mRNA_P-littoralis_Contig189.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig189.27.1
Unique NamemRNA_P-littoralis_Contig189.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig189.27.1 vs. uniprot
Match: D7G5E6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5E6_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 2.430e-102
Identity = 174/244 (71.31%), Postives = 193/244 (79.10%), Query Frame = 3
Query:   78 MSLLTTISVREGEEALEKVPARVEQMQLLLDGKFAYTSLTDVESAFKQLLAGSGGTATENADMTALLSSVRDEVAQTLNILLALKRWIQVQVPKIEDGNNFGVSVQLDVTKGIDGLTAPLATSLGELPGYFESRASAWDKIATKTSKESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNHLVALDIKWFVSLHHTLLRARDSLVCAADMIEKNMEKLLRPKGTNTQGGGMYSF 809
            MS LT ISVREGE AL  +P +V +MQ LL+ +FAYTSL D+ES FKQLL  SGG+ATENA+M ALLS+VR+EV QT++ILLALKRWI+VQVPKIEDGNNFGVSVQLDV KGID LT P+A+SLGE+PGYFESRASAWDKI  K SKES                 XXXXXXXX            DS+NHL+ALD+KWFVSLHHTLLRARDSLV AADMIEKNMEKLLRPKGTNTQGGGMYSF
Sbjct:    1 MSSLTAISVREGEVALANLPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMGALLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMPGYFESRASAWDKIGNKKSKESKTSSSASKDTGGKDGDSXXXXXXXXTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMYSF 244          
BLAST of mRNA_P-littoralis_Contig189.27.1 vs. uniprot
Match: A0A835YYY9_9STRA (Proteasome activator pa28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYY9_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.100e-36
Identity = 86/233 (36.91%), Postives = 117/233 (50.21%), Query Frame = 3
Query:   78 MSLLTTISVREGEEALEKVPARVEQMQLLLDGKFAYTSLTDVESAFKQLLAGSGGTATENADMTALLSSVRDEVAQTLNILLALKRWIQVQVPKIEDGNNFGVSVQLDVTKGIDGLTAPLATSLGELPGYFESRASAWDKIATKTSKESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNHLVALDIKWFVSLHHTLLRARDSLVCAADMIEKNMEKLLRPKG 776
            M  L   S  EGE A E VP  V  +   L   FAYT L+ +ES+F   +A +G     N  +  LL +V+ ++A ++NILLAL RWIQV VP IEDGNNFGV VQ +V K I      L  +  +LP Y E RA AW+K+A K    +                                     D    LV +D++ +V LH ++  ARD+++  ADM+EKN+ K+  PKG
Sbjct:    1 MEALKEQSKSEGEAAREVVPTFVAHLNESLASNFAYTDLSQIESSFTAAVAAAGSVPATNDKLAKLLPAVQSDLATSINILLALYRWIQVHVPIIEDGNNFGVGVQQEVAKLIAESVTKLEAAFDKLPEYHEKRAGAWEKLAAKEDSTAKKSTSKSTVTGGKEGDENKTTVTESNDTSSSTSRQIPDGLRALVTMDVRCYVQLHKSIQLARDTVLFCADMVEKNVTKIKAPKG 233          
BLAST of mRNA_P-littoralis_Contig189.27.1 vs. uniprot
Match: H6WB99_VAULI (BED-type domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB99_VAULI)

HSP 1 Score: 117 bits (293), Expect = 7.860e-26
Identity = 74/225 (32.89%), Postives = 110/225 (48.89%), Query Frame = 3
Query:  108 EGEEALEKVPARVEQMQLLLDGKFAYTSLTDVESAFKQ--LLAGSGGTATENADMTALLSSVRDEVAQTLNILLALKRWIQVQVPKIEDGNNFGVSVQLDVTKGIDGLTAPLATSLGELPGYFESRASAWDKIATKTSKESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNHLVALDIKWFVSLHHTLLRARDSLVCAADMIEKNMEKLLRPKG 776
