mRNA_P-littoralis_Contig19.96.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.96.1
Unique NamemRNA_P-littoralis_Contig19.96.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig19.96.1 vs. uniprot
Match: D7FLT8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT8_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 8.070e-42
Identity = 75/98 (76.53%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    1 MASALGRAVLVGARGVPVAAVNRRVCVAGARGRGLKTNPHVEEWMGKREISEKTFTFTPKISFGLLMTIVVFPALLYGNIKAGMQAKDAKQGLQREYF 294
            M+SALGRA+ VGARG P A   RRV    ARGRGLKTNPHVEEWMGKREISEKTFTFTPK+S GLLM IVVFP ++YGNIKAGM+ KDAK+G +REYF
Sbjct:    1 MSSALGRALSVGARGFPAAGAGRRVGEVAARGRGLKTNPHVEEWMGKREISEKTFTFTPKVSLGLLMAIVVFPVVVYGNIKAGMETKDAKEGRKREYF 98
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BLAST of mRNA_P-littoralis_Contig19.96.1 vs. uniprot
Match: A0A7S3UZX4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZX4_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 1.160e-11
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   97 RGLKTNPHVEEWMGKREISEKTFTFTPKISFGLLMTIVVFPALLYGNIKAGMQAKDAKQGLQREY 291
            RGLK N  VEEW GKREI+E+TFT+T + +  LLM + VFPA +Y   K  ++ +DA +G +REY
Sbjct:   39 RGLKKNAFVEEWNGKREITEQTFTYTGQTTRSLLMWMGVFPAFVYVMTKGELEKRDASKGKRREY 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLT8_ECTSI8.070e-4276.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3UZX4_HETAK1.160e-1152.31Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:443546..448176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1281
Hectar predicted targeting categorymitochondrion
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001290.1
Cds size297
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789910.1215546-UTR-P-littoralis_Contig19:443545..4445291680789910.1215546-UTR-P-littoralis_Contig19:443545..444529Pylaiella littoralis U1_48UTRP-littoralis_Contig19 443546..444529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789910.133881-CDS-P-littoralis_Contig19:444529..4447001680789910.133881-CDS-P-littoralis_Contig19:444529..444700Pylaiella littoralis U1_48CDSP-littoralis_Contig19 444530..444700 -
1680789910.1441786-CDS-P-littoralis_Contig19:448050..4481761680789910.1441786-CDS-P-littoralis_Contig19:448050..448176Pylaiella littoralis U1_48CDSP-littoralis_Contig19 448051..448176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.96.1prot_P-littoralis_Contig19.96.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 444530..448176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.96.1

>prot_P-littoralis_Contig19.96.1 ID=prot_P-littoralis_Contig19.96.1|Name=mRNA_P-littoralis_Contig19.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
MASALGRAVLVGARGVPVAAVNRRVCVAGARGRGLKTNPHVEEWMGKREI
SEKTFTFTPKISFGLLMTIVVFPALLYGNIKAGMQAKDAKQGLQREYF*
