mRNA_P-littoralis_Contig189.87.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig189.87.1
Unique NamemRNA_P-littoralis_Contig189.87.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig189.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig189contigP-littoralis_Contig189:398492..400872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2381
Hectar predicted targeting categoryother localisation
Exons1
Cds size1725
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789900.2535443-UTR-P-littoralis_Contig189:398491..3988771680789900.2535443-UTR-P-littoralis_Contig189:398491..398877Pylaiella littoralis U1_48UTRP-littoralis_Contig189 398492..398877 +
1680789900.275462-UTR-P-littoralis_Contig189:400602..4008721680789900.275462-UTR-P-littoralis_Contig189:400602..400872Pylaiella littoralis U1_48UTRP-littoralis_Contig189 400603..400872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789900.266847-CDS-P-littoralis_Contig189:398877..4006021680789900.266847-CDS-P-littoralis_Contig189:398877..400602Pylaiella littoralis U1_48CDSP-littoralis_Contig189 398878..400602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig189.87.1prot_P-littoralis_Contig189.87.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig189 398878..400602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig189.87.1

>prot_P-littoralis_Contig189.87.1 ID=prot_P-littoralis_Contig189.87.1|Name=mRNA_P-littoralis_Contig189.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=575bp
MSEGAAYTFNSHRDALYKVLEAAARGQAGCADEYDIFGRDKQEGEKKLAF
PTPLLWHEEIRPSDIDAYHAANQARCTSGCDNSNNSDDLRPLSPPTSRHP
SSGYFNRSREALKEAGTSEGGAAALEGGLPPAPSAAAVVADRTSEPKAAA
AAADHAQGEKQERLLGSGGASARTPDQSLGATTSNHPSCTKHRCRYQPGD
TTGIHQEEEREEEGATAPPAASMDWSNSDGRSPSEAGEKKINCPSTMTPA
ATTPPDPSQATQTMFLPGLPSQVLVTQQQEQQEQQQGDAVGWEHSEGDES
SQKEDDTPVSEYALSLPNHNRPCSSPEENTSKGASTVSAGDKQLGSDFRT
ERSEPDRNSSGDRDDPTVVSGDGNKGAVAAAAARERGEARSRQYDAFTRA
LRDFVGQQQLGREGDTKQAGSAQQCTLRNVSSLGGTSSSDGGGGGDQSKP
PFIFLPTPEVLPSGWSGGQAGVVVFLEKHLSHVRERCPGGYAARALELAC
HTLRQPTVCVKAVDCARADASAARRADFFAGAATVDDDHPQVVGVAGFVW
EMLRANNGGSANLAQQAASTSQEG*
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mRNA from alignment at P-littoralis_Contig189:398492..400872+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig189.87.1 ID=mRNA_P-littoralis_Contig189.87.1|Name=mRNA_P-littoralis_Contig189.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2381bp|location=Sequence derived from alignment at P-littoralis_Contig189:398492..400872+ (Pylaiella littoralis U1_48)