            EG+   E VP+ ++++  +L   F+YT L  +E  F    L   S      N  + +L+S VR ++   +N L +LK WI+  VP IEDGNNFGV VQ +VTK I      L  +   LP Y E R++ W+K+  K+   +                                     DS   +VALD+K +V+LH  L  +RDSL  +A+++E N+ KL+ PKG
Sbjct:   89 EGKVIREIVPSLIKELDKILQYDFSYTDLLSIEKTFADDVLANASQNQPQVNEKLCSLISLVRSKMVLAINTLFSLKMWIRAHVPAIEDGNNFGVGVQYEVTKNISESIEKLQAAFNTLPEYHEKRSAVWEKLIGKSETVTKKSTGNEDKSTVTQSTDESNSTGKQLP----------DSLRTIVALDLKCYVNLHSHLQLSRDSLFFSANLVELNIGKLVAPKG 303          
BLAST of mRNA_P-littoralis_Contig189.27.1 vs. uniprot
Match: A0A8K1CBJ1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBJ1_PYTOL)

HSP 1 Score: 111 bits (278), Expect = 2.040e-24
Identity = 74/243 (30.45%), Postives = 108/243 (44.44%), Query Frame = 3
Query:   78 MSLLTTISVREGEEALEK-VPARVEQMQLLLDGKFAYTSLTDVESAFKQLLAGSGGTATENADMTALLSSVRDEVAQTLNILLALKRWIQVQVPKIEDGNNFGVSVQLDVTKGIDGLTAPLATSLGELPGYFESRASAWDKIATKTSKESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNHLVALDIKWFVSLHHTLLRARDSLVCAADMIEKNMEKLLRPKGTNTQGGGMY 803
            M     +  RE E  L+  +  R+E++Q LL  +F   ++ DV +     +     T  ++  + AL+ +V   +   L+    L +WI + VPK+ DGNNFGV VQL V K I   T  L  +   LP Y   RA+A +K+  K SKE                                      D    +VA+D+KWF +L  TL   RD+     D +EKN +K+LRP+     G GMY
Sbjct:    1 MEAYKELVTREAEALLQSGITQRLEEVQKLLVAEFQSRAIADVRATSTTSMQQQLPTIQQHPQLPALVGAVATHLEHALSDFQKLSQWISLLVPKVADGNNFGVEVQLIVLKEIKDATDKLQKAWDSLPDYHSQRATAIEKLNDKRSKEKTVTTTVTESTGGKEGDEKKSVVSSVDKESSTSAAPVDDWIAQVVAIDVKWFYNLARTLEIVRDAYAIVYDRVEKNKDKILRPRNQERAGYGMY 243          
BLAST of mRNA_P-littoralis_Contig189.27.1 vs. uniprot
Match: K3WA13_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WA13_GLOUD)

HSP 1 Score: 110 bits (274), Expect = 7.300e-24
Identity = 68/235 (28.94%), Postives = 109/235 (46.38%), Query Frame = 3
Query:   78 MSLLTTISVREGEEALEKVPARVEQMQLLLDGKFAYTSLTDVESAFKQLLAGSGGTATENADMTALLSSVRDEVAQTLNILLALKRWIQVQVPKIEDGNNFGVSVQLDVTKGIDGLTAPLATSLGELPGYFESRASAWDKIATKTSKESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNHLVALDIKWFVSLHHTLLRARDSLVCAADMIEKNMEKLLRPKGTN 782
            M    T   ++  + +E++P R+  +  L+   F   + + V +  KQ +  + G    +A + AL++ V DE+ Q L +L  L +WIQ+ VPKI DGNNFGV VQ      +    A        L  Y+  RA+A +K+  K +KES                                     D  +++VA+D+KW+ +L  TL   RD     AD+IEKN +K++ P+G +
Sbjct:    1 MDAYRTSVAQDAHKRIEELPQRLAHVHALVQQHFQARTPSAVRATLKQSVTATRGKVDASATLDALIAVVGDEIEQVLTVLAQLSQWIQLLVPKIADGNNFGVEVQKLAYVHVKESIATWQKQWDALADYYNQRATAVEKVNDKIAKESSKSTTVTATTGGKDGDENKSVTTSLDKETATSGTVVDDWVSYIVAVDLKWYFNLARTLEAIRDQYAVTADIIEKNKDKIVLPRGNS 235          
BLAST of mRNA_P-littoralis_Contig189.27.1 vs. uniprot
