mRNA_P-littoralis_Contig186.150.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig186.150.1
Unique NamemRNA_P-littoralis_Contig186.150.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig186.150.1 vs. uniprot
Match: D7FKT8_ECTSI (TLC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT8_ECTSI)

HSP 1 Score: 539 bits (1389), Expect = 2.210e-183
Identity = 272/315 (86.35%), Postives = 289/315 (91.75%), Query Frame = 1
Query:  190 VGAVEVAAMSDEDVLSWKRGWIPSAIALGLTFLPLPSVGLQAFEAGWMRGLATFIALEVVRVGAVGLLPYWWRDVAGRADPLTDRSREQFGGQLTSLLLSSYLTWSIIRWDWQLTTKIPFIQTVGEDHTGVVFSLMAMMLSYIVHDTWHLIRSWRVNRNRVMLIHHFVFAVISIMGMRFMQLPIHMRIHFIMFSAEMSTPLLNGRWLLRHIGLVHKSHFIMIATSFSFLVLFLATRIMMYLFMILDIIQLYAELIMPMPLRSIFLGAVVVSYGVNLYWASLIVGALFGKEGDGKPRGGPTLTLGHPDT-KKEKDS 1131
            V A E AAMS+ DVLSWKRGWIPSAIA+ L FLPL SVGL+AFE GW RG+A F+ALEVVRVGAVGLLPYWWR++A R  PLTDRSREQFGGQLTSLL+SSYLTWSIIRWDWQLT K+PFIQTVGEDHTGVVFSLMA+MLSYIVHDTWHL+RSWRVNRNRVMLIHHFVFAVISIMGMRF QLPIHMRIHFIMFSAEMSTPLLNGRWL+RHIGLVHKSH IMIATSFSFLVLFL TRIM+YLFMILDIIQLYAELIMPMPLRS+FLGAVVVSY VNLYWA LI+GALFG EG  K RGGPTLT+ HPDT KK KD+
Sbjct:  119 VAAAETAAMSNNDVLSWKRGWIPSAIAVSLLFLPLESVGLEAFEPGWERGIAAFVALEVVRVGAVGLLPYWWREIARRTGPLTDRSREQFGGQLTSLLVSSYLTWSIIRWDWQLTNKLPFIQTVGEDHTGVVFSLMAIMLSYIVHDTWHLVRSWRVNRNRVMLIHHFVFAVISIMGMRFRQLPIHMRIHFIMFSAEMSTPLLNGRWLMRHIGLVHKSHVIMIATSFSFLVLFLVTRIMLYLFMILDIIQLYAELIMPMPLRSVFLGAVVVSYVVNLYWAWLIIGALFGNEG--KRRGGPTLTVNHPDTQKKSKDA 431          
BLAST of mRNA_P-littoralis_Contig186.150.1 vs. uniprot
Match: A0A6H5K373_9PHAE (TLC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K373_9PHAE)

HSP 1 Score: 539 bits (1388), Expect = 6.360e-183
Identity = 276/336 (82.14%), Postives = 295/336 (87.80%), Query Frame = 1
Query:  151 TLPERIP--------GVGTDLVGAVEVAAMSDEDVLSWKRGWIPSAIALGLTFLPLPSVGLQAFEAGWMRGLATFIALEVVRVGAVGLLPYWWRDVAGRADPLTDRSREQFGGQLTSLLLSSYLTWSIIRWDWQLTTKIPFIQTVGEDHTGVVFSLMAMMLSYIVHDTWHLIRSWRVNRNRVMLIHHFVFAVISIMGMRFMQLPIHMRIHFIMFSAEMSTPLLNGRWLLRHIGLVHKSHFIMIATSFSFLVLFLATRIMMYLFMILDIIQLYAELIMPMPLRSIFLGAVVVSYGVNLYWASLIVGALFGKEGDGKPRGGPTLTLGHPDT-KKEKDS 1131
            TL +R+P        G+   +V A E AAMS+ DVLSWKRGWIPSAIA+ L FLPL SVGL+ FE GW RG+A F+ALEVVRVGAV LLPYWWRDVA R  PLTDRSREQFGGQLTSLL+SSYLTWSIIRWDWQLT K+PFIQTVGEDHTGVVFSLMA+MLSYIVHDTWHL+RSWRVNRNRVMLIHHFVFAVISIMGMRF QLPIHMRIHFIMFSAEMSTPLLNGRWL+RHIGLVHKSH IMIATSFSFL LFL TRI+MYLFMILDIIQLYAELIMPMPLRS+FLGAVVVSY VNLYWA LI+GALFG EG  K RGGPTLT+ HPDT KK KD+