CCCGGTTTCTGTTGTTGTGTCGTCTTCTTCCCTCTTCTCACCTACCAATG
TTTGTGCAACTCGCTATTCCTGACTCTGTATCACGCTTGCCGAATACGCT
GCAAATTGACACGAGCCAAGTACTGTTGGGCCAAGGAAGAAGTTCAACGG
CTCTGGGGGGTTCATTCTCAGGTGAAAAGCTGTCGTAGCTGTTGGCCTCC
TGTTGACCTGGACCGCGGGAAGAAGAGCAATACACCACCGGGAGGGAGCT
TTTGAGCAGGAGAGAACCGCAGGCCGTGTGTCGCGGCAACACCTCTCCTG
GTCAAGTTGGTTTCGCTCCTTGTGCACTTCTTTGTCGCTAGTGAAGGTGG
TGGTGGCTCCAGGGCGATGCCATTGACACGCAATCGATGTCCGAGGGAGC
AGCTTACACCTTCAACAGCCACCGCGATGCGCTGTACAAGGTTCTCGAGG
CCGCCGCGAGAGGGCAGGCAGGCTGTGCCGATGAGTATGACATCTTTGGA
AGAGACAAACAAGAGGGCGAGAAAAAACTGGCCTTCCCAACTCCACTTCT
GTGGCATGAAGAAATACGGCCATCAGACATCGACGCCTACCACGCCGCCA
ACCAGGCTCGTTGTACCAGCGGCTGCGACAACAGCAACAACAGCGATGAT
CTCCGTCCCTTATCACCGCCGACATCTAGACACCCTAGCAGCGGGTATTT
CAATCGATCGCGTGAAGCATTGAAAGAAGCCGGAACTAGTGAAGGGGGGG
CGGCGGCCCTTGAAGGGGGTCTACCTCCAGCACCATCGGCCGCCGCTGTG
GTCGCAGACCGTACCTCCGAACCCAAAGCGGCGGCGGCGGCAGCGGATCA
CGCGCAGGGAGAGAAACAAGAGAGACTGTTGGGGTCGGGGGGGGCTTCGG
CCAGGACACCAGACCAAAGTTTGGGTGCAACTACCTCAAATCACCCATCG
TGCACCAAACATCGATGCCGCTACCAGCCCGGCGACACGACTGGCATCCA
CCAAGAGGAGGAAAGAGAGGAGGAGGGCGCTACTGCACCACCAGCAGCAA
GCATGGACTGGTCGAATTCGGACGGCAGGTCTCCTTCGGAAGCCGGCGAG
AAGAAGATAAACTGCCCCTCGACCATGACGCCAGCAGCGACAACGCCACC
TGACCCTTCACAGGCCACGCAGACCATGTTCCTGCCGGGCCTGCCCTCGC
AGGTGTTGGTGACACAGCAGCAGGAACAGCAGGAGCAGCAGCAGGGCGAC
GCTGTAGGATGGGAACACTCCGAAGGGGACGAGTCATCCCAGAAGGAAGA
CGACACACCAGTGTCAGAGTACGCACTCTCCCTCCCCAACCACAACCGCC
CTTGTTCATCTCCCGAAGAGAATACTTCAAAGGGGGCTAGCACTGTTTCC
GCTGGAGACAAACAGCTCGGCAGCGACTTTCGAACCGAAAGATCTGAGCC
GGACAGGAACAGTAGTGGCGACAGGGACGACCCTACAGTTGTGTCGGGTG
ACGGTAACAAGGGAGCGGTGGCTGCCGCCGCTGCCCGTGAACGAGGTGAG
GCTCGCTCTCGCCAATATGATGCCTTCACCCGTGCTTTGAGAGACTTCGT
GGGACAGCAGCAGCTGGGCAGGGAGGGCGACACCAAACAAGCAGGGTCTG
CACAGCAGTGCACCTTACGGAACGTCAGCAGTCTCGGTGGTACCAGCAGC
AGCGACGGCGGCGGCGGCGGCGACCAGTCAAAACCACCGTTCATTTTCCT
GCCAACTCCCGAGGTGCTACCGAGTGGGTGGTCGGGAGGGCAGGCGGGAG
TCGTTGTTTTTCTTGAAAAGCACCTGTCGCATGTCCGCGAGCGGTGCCCC
GGCGGCTATGCCGCCCGTGCCCTTGAGCTCGCGTGTCACACGCTGCGCCA
GCCTACGGTGTGCGTCAAGGCCGTGGATTGTGCGCGTGCTGATGCATCAG
CCGCTCGGCGAGCCGACTTCTTCGCCGGAGCTGCTACGGTGGACGATGAT
CACCCTCAGGTTGTGGGTGTTGCGGGGTTTGTGTGGGAAATGTTGCGCGC
GAATAACGGTGGTAGTGCGAATCTGGCGCAACAAGCAGCCAGCACATCTC
AAGAGGGGTAGGCCATCAGGGGGCGAGTACAACGAAAAATGAGCTTTTTT
GTCACACGGCGATTGTGCATGTATGTATGTATGCACCCATGCTTTCGTTT