Match: A0A6A3F8F5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3F8F5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.890e-23
Identity = 83/228 (36.40%), Postives = 117/228 (51.32%), Query Frame = 3
Query:  111 GEEALEKVPARVEQMQLLLDGKFAYTSLTDVESAFKQLLAGSGGTATENADMTALLSSVRDEVAQTLNILLALKRWIQVQVPKIEDGNNFGVSVQLDVTKGIDGLTAPLATSLGELPGYFESRASAWDKIATKTSKESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNHLVALDIKWFVSLHHTLLRARDSLVCAADMIEKNMEKLLRPKGTNTQGG 794
            G   L ++P RV  +Q L+    A  S + V + F Q +  +      N ++ +LL+ V DEVAQ L+++  L+ WIQ+QVPK+EDGNNFGV VQ      +         +   L  Y  +RASA +K+  K S E+XXXXXXXXXXXXX                        D+   +V LD+KW+ +L   L   RD     +D+I KN EK+  P+G N + G
Sbjct:   12 GAALLSELPQRVAHVQALVQQHAAERSASAVRAKFAQAVLAAPSAVGSNGNVQSLLAVVGDEVAQLLSVIAQLQLWIQLQVPKVEDGNNFGVEVQKYAFVQLKEALDKWQKTWDSLADYSSARASAVEKLNAKASSETXXXXXXXXXXXXXDGDEEKSVTAKVDKQSNNGSNAAEDAVAAVVELDVKWYFNLVRALEGVRDQYAVTSDLISKNKEKIELPRGKNDRAG 239          
BLAST of mRNA_P-littoralis_Contig189.27.1 vs. uniprot
Match: A0A662Y6D6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y6D6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.270e-22
Identity = 80/228 (35.09%), Postives = 112/228 (49.12%), Query Frame = 3
Query:  111 GEEALEKVPARVEQMQLLLDGKFAYTSLTDVESAFKQLLAGSGGTATENADMTALLSSVRDEVAQTLNILLALKRWIQVQVPKIEDGNNFGVSVQLDVTKGIDGLTAPLATSLGELPGYFESRASAWDKIATKTSKESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNHLVALDIKWFVSLHHTLLRARDSLVCAADMIEKNMEKLLRPKGTNTQGG 794
            G+  L ++P RV Q+Q LL    A  S + V +AF Q +  +      N  +  LL++  D+VA  ++ L  L+ WIQ+QVPK+EDGNNFGV VQ      +         +   L  Y  SRA+A +K+  K S ESXXXXXXXXX                            D+   +V LD+KW+ +L   L   RD     AD+I KN +K+  P+G N + G
Sbjct:   12 GDALLLELPQRVAQVQTLLQQHAAERSPSRVRAAFAQQVLATPTAVGANGQVQGLLATTSDQVALVMDALQLLQLWIQLQVPKVEDGNNFGVEVQKYAFTQLKEALEKWQKAWDALADYSSSRATAAEKLNAKLSSESXXXXXXXXXTGGKDGDEQKSVTAKVDKQGSTGAQAGEDALAAVVELDVKWYFNLVRALEGVRDQYAVTADVIAKNKDKISLPRGNNDRAG 239          
BLAST of mRNA_P-littoralis_Contig189.27.1 vs. uniprot
Match: A0A5D6XIL9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XIL9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.390e-22
Identity = 68/225 (30.22%), Postives = 99/225 (44.00%), Query Frame = 3
Query:  108 EGEEALEKVPARVEQMQLLLDGKFAYTSLTDVESAFKQLLAGSGGTATENADMTALLSSVRDEVAQTLNILLALKRWIQVQVPKIEDGNNFGVSVQLDVTKGIDGLTAPLATSLGELPGYFESRASAWDKIATKTSKESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNHLVALDIKWFVSLHHTLLRARDSLVCAADMIEKNMEKLLRPKGTN 782
            + E  L + P RVE +Q L+   FA    + V +      A S G    NA + AL + V DE+   L  L  L RW+Q+ VPK+ DGNNFGV VQ    + +    A        L  Y   RA+A +K+  K +KE                                      D +  +VA+D+KW+ +L  TL   RD      D++EKN +K+L P+G++
