mRNA_P-littoralis_Contig19.205.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.205.1
Unique NamemRNA_P-littoralis_Contig19.205.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:932662..934025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size558
Hectar predicted targeting categoryother localisation
Exons3
Cds size558
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789905.7458954-CDS-P-littoralis_Contig19:932661..9328491680789905.7458954-CDS-P-littoralis_Contig19:932661..932849Pylaiella littoralis U1_48CDSP-littoralis_Contig19 932662..932849 -
1680789905.755779-CDS-P-littoralis_Contig19:933004..9332911680789905.755779-CDS-P-littoralis_Contig19:933004..933291Pylaiella littoralis U1_48CDSP-littoralis_Contig19 933005..933291 -
1680789905.7663405-CDS-P-littoralis_Contig19:933942..9340251680789905.7663405-CDS-P-littoralis_Contig19:933942..934025Pylaiella littoralis U1_48CDSP-littoralis_Contig19 933943..934025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.205.1prot_P-littoralis_Contig19.205.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 932662..934025 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.205.1

>prot_P-littoralis_Contig19.205.1 ID=prot_P-littoralis_Contig19.205.1|Name=mRNA_P-littoralis_Contig19.205.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=186bp
RALRRKRTSESRDLKVLEDVLLVRATKRIPNPVLLSFKMLAYYARARAVD
ALRDANDMEARLGVLSSWDADCNVRGILGIIGTRAKMKFSDTFSKKEFFR
DLCNCVATLNDKEYSNGHVVCLRAMSGEPGLALADTERIPICRHGVNLER
SVQLAFPVVDEMFERRAAARKLEAAKGAIATKKKTV
back to top

mRNA from alignment at P-littoralis_Contig19:932662..934025-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.205.1 ID=mRNA_P-littoralis_Contig19.205.1|Name=mRNA_P-littoralis_Contig19.205.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1364bp|location=Sequence derived from alignment at P-littoralis_Contig19:932662..934025- (Pylaiella littoralis U1_48)
AGAGCGCTCAGGCGAAAGCGGACCTCGGAGTCCCGGGACTTGAAGGTCCT
TGAGGATGTGCTTCTGGTTCGGGCGACGAAGAGGTCGAGTGAGTATGTAT
ATGTATGTCACCGTAACCCTAGAACAGAGCGTGTGAGTGCACCGACAGGA
CATGCATGTATCACATCCTGTTGTCGTGCGCGGAAGAAACATAAAAAAAA
CTACTGCTCTTCGTTCTCGCTTCAAATGAAACAAATAGTGCAGTACATGG
ATCTCCTGTTGCTCGACCACGCCGTTTCTTACCTACCCTTTAGAGTTCAG
TGTGGGGCCAGCCGGTCCTTCGAGGAGGAAAAAACACAACAAGATGTTTA
AAATCCGGGTTTTGACGAGAGTAATAAAGTTTCGGCACCGTATAAGATGG
GTTTTAAGATGGAGCAAGGAGGCGGGTACAGGTTGGCGGGTTGGCGGTGG
TCATATACATGTCACAGGCTCGCGCTTTGATCCTGTACCTACAGCTCTAT
CATACCAGTTCTTTATCGATCACCCTACACGTCGGCCCACTGCGGTTGTG
TGTGAATATGATATATCCACCCCAACGTTTGATTGTCTCGTAAAATATCA
CCATGAGAAACGGAGCAATCGCGACTCCAAAACTTGGTATTTTGTCATTC
TTCTTTTCACAGTATATCACCATCGCCTGCTGGTCGCCTCTCTTGTCCAC
CGGCTGCTGTGTGTCCCGTTCTTCCACACGAAAGGATCCCGAACCCGGTG
TTGTTGTCGTTTAAGATGCTGGCATACTACGCCAGGGCAAGAGCGGTGGA
CGCGCTGCGAGACGCGAACGACATGGAGGCGCGGCTGGGGGTCCTCAGCT
CCTGGGACGCGGACTGCAACGTCAGGGGCATCCTCGGCATCATCGGGACG
CGGGCCAAGATGAAGTTTTCCGACACGTTCAGCAAGAAGGAGTTTTTCAG
GGACTTGTGCAACTGTGTCGCCACCCTCAACGACAAAGAGTACAGCAACG
GCCACGTTGTTTGCCTGCGAGGTATACATGCGGTGTGCGGTTTGTATGTG
TCTCCTTAAAGGTTGCCCGTGGCAAACAAGTCGCCGGTCGGTCGCGGTCG
TCGATGAGGTGCATTGTTTCACCGAGCCCTCCTTCCATCGCTGCTGTGTT
GTCGTGCATGTCTCCCGTCGAACCAGCCATGTCGGGAGAACCAGGGCTGG
CCTTGGCGGACACGGAACGGATACCCATCTGTCGCCATGGCGTCAATCTC
GAGCGTTCGGTGCAGCTGGCATTCCCCGTCGTCGATGAGATGTTCGAGCG
CCGCGCTGCCGCCAGGAAACTTGAAGCTGCCAAGGGGGCAATCGCCACCA
AGAAGAAGACCGTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig19:932662..934025-

>mRNA_P-littoralis_Contig19.205.1 ID=mRNA_P-littoralis_Contig19.205.1|Name=mRNA_P-littoralis_Contig19.205.1|organism=Pylaiella littoralis U1_48|type=CDS|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig19:932662..934025- (Pylaiella littoralis U1_48)
AGAGCGCTCAGGCGAAAGCGGACCTCGGAGTCCCGGGACTTGAAGGTCCT
TGAGGATGTGCTTCTGGTTCGGGCGACGAAGAGGATCCCGAACCCGGTGT
TGTTGTCGTTTAAGATGCTGGCATACTACGCCAGGGCAAGAGCGGTGGAC
GCGCTGCGAGACGCGAACGACATGGAGGCGCGGCTGGGGGTCCTCAGCTC
CTGGGACGCGGACTGCAACGTCAGGGGCATCCTCGGCATCATCGGGACGC
GGGCCAAGATGAAGTTTTCCGACACGTTCAGCAAGAAGGAGTTTTTCAGG
GACTTGTGCAACTGTGTCGCCACCCTCAACGACAAAGAGTACAGCAACGG
CCACGTTGTTTGCCTGCGAGCCATGTCGGGAGAACCAGGGCTGGCCTTGG
CGGACACGGAACGGATACCCATCTGTCGCCATGGCGTCAATCTCGAGCGT
TCGGTGCAGCTGGCATTCCCCGTCGTCGATGAGATGTTCGAGCGCCGCGC
TGCCGCCAGGAAACTTGAAGCTGCCAAGGGGGCAATCGCCACCAAGAAGA
AGACCGTC
back to top