Sbjct:  118 TLKQRLPVGARGNREGLAELVVAAAETAAMSNNDVLSWKRGWIPSAIAVSLLFLPLESVGLEVFEPGWERGIAAFVALEVVRVGAVALLPYWWRDVARRTGPLTDRSREQFGGQLTSLLVSSYLTWSIIRWDWQLTNKLPFIQTVGEDHTGVVFSLMAIMLSYIVHDTWHLVRSWRVNRNRVMLIHHFVFAVISIMGMRFRQLPIHMRIHFIMFSAEMSTPLLNGRWLMRHIGLVHKSHVIMIATSFSFLALFLVTRILMYLFMILDIIQLYAELIMPMPLRSVFLGAVVVSYVVNLYWAWLIIGALFGNEG--KRRGGPTLTVNHPDTQKKSKDT 451          
BLAST of mRNA_P-littoralis_Contig186.150.1 vs. uniprot
Match: A0A835ZB74_9STRA (TLC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB74_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.570e-33
Identity = 101/311 (32.48%), Postives = 159/311 (51.13%), Query Frame = 1
Query:  205 VAAMSDEDVLSWKRGWIPSAIALGLTFLPLPSVGLQAFEAGWMRGLATFIALEVVRVGAVGLLPYWWRDVAGRADPLTDRS-REQFGGQLTSLLLSSYLTWSIIRWDWQLTTKIPFIQTVGE-DHTGVVFSLMAMMLSYIVHDTWHLIRSWRVNRNRVMLIHHFVFAVISIMGMRFMQLPIHMRIHFIMFSAEMSTPLLNGRWLLRHIGLVHKSHFIMIATSFSFLVLFLATRIMMYLFMILDII------QLYAELI-------------------------MPMPLRSIFLGAVVVSYGVNLYWASLIV 1038
            +AA   + + S   GWIP A+ L   +     V     ++ W    +T+ A E +R+ AV LLP WWR   G A    +R+ RE FG Q  SL +S+Y    + +     + ++PF+ T  + D   ++  +  ++ +Y++ DT HLIR+W ++ N  ML+HH +F+V+  +G    QLP H RIH ++FSAE+STPLLN RW+LR +   H    ++   S +F +LFL +R+ +Y  +I D++      QL   L+                          P   + IF  AV  SY +NLYW  +I+
Sbjct:    1 MAAAKGDGLRSAAWGWIPGALVLAGLYCT--GVFDTEDKSLWHTAWSTYAACEALRMVAVWLLPLWWRRRRGGAP---ERAIRESFGTQAMSLAVSTYTVAHLAQLRLYASWELPFLHTAADADCIALIHHMTVVLGTYVICDTSHLIRTWHLSSNPAMLLHHAIFSVVLGLGAANPQLPPHYRIHVVLFSAELSTPLLNLRWILRWVA--HYKGRLVAPLSMAFALLFLFSRVGLYGALIADLVKKQPHRQLDVRLLRAACCLHTSFCGSSAWPVKTRRKLSFPRAQQDIFCAAVFCSYLLNLYWLIIII 304          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig186.150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKT8_ECTSI2.210e-18386.35TLC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K373_9PHAE6.360e-18382.14TLC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZB74_9STRA2.570e-3332.48TLC domain-containing protein n=1 Tax=Tribonema mi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig186contigP-littoralis_Contig186:423051..429364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2306
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionTRAM/LAG1/CLN8 homology domain
Ec32 orthologEc-17_001340.1
Cds size921
