAGSIAIATSYTKHAQQRPAPTAKEAVFNADFVNVTGSLESFWANLSAADTPTGRRVVEYLL 2745
+ L S+LF+AG + +S ++ + D A DT+ E++ G EC ++E AI+AVG+ELAMKA + F SR R R ITGLSPEFA +R Q Q G EL Q SQA+AE + VR D R YGTDQL +G+AAV TDL TVI V+G+ N V G+LEVN+ + GT V+YRSLQDL+ + ELQ SMD AREEN YF VSS+L+D LEA R+QQ+ SKLQ L +A MYL FTG+GG+D GLLDKA C K+L L+PH +TLDAH MAG I +ATSY KHAQ +P TAK+ VF++DF+N+T SL+ FWA+ +AA TPT VV YLL
Sbjct: 8 IQLASTLFLAGRWVANRYSARRRRETEDYNKPGAGDTSVEINVEFGPECDTVEGAIMAVGTELAMKAQRKFFG-SRTLRQRAITGLSPEFATHRRQMQLGLSELVARQGRTSQALAEGFLDVRGDFRDLXXXXXXXXXXXXXXXXXXXXXXXXXXYGTDQLIKGVAAVHTDLDTVIENVEGVRNEVVTGLLEVNHTLRQGTAVIYRSLQDLRCVMGELQLSMDQAREENSLYFQDVSSRLNDVKSGLIALEATYVMREQQKELSKLQNSLSEAGMYLNQFTGTGGEDLGLLDKAHTCCCKVLRLRPHLETLDAHKMAGIIMVATSYRKHAQLKPPATAKQYVFDSDFLNITNSLKHFWADHAAAHTPTWSNVVCYLL 383
BLAST of mRNA_P-littoralis_Contig190.100.3 vs. uniprot
Match: A0A6H5K3B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B9_9PHAE) HSP 1 Score: 124 bits (312), Expect = 2.320e-26 Identity = 79/247 (31.98%), Postives = 131/247 (53.04%), Query Frame = 1
Query: 2263 DLQGEVAELQSSMDDAREENFQYFTTVSSKLSDLEAYIKSRDQQQNRSKLQRYLRKARMYLIDFTGSGGDDFGLLDKAKDSCFKILALQPHSDTLDAHFMAGSIAIATSYTKHAQQRPAPTAKEAVFNADFVNVTGSLESFWANLSAADTPTGRRVVEYLLSVASSICMLPPEGL-LLPQLDARLVEAFGVRCCSQPSLLDKFPEVGGAAIRAVLQAKPIDDLCRISNLSEVDVSLCDKKADIIQAL 3000
+++ ++ +++S++ R EN +FTT +S +EA D +N L +A M L +F SG D +D+ K++ K TL+ F A +I I+ Y + AK+A NV + WA+ S + T R+V+ +LL+V S +C+LPPE + +LP+LD+RL+ AFG C S+P L +P+VGGAA++A+L+ K + L ++ DV+ C K +I+ L
Sbjct: 78 EVRRDLESVRASVEQCRAENMLFFTTF---MSSIEATQHGVDVLRNGP-----LEEAHMSLKEFEASGDD----VDELKEASRKARTALVTGSTLEIKFTAATITISAGYVHKMKAGSPSEAKQATVKGSLANVVKHFATIWADPSRSGTVEERKVLSFLLNVVSCVCVLPPENVPVLPELDSRLLPAFGALCASEPELRRLYPDVGGAAVKAMLEEKTMQSLFELATEVGADVTACTSKDGVIEIL 312
BLAST of mRNA_P-littoralis_Contig190.100.3 vs. uniprot
Match: A0A6H5K720_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K720_9PHAE) HSP 1 Score: 119 bits (298), Expect = 6.480e-24 Identity = 81/244 (33.20%), Postives = 127/244 (52.05%), Query Frame = 1
Query: 2293 SSMDDAREENFQYFTTVSSKLSDLEAYIKSRDQQQNRSKLQRYLRKARMYLIDFTGSGGDDFGLLDKAKDSCFKILALQPHSDTLDAHFMAGSIAIATSYTKHAQQRPAPTAKEAVFNADFVNVTGSLESFWANLSAADTPTGRRVVEYLLSVASSICMLPPEGL-LLPQLDARLVEAFGVRCCSQPSLLDKFPEVGGAAIRAVLQAKPIDDLCRISNLSEVDVSLCDKKADIIQALLDGGKPI 3021
+S+D+ R EN Q+F + + L I++ Q L L++A M L +FT S G LD+A+ L +Q H T+D A IA++ Y ++ AK+ N VN+ L W + S + G +V+ +LL++ S +C LPP +LP LD RL+ AFG C ++P + +PEVGG A RA+L + + DL +++ +VDV+ C K ++IQ LL GK +
