mRNA_P-littoralis_Contig188.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig188.22.1
Unique NamemRNA_P-littoralis_Contig188.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig188.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig188contigP-littoralis_Contig188:115108..117611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1755
Hectar predicted targeting categorysignal peptide
Exons3
Cds size807
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789897.7874565-UTR-P-littoralis_Contig188:115107..1157761680789897.7874565-UTR-P-littoralis_Contig188:115107..115776Pylaiella littoralis U1_48UTRP-littoralis_Contig188 115108..115776 -
1680789897.7979422-UTR-P-littoralis_Contig188:115934..1160211680789897.7979422-UTR-P-littoralis_Contig188:115934..116021Pylaiella littoralis U1_48UTRP-littoralis_Contig188 115935..116021 -
1680789897.80757-UTR-P-littoralis_Contig188:116612..1166871680789897.80757-UTR-P-littoralis_Contig188:116612..116687Pylaiella littoralis U1_48UTRP-littoralis_Contig188 116613..116687 -
1680789897.826418-UTR-P-littoralis_Contig188:117494..1176111680789897.826418-UTR-P-littoralis_Contig188:117494..117611Pylaiella littoralis U1_48UTRP-littoralis_Contig188 117495..117611 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789897.8176801-CDS-P-littoralis_Contig188:116687..1174941680789897.8176801-CDS-P-littoralis_Contig188:116687..117494Pylaiella littoralis U1_48CDSP-littoralis_Contig188 116688..117494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig188.22.1prot_P-littoralis_Contig188.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig188 116688..117494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig188.22.1

>prot_P-littoralis_Contig188.22.1 ID=prot_P-littoralis_Contig188.22.1|Name=mRNA_P-littoralis_Contig188.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=269bp
MPLFVNSRVLKRAVPALMAALILTLVGTLPASDVFPSNGNTEHTPAYLRC
YETEGNLFACHAMGIIAASSPTLVSPAKNRTDGLAAKEMRMQDARSSQLY
QAGSTVMTSRIPVFGDYLAPDAASPMVAIGACHPEASDAMDIWDEQWEMI
LNDLEYFAHRPSSPADVISAALRETATATWESTHSLVRRWLSRSKVFIFK
TAANAWTFLVTSISTDLDVVDVADDASLICDSSAAKEWLGNALERTSRGM
ASTLHSLRSFEYCRAMRY*
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mRNA from alignment at P-littoralis_Contig188:115108..117611-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig188.22.1 ID=mRNA_P-littoralis_Contig188.22.1|Name=mRNA_P-littoralis_Contig188.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2504bp|location=Sequence derived from alignment at P-littoralis_Contig188:115108..117611- (Pylaiella littoralis U1_48)
TCTTCTTCTGCTTCAAAACAACCGACCCGAAAGAGAGCAGCACACGGTCA
CTAGCTCTGACTGCGGGACAACTAACTACCTGCAATACGACGGAAAAACA
GTGTACACACAGCAACCATGCCGCTCTTCGTAAACTCTCGTGTGCTCAAG
CGTGCTGTGCCTGCACTCATGGCGGCGCTTATCCTCACCCTCGTCGGCAC
CCTCCCTGCTTCCGACGTCTTCCCCAGCAACGGCAACACCGAGCACACCC
CTGCATATCTCCGCTGCTATGAGACCGAGGGCAACCTCTTCGCGTGTCAC
GCGATGGGGATCATTGCCGCCAGCAGCCCCACTCTGGTCAGTCCTGCCAA
AAACAGGACAGACGGCCTCGCGGCCAAAGAGATGAGGATGCAGGATGCTC
GGAGCTCCCAGCTTTATCAAGCGGGCTCTACCGTCATGACCTCACGGATA
CCCGTGTTCGGAGACTATCTCGCGCCGGACGCCGCCTCGCCGATGGTCGC
GATTGGTGCGTGCCATCCGGAAGCCAGCGACGCCATGGACATCTGGGATG
AGCAGTGGGAGATGATTCTCAACGACCTCGAGTACTTCGCCCATCGCCCG