Sbjct:   11 DAERTLAEFPRRVEHVQALVTQHFAQRQPSAVRATLAAAAAASSGQVRGNASLAALAAVVADEIELVLAALAQLSRWLQLLVPKVADGNNFGVEVQKLALEHLKESAAGWQKHWDALAEYHSQRAAAAEKLNDKVAKEKATSATTTATTGGKDADETKTVTMTSEKETATTAAPVEDWAAFVVAVDVKWYFNLARTLEAVRDQYAVTFDIVEKNRDKILLPRGSS 235          
BLAST of mRNA_P-littoralis_Contig189.27.1 vs. uniprot
Match: D0MSD0_PHYIT (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0MSD0_PHYIT)

HSP 1 Score: 105 bits (261), Expect = 4.490e-22
Identity = 74/228 (32.46%), Postives = 110/228 (48.25%), Query Frame = 3
Query:  111 GEEALEKVPARVEQMQLLLDGKFAYTSLTDVESAFKQLLAGSGGTATENADMTALLSSVRDEVAQTLNILLALKRWIQVQVPKIEDGNNFGVSVQLDVTKGIDGLTAPLATSLGELPGYFESRASAWDKIATKTSKESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNHLVALDIKWFVSLHHTLLRARDSLVCAADMIEKNMEKLLRPKGTNTQGG 794
            G   L ++P RV Q+Q LL+      + + + + F Q +  +    + N ++ ALL+ V DEVAQ ++ +  L+ WIQVQVPK+EDGNNFGV VQ      +         +   +  Y  +RA+A +K+  K S E+ XXXXXX                              D+   +V +DIKW+ +L   L   RD      D+I KN EK+  P+G N + G
Sbjct:   12 GAALLSELPQRVAQVQALLEQHAGERTPSKLRTKFAQAVLAAPAAVSSNGEVQALLTVVGDEVAQLISTIQQLQVWIQVQVPKVEDGNNFGVEVQKYAFVHLKEALERWQKTWDSMADYSSARATAVEKLNAKASSETSXXXXXXSSKGGKDGDEEKSVTAKVEKQSNAGTKAPEDAIAAVVEIDIKWYFNLARALEGVRDQYAVTEDVIFKNKEKIELPRGKNDRAG 239          
BLAST of mRNA_P-littoralis_Contig189.27.1 vs. uniprot
Match: A0A8J5MHS4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MHS4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.370e-20
Identity = 80/255 (31.37%), Postives = 121/255 (47.45%), Query Frame = 3
Query:   30 ASQPPLFLQSEAKRTAMSLLTTISVREGEEALEKVPARVEQMQLLLDGKFAYTSLTDVESAFKQLLAGSGGTATENADMTALLSSVRDEVAQTLNILLALKRWIQVQVPKIEDGNNFGVSVQLDVTKGIDGLTAPLATSLGELPGYFESRASAWDKIATKTSKESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNHLVALDIKWFVSLHHTLLRARDSLVCAADMIEKNMEKLLRPKGTNTQGG 794
            A++P LF+ SE K+T  +         G   L ++P RV Q+  L++      + + + + F Q +  +    + N D+ ALL  V DEVAQ ++ +  L+ WIQ+QVPK+EDGNNFGV VQ      +         +   L  Y  +RA+A +K+  K S E+ XXXXXX                              D+   +V +D+KW+ +L   L   RD      D+I KN EK+  P+G N + G
Sbjct:  593 ATRPTLFM-SEYKKTVTA--------SGAALLSELPQRVAQVHALVEQHAGERAPSKLRAKFAQSVLAAPAAVSSNGDVQALLMVVGDEVAQLMSAIQQLQLWIQLQVPKVEDGNNFGVEVQKYAYVHLKEALEKWQKTWDSLVDYSSARATAVEKLNAKASSETSXXXXXXSSKGGKDGDEEKSVTAKVEKQSNAGNKAPEDAIAAVVEIDVKWYFNLVRALEGVRDQYAVTEDVITKNKEKIELPRGKNDRAG 838          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig189.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5E6_ECTSI2.430e-10271.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YYY9_9STRA1.100e-3636.91Proteasome activator pa28 n=1 Tax=Tribonema minus ... [more]
H6WB99_VAULI7.860e-2632.89BED-type domain-containing protein n=1 Tax=Vaucher... [more]