Sbjct: 145 ASVDECRSENEQFFKSFTQGLEATHRGIQTLMAMQ----LSAPLKEAEMALKNFTASKGQ-VRFLDEARSKALTAL-VQGH--TVDVKLSAAVIAVSAGYVFASKTESPLEAKQFTVNGTLVNIVDVLAPLWVDSSRGASADGPKVLAFLLNLVSCVCALPPVAEPVLPDLDKRLLPAFGTLCATEPEIYRMYPEVGGVAARALLAIQTMRDLFELADEVDVDVAKCTSKDEVIQILLASGKAL 380
BLAST of mRNA_P-littoralis_Contig190.100.3 vs. uniprot
Match: D8LD84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD84_ECTSI) HSP 1 Score: 118 bits (295), Expect = 3.200e-23 Identity = 79/244 (32.38%), Postives = 128/244 (52.46%), Query Frame = 1
Query: 2293 SSMDDAREENFQYFTTVSSKLSDLEAYIKSRDQQQNRSKLQRYLRKARMYLIDFTGSGGDDFGLLDKAKDSCFKILALQPHSDTLDAHFMAGSIAIATSYTKHAQQRPAPTAKEAVFNADFVNVTGSLESFWANLSAADTPTGRRVVEYLLSVASSICMLPPEGL-LLPQLDARLVEAFGVRCCSQPSLLDKFPEVGGAAIRAVLQAKPIDDLCRISNLSEVDVSLCDKKADIIQALLDGGKPI 3021
+S+D+ R EN +F + + L+ I++ + L++A M L +FT SGG+ LD A L +Q H T+D A IA++ Y ++ AK+ N VN+ L W + S A + G +V+ +LL++ S +C LPP +LP LD RL+ AFG C ++P + +PE+GG A RA+L ++ + DL +++ +VDV+ C K ++IQ LL GK +
Sbjct: 261 ASVDECRSENELFFKSFTQGLAATHRGIETL--------MSAPLKEAEMALKNFTASGGN-VRFLDVAHSKAMTAL-VQGH--TVDVKLSAAVIAVSAGYVFASKTDSPLEAKQFTVNGTLVNIVDVLAPLWVDSSRAASADGPKVLAFLLNLVSCVCALPPVAEPVLPDLDKRLLPAFGTLCATEPGIYRMYPEIGGVAARALLASQTMRDLFELADEVDVDVARCTSKDEVIQILLGSGKAL 492 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig190.100.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig190.100.3 >prot_P-littoralis_Contig190.100.3 ID=prot_P-littoralis_Contig190.100.3|Name=mRNA_P-littoralis_Contig190.100.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=520bp MEILSLTSSLFMAGSAMKRAFSKWKKSQGSDEPSTADDTNTEVSQGLECKback to top mRNA from alignment at P-littoralis_Contig190:344106..350847- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig190.100.3 ID=mRNA_P-littoralis_Contig190.100.3|Name=mRNA_P-littoralis_Contig190.100.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=6742bp|location=Sequence derived from alignment at P-littoralis_Contig190:344106..350847- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig190:344106..350847- >mRNA_P-littoralis_Contig190.100.3 ID=mRNA_P-littoralis_Contig190.100.3|Name=mRNA_P-littoralis_Contig190.100.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1560bp|location=Sequence derived from alignment at P-littoralis_Contig190:344106..350847- (Pylaiella littoralis U1_48)back to top |