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789892.965818-UTR-P-littoralis_Contig186:423050..4242221680789892.965818-UTR-P-littoralis_Contig186:423050..424222Pylaiella littoralis U1_48UTRP-littoralis_Contig186 423051..424222 -
1680789892.9891443-UTR-P-littoralis_Contig186:425143..4252451680789892.9891443-UTR-P-littoralis_Contig186:425143..425245Pylaiella littoralis U1_48UTRP-littoralis_Contig186 425144..425245 -
1680789893.0011632-UTR-P-littoralis_Contig186:429253..4293641680789893.0011632-UTR-P-littoralis_Contig186:429253..429364Pylaiella littoralis U1_48UTRP-littoralis_Contig186 429254..429364 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789892.9767718-CDS-P-littoralis_Contig186:424222..4251431680789892.9767718-CDS-P-littoralis_Contig186:424222..425143Pylaiella littoralis U1_48CDSP-littoralis_Contig186 424223..425143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig186.150.1prot_P-littoralis_Contig186.150.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig186 424223..425143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig186.150.1

>prot_P-littoralis_Contig186.150.1 ID=prot_P-littoralis_Contig186.150.1|Name=mRNA_P-littoralis_Contig186.150.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=307bp
MSDEDVLSWKRGWIPSAIALGLTFLPLPSVGLQAFEAGWMRGLATFIALE
VVRVGAVGLLPYWWRDVAGRADPLTDRSREQFGGQLTSLLLSSYLTWSII
RWDWQLTTKIPFIQTVGEDHTGVVFSLMAMMLSYIVHDTWHLIRSWRVNR
NRVMLIHHFVFAVISIMGMRFMQLPIHMRIHFIMFSAEMSTPLLNGRWLL
RHIGLVHKSHFIMIATSFSFLVLFLATRIMMYLFMILDIIQLYAELIMPM
PLRSIFLGAVVVSYGVNLYWASLIVGALFGKEGDGKPRGGPTLTLGHPDT
KKEKDS*
back to top

mRNA from alignment at P-littoralis_Contig186:423051..429364-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig186.150.1 ID=mRNA_P-littoralis_Contig186.150.1|Name=mRNA_P-littoralis_Contig186.150.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6314bp|location=Sequence derived from alignment at P-littoralis_Contig186:423051..429364- (Pylaiella littoralis U1_48)
CGCTGTAGCACTTGCCATTTCCAATGCCATGCATGGCATGCGTGTCCTCT TCTCATTCTGTTCTGTCTGTTGTGTTACTCTACCTGCCCGACCAGCATCA ACAGCAGACAGGTGAGTTGGCTGATGGCGAGAAGGTGACGCAGTTTTACG TGGTCTGAGTTCAGCCAGTAGGTACTCGTCGTGACGGCTGTCAACTGCTA CATTCGAATTCGTGGAATACACCTCAACATCCGGCACTTCTGTGGATCAC TTCTGATTCACCCCTTGTCATCAACTTACCCACAGCACGACCGACACGAA AAGACGGTCCTCGGTGAATGCGGGCCTCATTGTCGACACCCGACGCTTGA CACGATATTCCAAGAGAGCGTGTGCTCACACCATGATGTGCACATATTTG CCCCAACGGCAGAAGGCAAGACAGCAGTACTGTAGGGTGCACGGACATGC