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mRNA from alignment at P-littoralis_Contig19:443546..448176-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.96.1 ID=mRNA_P-littoralis_Contig19.96.1|Name=mRNA_P-littoralis_Contig19.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4631bp|location=Sequence derived from alignment at P-littoralis_Contig19:443546..448176- (Pylaiella littoralis U1_48)
ATGGCTTCCGCTCTCGGCAGGGCCGTTCTGGTGGGAGCGCGGGGGGTCCC
TGTTGCAGCAGTTAACCGGAGAGTTTGTGTAGCAGGCGCTAGGGGAAGGG
GACTGAAGACGAACCCGCACGTTGAGGTGAGACTGACAAAACACAACATG
AAGTCCCTTCGACGTACAACAGTACAGGACAGCCTGTTTGTGAAAAATTG
TCCACGATACAGCACAGGCAGTGCCCACAGCAGGCGGTGCGTGAAATTTA
TCTCGAAAAAGCAGCCTGCTCCTCAATGTGTCAGTGATGCACACGGCACT
GGGTGAGCAAGTTTGGCGAACAATTTTTACGAAGAAAACGCTCGAAGAGA
CTGGTCCGTGCAAAAACATGCAACCCTCTACCTCGTTGTTGTTTCTCACA
TTAGCTCTTTTCTAGTATCTAGCGCCCGTGGTCACACCAAATGCTGGAGC
CATAGGAAGATCCGAAGAACACAGAAAATCAAACAGAAGAGCGCCTACGC
ACGTCGAAGGAAGGCACTTCTTTGGACGTATTTGTCCCTGTGTTCAGACT
ACTGAACTACGCACCACGGACAATCCTTCGGCTACAGCAGTAACCCCTGA
TCCCAATCCCTCCTCCAACCAACTCTCGGTTGCTGGCTACAGTAGAACCT
ACTGTCTGGAGTGCTGCCCGCACCGTACCACGTACGGTAGTCAAGTGGAG
AGAACAGCATCGAAGACACATGTGCTGTCTGAAGTGCTGCCAAATATCAT
CCCGTCTAGATGTATGTGCAATAAAAGAGGGACAACAACCAAGGCCATCA
CACAACGACCTACCTCTACCTCGTATGAGTGTGGGTGTACAAGCCTCTGA
TATAGATGCAGAGGAACGGGGGTTCGATTCCCGGTGAATGTGTTCCTTTG
CTACTTTGAAAGCGGCTATGCTGTTAGTAAAATCAGATTCGGCTTCGCCG
ACGAGGGTAGGGACCGCGGACCCCTGCTCGCGAGAAAAAATCTCACGCAT
GTACCGCAGAAGGAAGGTGGGGGTAACTCCTCCTGTGTTGACCTTCCTCC
TGTGTGACCCCGTCGATGGGCCTAGCCTGTAGTTTGCAGACTAGTGTGCC
AGAGAATATGGGATGACAACACACACCGCATGACATATCGTACTTTTCGT
GCAGTGCAGTCTGTTCTCGCTCGACCAAATCGACCACCGGGTATCTACAA
GTAGATACATTCACGAAGCACCAACAGAATTGCACGAATTGTCAACACAC
AACGTCGTAGTGGAGTGAAGACATCAGCAAGAAACTGTGCAATGCCGCCC
CTATCATACTCCCAGCCTACCATATGTTGTTGTTGTTGGTGTTGTCTTCG
CATTAAAAACCATTCCGATCTCTCCTCAGTACCTTCTAATGTCCGTACTC
CCCCGATCAGGTACGATTTCCGTGGTCACAGGCTGCTTGCCCCAAAAGAG
GTATATGGTACTCGGGAGATCCCCTCAGTCCACCAAATAAAGGCACGACA
AAGAGACTCCGGCAAAAACAAAAACGGACCCCGGTATCGGTAAAATGCTA
AATACTACTTAAGTAAAATACAAAGAACAGCAGTATGTTCCAAGGATCAC
CTCTTTAAATCCGACGTTTTATCGATGATAACGACACCAATACTTCGGCT
GCCAGCACCAGCACGGAGCAAGGAGAAAGGCCTGTGCGTATGTAGGGCCC
TCGTTGCCCGAGGGAAATACAGCAGTATTAGTCCACAGCCGAGGTCCGAG
TATTCTCCGACACGACAACTTCCTGCATCATAAAGACACGTGTAGCAGAG
TGTGGGCAAGGGCTTCTACGTGTGTCACGCCACGGAAGATACTGCTGTTG
TGTACCGGAACCGGCGCAGCGTCGTAGGACTGTAGCAGCTGGTGTGTCTG
CTGTTGGTGCTCCCCAAGCGGTCTGGGCCGGGGCCTCTGGGTTTTCCGGG
GTACAAGCTTATCCTTCGTTATGAAATTTGACCCCGAATCAGAGTTGATT
TCAGTAGAAAAGGCGAGGCCCACAGGGAGTACGGTAGAAGTCACTGCGGA
CGCCGGCAACGAACACGTGTTCCCCTCTCTTCATGCACCTGGTGTATTGC
ACAAAGCATCTTATCTACAGAGCTTCTCTATTTAGTTTTATGACAGGATT
TGGCTGGCATGACACCAAGTGAATTCTGCTCCAGGCGATTAAAATGGGGG
TGTTGAAAACAGCTCTATTTTCAAGTTGGTTGTTTTCTGGTAAGGTGTGA
CATCGCAAGGGGGAGCGGTATCTCGTTTACCGTTTTGCCGTGCCTATCGT
ACAAAGGACCGTTTTGTGAAGCGAGTGCTCTAAGCATGCACCAACCCGAA
GAGCAGCCCATGGAGGAATTGACTAAGGCTTGGTTCTAGAAAGCCTGTGG
CAGTGCTGCTTTCTGAAACGGCCCGTAAGGGTGGGGCCTACGTAATTTTT