A0A8K1CBJ1_PYTOL2.040e-2430.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WA13_GLOUD7.300e-2428.94Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6A3F8F5_9STRA1.890e-2336.40Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A662Y6D6_9STRA1.270e-2235.09Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A5D6XIL9_9STRA2.390e-2230.22Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
D0MSD0_PHYIT4.490e-2232.46Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A8J5MHS4_9STRA1.370e-2031.37Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig189contigP-littoralis_Contig189:155594..160992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5E6
Preferred namePSME3
PFAMsPA28_alpha,PA28_beta
Model size1457
Max annot lvl2759|Eukaryota
KEGG rclassRC00062,RC00189,RC00676,RC01052
KEGG koko:K00276,ko:K06698
KEGG ReactionR02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740
KEGG Pathwayko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,ko03050,ko04612,ko05160,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110,map03050,map04612,map05160
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0002039,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010564,GO:0010604,GO:0010646,GO:0010648,GO:0010941,GO:0010950,GO:0010952,GO:0016504,GO:0016579,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0030162,GO:0030234,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0036211,GO:0042176,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051726,GO:0052547,GO:0052548,GO:0060255,GO:0060548,GO:0061133,GO:0061134,GO:0061135,GO:0061136,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0097371,GO:0098772,GO:1901564,GO:1901987,GO:1901990,GO:1902494,GO:1902806,GO:1903050,GO:1903362,GO:1905368,GO:1905369,GO:2000045,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Exons4
Evalue2.23e-107
EggNOG OGsKOG4470@1|root,KOG4470@2759|Eukaryota
Ec32 ortholog descriptionProteasome activator pa28, C-terminal domain
Ec32 orthologEc-06_010760.1
EC1.4.3.21
Descriptionendopeptidase activator activity
Cds size735
COG categoryS
BRITEko00000,ko00001,ko01000,ko03051,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig189.27.1prot_P-littoralis_Contig189.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig189 156239..160915 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789901.7863882-UTR-P-littoralis_Contig189:155593..1562381680789901.7863882-UTR-P-littoralis_Contig189:155593..156238Pylaiella littoralis U1_48UTRP-littoralis_Contig189 155594..156238 -
1680789901.8541625-UTR-P-littoralis_Contig189:160915..1609921680789901.8541625-UTR-P-littoralis_Contig189:160915..160992Pylaiella littoralis U1_48UTRP-littoralis_Contig189 160916..160992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789901.8028014-CDS-P-littoralis_Contig189:156238..1564871680789901.8028014-CDS-P-littoralis_Contig189:156238..156487Pylaiella littoralis U1_48CDSP-littoralis_Contig189 156239..156487 -