TCTTCTCCGGCCGATGTCATCTCTGCTGCTCTGCGGGAAACCGCCACCGC
CACGTGGGAAAGCACTCACAGCCTGGTCCGAAGGTGGCTCTCACGGAGCA
AGGTGTTCATCTTCAAGACGGCTGCCAATGCTTGGACCTTCCTCGTCACC
TCGATTTCCACCGATCTTGACGTTGTTGATGTCGCGGATGATGCGAGCCT
GATTTGCGACAGCAGTGCTGCAAAGGAATGGCTCGGAAATGCTCTCGAGC
GCACGAGCAGGGGGATGGCATCGACCTTGCATTCTCTGCGGAGCTTCGAG
TACTGCCGCGCGATGAGGTACTGAGCCGGCTGGTCGGCGCAAGTGAGCTG
GGTGCTAAAGATGCGGGTCGCCAGGAGGCTGGGCGAGGCGAAAGATATGG
TGGGTGGGTGTCGTGGAGTATTTTTTTTGTATGATTGATGTTTATTTCAC
ACCTGTACTTTGTAGTTTTGCCTTCTTGACTGTCTGTCTGTGTGTGTTGT
TCTTGTTCTTGTTCTTGTTCTTCTCCTTCTTCTTGTTCTTCTCCTTGTTG
TTGTTGTTGTGTTGATGTTTTTTTTCTTGCTCTTGTTGTTGTTCCTGTTG
TTGTTGTTCTTGGTCTTGTTTTTTTTTGTTGGTTGTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGGTGTTGTTGGCGTTGTTGTTGGTGTTGTTGTTG
GTGTTGGTGGTGGTGTTGGTGTTTGTGTTTGTGTTTTGGTTCGTGCTCTT
GTGCTTATGCTCGTCGTTCTTTGCATATGCTTGTCTTAGTTTTGGTGTTG
GTGTCTGTTTTTGTATTTGTGTTGTGTTTTTGTTTTTGTTTTTGGTTGTG
TTTTTGGTCCGTTTTAATTTTGTTTTGGTTATGTTATTTTGGTTGGAGGT
ATGATTGATAAACGTTCCCATCACAACGACAAATCGACCGCCATTCCACG
TACGTACCCCCTCCCGCCTGTATGCTTGTGCAACCCGTAGTTATTCGTGA
GCGGGGTGTGGAAGGCGATTGCCGGAGCTTTTGAGTGTGGGAAGGATATC
TGCTCTTCCTCAGCCCAGCCCAAAAAGGTGGGAAATTTGTGCGGTGTGTA
GAGTACACCTCTAGCACGTCACAGCATTTGCGTGCATATCGTACCGTCGA
ATGATTAAGGAAAGAAGCCTGATGGTCCTCTTTCCCCTTTCTGTTACTGC
TTTGTGTGCTCGCACTTCCTGATCCAAAAATGTAGGCATCATGGTGGTCA
TCTCCGATCGGAGGAGGAGAGTTCCCCGACAAGGGCAGCATGCCCTACCA
GTTGCAGTATGACGGGTGGATTTGAGCGCTTTTTCGACGGAAGGGACTTT
CATTAACGTGGCTCCCGTTGTTTCGAAGCAGCAGCATCATCAGCATCATC
ATCACCAGCAGCAGCAGCGCCAACAACAACAACTGTAGCAGAGGGGGTTA
GTATTTGTATGTTTGGAAGTTGGTAACGAAAGCAATTTCACTTTACGTCG
GTCGTTCGCTCACAGCAGGTGTACTACTCTCTGGCGACAAATAGTGTACA
GCAGTGATGAGGACGGGGTGCTGCCGAATCCGTGGATAGAATAGTGTTGG
AGGGGAGGTTACTCCCCCGGATCGATCGCCGGCCTCGGATATGTCTTTGT
TCATAGGGGATTTGTCACATGAGTTGGATTCTCCCTATGGTATGCATGGA
AGTGGATGATCTGGAATGATTTGATTTTTTCTACGGATGTGCGCGTACCC
CGGTGCAGAGCCATTTGTTATTTCGGGGAGAACGGGGGGTTGCCATTTCG
TTTGTTTTTGCTCACTTGCATACCCATAGCCTTCAACTGGGCTTCAGTTG
CCTCGGTTATATTAGCGGTCACAATATGCGTTAACCGCAGGTTAAGGTTC
CGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig188:115108..117611-

>mRNA_P-littoralis_Contig188.22.1 ID=mRNA_P-littoralis_Contig188.22.1|Name=mRNA_P-littoralis_Contig188.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=807bp|location=Sequence derived from alignment at P-littoralis_Contig188:115108..117611- (Pylaiella littoralis U1_48)
ATGCCGCTCTTCGTAAACTCTCGTGTGCTCAAGCGTGCTGTGCCTGCACT
CATGGCGGCGCTTATCCTCACCCTCGTCGGCACCCTCCCTGCTTCCGACG
TCTTCCCCAGCAACGGCAACACCGAGCACACCCCTGCATATCTCCGCTGC
TATGAGACCGAGGGCAACCTCTTCGCGTGTCACGCGATGGGGATCATTGC
CGCCAGCAGCCCCACTCTGGTCAGTCCTGCCAAAAACAGGACAGACGGCC
TCGCGGCCAAAGAGATGAGGATGCAGGATGCTCGGAGCTCCCAGCTTTAT
CAAGCGGGCTCTACCGTCATGACCTCACGGATACCCGTGTTCGGAGACTA
TCTCGCGCCGGACGCCGCCTCGCCGATGGTCGCGATTGGTGCGTGCCATC
CGGAAGCCAGCGACGCCATGGACATCTGGGATGAGCAGTGGGAGATGATT
CTCAACGACCTCGAGTACTTCGCCCATCGCCCGTCTTCTCCGGCCGATGT
CATCTCTGCTGCTCTGCGGGAAACCGCCACCGCCACGTGGGAAAGCACTC
ACAGCCTGGTCCGAAGGTGGCTCTCACGGAGCAAGGTGTTCATCTTCAAG
ACGGCTGCCAATGCTTGGACCTTCCTCGTCACCTCGATTTCCACCGATCT
TGACGTTGTTGATGTCGCGGATGATGCGAGCCTGATTTGCGACAGCAGTG
CTGCAAAGGAATGGCTCGGAAATGCTCTCGAGCGCACGAGCAGGGGGATG
GCATCGACCTTGCATTCTCTGCGGAGCTTCGAGTACTGCCGCGCGATGAG
GTACTGA
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