GTACAGGGAATTTTGCTCACGAAGACGGAGGCTTACTTAAATCAATCAAG
GGAGCGTGGGAAACCTAACAACAATTGCGAAAAAATAGCTCCAAAATTGA
TGAGGGCCCAATTTGGATACTTCGATTAGTCTTGTGCCGGTTTAAGGGAT
AAAAGTGGGGAAAACAGCGGGTAGTTTTTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig189:398492..400872+

>mRNA_P-littoralis_Contig189.87.1 ID=mRNA_P-littoralis_Contig189.87.1|Name=mRNA_P-littoralis_Contig189.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1725bp|location=Sequence derived from alignment at P-littoralis_Contig189:398492..400872+ (Pylaiella littoralis U1_48)
ATGTCCGAGGGAGCAGCTTACACCTTCAACAGCCACCGCGATGCGCTGTA
CAAGGTTCTCGAGGCCGCCGCGAGAGGGCAGGCAGGCTGTGCCGATGAGT
ATGACATCTTTGGAAGAGACAAACAAGAGGGCGAGAAAAAACTGGCCTTC
CCAACTCCACTTCTGTGGCATGAAGAAATACGGCCATCAGACATCGACGC
CTACCACGCCGCCAACCAGGCTCGTTGTACCAGCGGCTGCGACAACAGCA
ACAACAGCGATGATCTCCGTCCCTTATCACCGCCGACATCTAGACACCCT
AGCAGCGGGTATTTCAATCGATCGCGTGAAGCATTGAAAGAAGCCGGAAC
TAGTGAAGGGGGGGCGGCGGCCCTTGAAGGGGGTCTACCTCCAGCACCAT
CGGCCGCCGCTGTGGTCGCAGACCGTACCTCCGAACCCAAAGCGGCGGCG
GCGGCAGCGGATCACGCGCAGGGAGAGAAACAAGAGAGACTGTTGGGGTC
GGGGGGGGCTTCGGCCAGGACACCAGACCAAAGTTTGGGTGCAACTACCT
CAAATCACCCATCGTGCACCAAACATCGATGCCGCTACCAGCCCGGCGAC
ACGACTGGCATCCACCAAGAGGAGGAAAGAGAGGAGGAGGGCGCTACTGC
ACCACCAGCAGCAAGCATGGACTGGTCGAATTCGGACGGCAGGTCTCCTT
CGGAAGCCGGCGAGAAGAAGATAAACTGCCCCTCGACCATGACGCCAGCA
GCGACAACGCCACCTGACCCTTCACAGGCCACGCAGACCATGTTCCTGCC
GGGCCTGCCCTCGCAGGTGTTGGTGACACAGCAGCAGGAACAGCAGGAGC
AGCAGCAGGGCGACGCTGTAGGATGGGAACACTCCGAAGGGGACGAGTCA
TCCCAGAAGGAAGACGACACACCAGTGTCAGAGTACGCACTCTCCCTCCC
CAACCACAACCGCCCTTGTTCATCTCCCGAAGAGAATACTTCAAAGGGGG
CTAGCACTGTTTCCGCTGGAGACAAACAGCTCGGCAGCGACTTTCGAACC
GAAAGATCTGAGCCGGACAGGAACAGTAGTGGCGACAGGGACGACCCTAC
AGTTGTGTCGGGTGACGGTAACAAGGGAGCGGTGGCTGCCGCCGCTGCCC
GTGAACGAGGTGAGGCTCGCTCTCGCCAATATGATGCCTTCACCCGTGCT
TTGAGAGACTTCGTGGGACAGCAGCAGCTGGGCAGGGAGGGCGACACCAA
ACAAGCAGGGTCTGCACAGCAGTGCACCTTACGGAACGTCAGCAGTCTCG
GTGGTACCAGCAGCAGCGACGGCGGCGGCGGCGGCGACCAGTCAAAACCA
CCGTTCATTTTCCTGCCAACTCCCGAGGTGCTACCGAGTGGGTGGTCGGG
AGGGCAGGCGGGAGTCGTTGTTTTTCTTGAAAAGCACCTGTCGCATGTCC
GCGAGCGGTGCCCCGGCGGCTATGCCGCCCGTGCCCTTGAGCTCGCGTGT
CACACGCTGCGCCAGCCTACGGTGTGCGTCAAGGCCGTGGATTGTGCGCG
TGCTGATGCATCAGCCGCTCGGCGAGCCGACTTCTTCGCCGGAGCTGCTA
CGGTGGACGATGATCACCCTCAGGTTGTGGGTGTTGCGGGGTTTGTGTGG
GAAATGTTGCGCGCGAATAACGGTGGTAGTGCGAATCTGGCGCAACAAGC
AGCCAGCACATCTCAAGAGGGGTAG
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