1680789901.813817-CDS-P-littoralis_Contig189:156946..1572201680789901.813817-CDS-P-littoralis_Contig189:156946..157220Pylaiella littoralis U1_48CDSP-littoralis_Contig189 156947..157220 -
1680789901.8282578-CDS-P-littoralis_Contig189:157815..1578961680789901.8282578-CDS-P-littoralis_Contig189:157815..157896Pylaiella littoralis U1_48CDSP-littoralis_Contig189 157816..157896 -
1680789901.8426504-CDS-P-littoralis_Contig189:160784..1609151680789901.8426504-CDS-P-littoralis_Contig189:160784..160915Pylaiella littoralis U1_48CDSP-littoralis_Contig189 160785..160915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig189.27.1

>prot_P-littoralis_Contig189.27.1 ID=prot_P-littoralis_Contig189.27.1|Name=mRNA_P-littoralis_Contig189.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=245bp
MSLLTTISVREGEEALEKVPARVEQMQLLLDGKFAYTSLTDVESAFKQLL
AGSGGTATENADMTALLSSVRDEVAQTLNILLALKRWIQVQVPKIEDGNN
FGVSVQLDVTKGIDGLTAPLATSLGELPGYFESRASAWDKIATKTSKESK
TSTSESKETGGKDGDSSKTSASSSTEEKSSESSASPDSSNHLVALDIKWF
VSLHHTLLRARDSLVCAADMIEKNMEKLLRPKGTNTQGGGMYSF*
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mRNA from alignment at P-littoralis_Contig189:155594..160992-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig189.27.1 ID=mRNA_P-littoralis_Contig189.27.1|Name=mRNA_P-littoralis_Contig189.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5399bp|location=Sequence derived from alignment at P-littoralis_Contig189:155594..160992- (Pylaiella littoralis U1_48)
ACAGCAGACTGGATAGCAGACGCCACACCGCATCACAACCGCCGCTCTTC CTGCAATCCGAAGCCAAACGGACAGCGATGAGCTTGCTAACGACGATCAG CGTGAGGGAAGGCGAAGAAGCTCTTGAGAAAGTGCCCGCGCGAGTGGAGC AGATGCAGTTGCTGTTGGATGGAAAATTTGCCTACACGAGCCTGACGGAT GTCGAGAGGTGAGGAGGGTGTGAACGGAGAGCACCGGGGGGGGGGAGGCG CAGCTGCCATCTTTTCCGTCTAGCATATTCAATCCTTTGGAAGCAAGCAG AAATTGAAAACGGGATCGCTCTAGGCACGTGCCTGTGACTGGTGTTTTTG TCCTTCCAGGAATATCAAAGGTTGTGATGCTTTTGTCCATGCGATGACAC ACAGCAGCAGCAAGCATGATATACTCCGTATGTTATAACTTCACTGCTGC AAGGATATCGCCAGTGTGTCATAGGGTAGAATACAACGCTGTACATATGA TATGTATTATAGTAGCACTACCACCAAGAATCAAATGGAGCATGATACTT TGTACAGCAGTACGAGTACTGCGAAGTGAAGTACGAAGAATATCGTATGG CATCCCACTTTTTTATGATACATGTATAGCTCGTTTTTGGTGCTTCCTAC CGTATCATACTTCGTAACAAAAAGTGTTCGGAAGAAGATATGGGAAACGA ACTTTTTTTTTTTAAATCAAAATCCACAGGGCATGAGGAATCTCTTCGCC GCCGTCAGCAGGTCGAAAAAGATACCCTCCCCCGGTTGGACCGCTTTTGA GAGCTCGAATGCGGTACACTCCGCGACGGAGAGGGTTCTCAACGGTTACA TCGAGAGATGTCTGTCAAGTTTTCTGAAAGCTCTGGACGAGATGTTTTTA TGATTTCAACGCCGATCAATCATACCGGGTATACAGCAGTGGGGATCCCG TTATAGCGACCTCTTCAGTAGCGATATGCCCTGAAAAACGACTCCAAAAA TCGCTTGGCACCAATGCACCCCGATATGACGACCTTCCGTCGCTATATCA GCGTCGCTGTATCGGACTCTGTATGCTACGCTCGCGGAGGCCCCGCCTGT TGTGGACGCCCATAAGAGGCGCCAACAAGAGGCGACAATACACCGAGTTG