GTGGACTCGAACATCGAACATCGAACAAGCGGATAGTTCGATGTTCGACT
TTTTGGGTCCTTTGTAATTTCGGAAAAGGCGAGTAAAAAAATCCCACACT
CACACACACACACACGCAAGTGCTCCCCAATAGACCGGGCTGTCATATCG
GTACGCAGCTGCTGCTGCTGCTGCTGCTGCTGCTACGGCTGCTGTGTGGT
TGCGACAGGAAGCCACGCCCGTGTGATTGCGTCTCACCTGGCCCCGCTTG
TGCACGCGGGGCCCTGAGATCAGTCGAAACCTCGCTGTCGCTCGGCATAG
ACACTTGTTCTGCGGCTATGCTCTGCGGTCGTCTCTCTCTCGGTCGCCCG
GTCGCCCTCTCTCTCGTCCTGAGAGGGAGCGATAGACGCGGGTCTTCTTT
TTTTGTCACCAATTATTTTATTTCGTCAATAGCCCACAGGACTGTAGGTT
CGGTGTTAGGTTTTCGACTTTTTGTGGAAGATGTTGGAGTTTTAGGCGGA
ATCGCCCCTGGAAGATCCGTCGTAGAAAAACTCGAACACCCTAACATCTT
TTGTTTTATTTTATTTTCACGGCCAATCACATGATTACGCCGCTTGTTCG
ATGTTCCATGTTCGAGTCCAAAAAAATTACGTAGGCCCCACCCTAACGAA
AACACAAGTACACGAACCTCCTGCGCGTTGAACTGCTGCTGTAAGTGCTG
CCATGCATCAGACAAATAGAGTTTCGCTGTGATGTCGATTTGGTGAACAG
CGAGTCCACGCCAAGGCAAAAAGAACGTCACGACTATACACGCTCGTAGG
CAGCACTCCTGCTCACCTCTCGCCCTCACTCGCCAACCGAAGTCACCGAC
TAAACTCGCGCACGACCAATGTACAATCCTCTTATGTATGGCATTTGCGC
TATTGTCACTCAAAGGGCCGAACCAGTACCTCTCCTTGACCTCGATTTTT
TCCGCTGAACGTCGATGCGTGCAACCTCGATTCCCTACCCAAATCGAACC
AAACTTGGGTTTGTGTGTTCCCACAGGAGTGGATGGGGAAGCGAGAAATC
TCGGAGAAGACGTTCACTTTCACGCCCAAGATCTCTTTCGGCCTCCTCAT
GACGATCGTCGTGTTCCCGGCGCTGCTGTACGGAAACATCAAGGCCGGTA
TGCAGGCCAAGGACGCGAAGCAGGGCCTGCAACGGGAATACTTCTAAATC
CACATTTTGTTCTGTGCTGGTGTTTTGTCACGACGAAAGACCGAAGTTTT
TTTTTCGATGTAGTAAAAACGGGAGTATTACACGTAGTTTGGTACTTCGA
AGCACGTCTGGAGCCATTGTTGTGTTCTTTGGCGTGAGGTTTTAACATGG
TTTACATTTTGTGTGTGGGATGTGATCCCAAGGATGGCACTCGTTCGTCT
TGATTCGGATATCGGACGGCTTTATGGGCGTGCATCCCGGCTGCAGCTAA
TTGCTACACGACAATGATGGGAGACGCGGCGGCGGGGGAACGGGGAATGG
GGAACCATTTTGCTGCTGCTCATGTCGCGTTCCAAGCGAGGTGCAGGAAA
AGAGTATCGTAGGATGCTGGGAGATTTGACGGTAGAGTTAGGTTGAGTTC
CGAAAAGGGCCCCTGTATCTAGTCCGAGTGGAGGCAACTTGTTGGGCTCA
CGGGAGGAACATCTTGCTGGAGAATGTGTTCGTTCGTGGATTTACAACCA
CGGAGAAACTGCTGCAAGCTTCTCTAGACCTGTGTGGAAAATCGTCTTGG
CGTGTTCTTCATTTTCCCTGGCTACGCGGGTTATGATATGGTAATGGCCA
CGGGGCTACCGCCCACGCACGTTCACGTTTCGATTATGAACAGTGATTTC
AGAGCCATCTGTGCACTGTTCTGTTGAGCGGGCTCTGCGCTGCTGAAGAC
TAATCGTGCCTTCCGCCAGTGGTTTGATCGATCCGCGTTGTCAGAATCAG
CTGCTGTGCAATCAGCAGAGAGAGGTGGATACATGCCCAGACCACCAACC
AGACCACCAAAGCCCTTTCTTCAGCACCACGGCATGCCGACTGCACGTCC
AGTCGCCCTCTGCGGCGCACAGCAAATAAGCGAGCACGTGTCCCTCTGCA
AAGCCCAGCACCCGAAATAGCCAAAATATTCTTCCGTGAAACGCCGTTTT
TTTGTTTTAATAAAACGTGATTTTGCTCCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:443546..448176-

>mRNA_P-littoralis_Contig19.96.1 ID=mRNA_P-littoralis_Contig19.96.1|Name=mRNA_P-littoralis_Contig19.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig19:443546..448176- (Pylaiella littoralis U1_48)
ATGGCTTCCGCTCTCGGCAGGGCCGTTCTGGTGGGAGCGCGGGGGGTCCC
TGTTGCAGCAGTTAACCGGAGAGTTTGTGTAGCAGGCGCTAGGGGAAGGG
GACTGAAGACGAACCCGCACGTTGAGGAGTGGATGGGGAAGCGAGAAATC
TCGGAGAAGACGTTCACTTTCACGCCCAAGATCTCTTTCGGCCTCCTCAT
GACGATCGTCGTGTTCCCGGCGCTGCTGTACGGAAACATCAAGGCCGGTA
TGCAGGCCAAGGACGCGAAGCAGGGCCTGCAACGGGAATACTTCTAA
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