CCGCCACCCGCCACGCGTGATGCACCAATGCAGGGGAGACACGACTCACA AGATGTAGTATGTGTGAAGAGCTACTTCTATTCATTACGTATGGTGGATT TTTCCGATATAGCGTCATAAGGTCGCTTTTGAAGAATAGCGACCTCGTCG CTATTGAGGAATAGCGACCTTATCGCTATTGAGGATTAGCGGCTCCTTCC CGAATAGCGACCTTTTCCTCGCCTGTCACTAGGGGTCGCTATATCGGGAC CCCCACTGTACCGGTATATGACAAATCATTTTTCGGGGCTCACCGAAACT CCGACCGGTATTTTTTTATCGAGCCTTTGTGGTTTGCTTTCGAAAATATC GATCAGTGTGCTCGTTCCTCCCGAGGCGAGGATCTAGAGGAAACAAGAAC GAGGGAGAGATAACTTCGTTCGAGTATCATTTGACACGAAGTGTGTATCT GTATCACTCCATGACTCATCAGAAATCACTTCGTTCTTTTATATTATTGC AGGATGGCAGCTCCCCTGACGTTGTCAGACTCCACAAGACCATTTGGAGG TCGTCGTCGTCTTGCTTTCATTTTTTAGTCTGGTCCTGGGGTCCCGCGTG GTGTTTGTAAAGTGAAATATGACAAACGGTGTTTGAAATAACGGCGTCAT TGACGCTTTCACATCGGTTCGGGTTCGGCAGAACAAAAAGGTTACCGGGC ACGGCAGAACAACACCTCCCGAAATGTTGCAGTATCATATCATACCATCA ACACACGGACAAGAGAGGGAGGTCGGCACGGCAACACTTCGAAGTGGCTG GCAATACATGCGAGTACGTACGTGCGCACTTCCAGGCGGCTCGAGATGAT GGAGAGATTTCCCCTGCAGGTGGCCACGCGGTCGGCACCAGGTTCCCGGG GGGGGGCAGACATTCAGGAAGACGCTGCTTGCTGCCGTTGCACCGCGAGA TAGAACTCAACCCCCCTTCGGCAGCCGTATTATACGATACAACTTTTTCA TGTCTTATCCTCTTGCAGCTGGTTCTTTCAGGGCGAACCGTTCTGCCACC AAAATCGTCCCGAACATATGTACCTGGTATATTTTTTTATCACATGTCAC CATACATGTGATATGTATCTCCGTTTTTGTTGGTCTTTCTCACACACAGC ACGAGTACCGGCCCGCTCTCGTCAAGTGCACGGCTCTTGTACCGTATCGA GACCTGGCTCATAGGCGGAACCCCAGCCTTTTCCCGCAGCCGCGAGGAAG AACAGTTTATCACGCACTATACAAACAGCAGCCAGAAATCGCAGCGTGTG TTGATGTGTGTACGTGGGCTTTTGCGTGCAATGTGTTTGTTGTCATTCCA CCCGTCTTTCTGGACGCCGGTCTTAATCTTTCGGCATCAACGTTGGGCGC ACCAGCCGGGGTCACGACAGACACGAAAGTCATCACAGGAGTTAAACCTG CTTTGCTTTGCTTTGCTTTCCTTTGCTTTGCTTTGCTTTGTTTTGTGTCA GGGCAACTTAGTTGATGTCATGGCTCTGCTGTCTTACTTTTTCATTTTTC ATTTTTCCAAACAAATGAGCTGTACCCACGGTACCCACTCCACCCCACCC CATCACCGAGTCTAGCACCGGTTGGCGTTTTGGGACCCTCGCGTTTCCCC CCCCCCCCCCGCCCCCTTGTTTGTTCTTGTGTTTTCCCCTGAACAAGAAG GACGCGCTGTGAGTGACCTACTCGAGTGTATTGTTTGGTATGAATGCCCG GAATCTGTTCTCGATCCCCATGTATTTTATCGCTGATCTTGATTCCCTTT GTTCCGATCGAATCAACACACACTGCGGCTTGGCCTCGGCGGTGTTGTTT CTCTGCGCTCTATCCTATCCACGCACGCCTGCGCGGCGGCGACGACGGCG ACGGTGACGACGACGTGAAACTTCGGCGGCGAACGGACAACAACAGCGCC TTCAAGCAACTTCTTGCTGGCTCCGGAGGGACCGCAACGGAAAACGCGGA TATGACCGCCCTGCTGTCCTCTGTCAGGTGAGTGCGCTGTGTCAAGAGGA GGAGGGGTGGGCCGCGGGGGGGGAATACAGAGAGAGAAATAGGGCGGAGG GAGAGACAGAGAGACGTGTATGCAAGACGGAGATGCAGAGAAAGAAAATC GAGACCTGGTAGCCCGTGAGGCCCAAACCGGTGTATCCGCTGTTCACACA GAAGCCACACTCTCCAGCGCGGGACATATATAGAGCTCCACATCTGCGTG TGTGTGTATCAAATTGTCTGGCAGGCAGTCTTTGAATCCTACGCGCGCCG GGGTCGTGATACACGCGGGGAGACTTTTGTTTTCCTACGACGTGCTTGTG TGGTCCGACATGTAGGCAGCCGGACGACCGTTGCTTATTAGTCTTGAGAC GAAAGCACGGGAGACCCCTGACTCGGTTTCCTCTGCTCCACATGTTGCGG AAACCTTAATAAACTACTCAAGGAATCAATATGCAGCGTCCGCAACAGCC TGACACGTCCCCAAACCCCCCCCCGCACCCCCCCCCCCACCCCCCGCCCC CGCTCCCGCCTGGCGGGCCCCTTCCTCGCCTGCTTTCGATTGATGTTTGT CGCTGGAATGCACCAATGGTAGGGACGAGGTGGCCCAGACGCTTAACATC CTCCTGGCTCTGAAGCGGTGGATCCAGGTGCAAGTACCGAAGATCGAGGA CGGGAACAACTTCGGCGTGAGCGTGCAGCTGGACGTCACCAAGGGGATCG ACGGGCTCACCGCTCCGTTGGCCACGAGCCTCGGGGAGCTGCCGGGGTAC TTCGAGAGCCGGGCCTCGGCGTGGGATAAGATCGCTACGAAGACCTCGAA AGAGAGCAAGACATCCACGTCTGAATCTAAGGAAACGGGGGGCAAGGTTC GTTTTTTCGGGGGGGGGGGGGCTACTGCCGTTGTTGACCTGCTGCTGCTG CTGCTGCGTCTGACATCGTCATGCGTTTTGAGAAACACACATCGGAGAAG AAACGCCTTCTGAGATGAGGCGGGACTCTGAGAGTTATGGTGCATCAGTC TTGAAGTATCTGCAAGGAGAGGATAGGTTCTAGTGACGTTTTGTTATGGA CACGAGGGGCAACGTCTGTGGTTGTTCACGGTATGCCGCTCGTGGTGCAC GTCGTCTGGAACGGGCGGGGAAAACCTCGTGGTTAGGGCAAGGTATTTGT TGTTTCGCCGTGGAGGTGTGCGGATTGGTTTGCGGATCTCCGGGTTGTAT TTGTTGTTGTTTTTTAGTCCTCCTGGGTCTTCGGGATTTATTTTTTATTT TTTATTTTTTATTTTATTTTTTCCTCTACTCTTTGCGTGCGTCAATTTCG ATCAGGACGGCGACTCCTCCAAGACTTCCGCGTCCTCCAGCACGGAGGAG AAGTCGTCCGAGTCTTCCGCCTCCCCGGACTCTTCCAACCATCTCGTCGC CCTCGACATCAAGTGGTTCGTCTCGCTGCACCACACGCTGCTGAGAGCTC GGGATTCCTTGGTGTGCGCGGCCGACATGATCGAGAAGAACATGGAGAAG TTGTTGCGTCCCAAGGGAACGAACACCCAGGGTGGGGGAATGTACTCGTT CTAGATTAAAATTTGCGACGACAGCAGCCGCAGTGCTTGTTGTTTTCGTG GAAATCACGCTGAAATGTACGAAGAGCGAAGTAGTATCACTTAAACAGTG GGGTATCAATAGGTTTTTGCGGGGGGGGTGTTTATCCTCGGCTGTGATAT TTTTTTCGTCGAGGTGTTGTAGTGCACAGGGCGCGTTGGTGTGTGATCGT CAAGGACACCGGTGTCGCTTCGTGCCGCGACGCTCGAACACGCAGGGATT TGGTAGGATACTTTTGGGAAAATGAAAGAAAGGCGTGCGCGGTTGCGGAT TCGTCCAGGTTGACGAAAGTGTACGTTTTTTTGTGGGATCGTGGGCGTTT TTGAAGCAGCGTCTGTCTCCTGGTGGTGATCAGCTACCGCGGTAATTTGG CTTGTATGTGCATTGGTCTTGTGCCAGTGTCGCTCGGAATACTGTGTGTG TCGGTTTTCGACTACGTTCTGTAGCACGGTGATAAATTTTGTTTAGTAGG CGAAACCAAAAGAAAAGAGAAACAACAGCAGTCTGCTTCTAGTGTCTTGC GTCTTCAAAAGGTTCCTTTTGCTCAAGAAAAAGTCCACAAAAATGAAAAA AAAAACGATTGAGGTCCGCGGTTGGCCAGAGAGCCCGACAGTCCCGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig189:155594..160992-

>mRNA_P-littoralis_Contig189.27.1 ID=mRNA_P-littoralis_Contig189.27.1|Name=mRNA_P-littoralis_Contig189.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=735bp|location=Sequence derived from alignment at P-littoralis_Contig189:155594..160992- (Pylaiella littoralis U1_48)
ATGAGCTTGCTAACGACGATCAGCGTGAGGGAAGGCGAAGAAGCTCTTGA
GAAAGTGCCCGCGCGAGTGGAGCAGATGCAGTTGCTGTTGGATGGAAAAT
TTGCCTACACGAGCCTGACGGATGTCGAGAGCGCCTTCAAGCAACTTCTT
GCTGGCTCCGGAGGGACCGCAACGGAAAACGCGGATATGACCGCCCTGCT
GTCCTCTGTCAGGGACGAGGTGGCCCAGACGCTTAACATCCTCCTGGCTC
TGAAGCGGTGGATCCAGGTGCAAGTACCGAAGATCGAGGACGGGAACAAC
TTCGGCGTGAGCGTGCAGCTGGACGTCACCAAGGGGATCGACGGGCTCAC
CGCTCCGTTGGCCACGAGCCTCGGGGAGCTGCCGGGGTACTTCGAGAGCC
GGGCCTCGGCGTGGGATAAGATCGCTACGAAGACCTCGAAAGAGAGCAAG
ACATCCACGTCTGAATCTAAGGAAACGGGGGGCAAGGACGGCGACTCCTC
CAAGACTTCCGCGTCCTCCAGCACGGAGGAGAAGTCGTCCGAGTCTTCCG
CCTCCCCGGACTCTTCCAACCATCTCGTCGCCCTCGACATCAAGTGGTTC
GTCTCGCTGCACCACACGCTGCTGAGAGCTCGGGATTCCTTGGTGTGCGC
GGCCGACATGATCGAGAAGAACATGGAGAAGTTGTTGCGTCCCAAGGGAA
CGAACACCCAGGGTGGGGGAATGTACTCGTTCTAG
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