GGTGTAATTTCGCATGTTCCACCCACATAGATACCAGGAACCAGGTATCA ATCTATGACACGATGGATGCTGTGCTGTTTGGTCACACAATCAAGAGCCC AGACATGCAGAGCCGGAGTCGTCAACGAAAAGTGAATCTAGTTTTCAAAA CCAAATCAACCTCGTTTCTTTTTCGTGCTGAGGTAGTACGGCGGTGCTTT GCCTACATATATAAACTCCCGTGTAAGGCTACGTATTATGTGTCGAATCT AGAAATCAAAACTGATTCGTTTTGATATTGGGCCCAGATCTGGCATCTTA CAGTACATTTATGCGATTAGAAACGGGCCATTTCTGATATACTCCGTAAA CATTTTCAATAATCATTTTTGATCCAGCACCAGCTCAGAAATGAGCCCCA TTTCTGATCTACTCCGCACATCAAAAATGATTGTTGAAAACGATTGAGAC TCCGACGCAAGCCATCATACGACACAAGCACCCACAGCAGCAGCAGTTGT TGATTGTTGTCGATTCTCACATTAGCTCATCGCCAAAATCTAGCCCGTGG TCACAAAAAGTGCCGAGCCCTAGGAAGATCCAACAAACAGAAAGAAACTA CAAGGGAATACCCAAGAAAGACCGAAGAAGATACACCTTCCTACGCGGTG TGCATCACTGAACTACAGCAGTCACAGCAGTACCAACAGCAAACGTGCTT CCAGCGTCGTTCATTTGACTATAACATCGTGTTCAGTCTCCTCCTGCCCC ACTTATAGCAAGCAGTCAGTAGGCAGCTGCAGACTACAGCAGCAGTTAGT TGCTGTCTGGAGTGCTGCCTGCACGTACAAGTAGCCCCGGCAATCGGAGA AGACAGAAAAAAGAAAAAACACAAAAACACACACGTATCATCAGATGTTG TCGAGGATGGTGTCTCCATGCCGTCCTTGCGACGCTGGTGATGATGTCGC CCTAAACATGTCCTCCTTGTCTGGGTCCACGTCGCTGTTGGCGTTGCCCA AGGCCACATCACCAGTACCATGCTCTCGTAACGCTTCTTCACTGCCGGCG TTGCCTAAGGTCACCTCCATCACCGCCGCTCTCTCACATAACAGCTCTTT CTTGTTGTTCCTTTCCAATCAGTTCCCTTCAACTCCGATGTGCACTTGAG GTACAAGTACAAGTCTTCTGAAAAAAAAGTTCACGCTCGGAGTGAGATCG ACCAAGCTTTTCCCCGTTCGTCGCTGCTCGTCTACCTCCGTCCTTGGGTG CGAAACTGGTTACTGGACGGCACAATCCCTCTGTGCATCCTAGATCGTAC CGTCTTTTCACCTGTGGTGTCGCCTGCCCCCGCGCACAAATGCTGGTGAT GTACATTGCTGTACTGCCGCTGTAACCAAAAGGCCCGCGAATCCGCACAT TTGCACCTGGTACACCAACTGCGACCCAACTCTACCGCCACGCCCGTGGC GTTCGACCACAGCGCAGCAGCAAGAAGGTATCACTCCTTCAGGGTGAGTC CGGCCTTCCACCCGCCAGAAAGACCCCCCCAACTCGCTTTGGGTCATCCT TACAGCAGACCTTGCCTAGGCAGCGAGGGAACGCAGAGAAGTACTGCCAC ATCACTACTGCTGCTGCTGCTGCTACTTATCGCGGGCGGTCAGCTTGTTG CTTCCTCGTCGTCGCCCGCCAGCAGCGTGGCCCTTCATCCCATGGCGGCA GCAGCAGAGAGAGAGCGACTGATGATTGCGTTTCACCTCAAGCACGCGTG CACTGCTGCTGTGCAGATAGATGCCCTGAATATGAATCATCAGCAGTATT GTTCTTGCTACGAATAGCCTCCCAAAACAAGCCTTGAAATAGGTCTGGGT GTACTCCTAGTAGTTCAGCGGGAGGGCAACACATTGTCTAGATTTATGGT TTGCGCGCGGTGCTGCTCTGTTCTGGCTGTGACCCAGCGCGTCGTACTCC ATCCCGAGAGGGTGCTGCGCTCGCTCCAAATTTTTGAAATGTGATGTACT GCTGTATACCCAAACGGCTCTTGGGATCCTACATACTTCGAAGTAAACAA TACTGCTGTCCGAAACATACTTTTTTGAGTTTGATAAATTTCATTTACAC ATAAGTTCCGACGTTGATACCACCCTGTTGGAATTGTCAATATCAAAAGC GAATCAGATTTGATAGTTTGATTTTTACACATAATAAGTAGCCTAATCGC CCCCTGCCTCCTTCCTCTGACTTTCTGCCGGGGTTGCACCTTATTGTAAT AGAGAGCCAGGCGTTCTGGCGTTCCACTCGTCATCGCGTCTTACACTAGC ACTGAAGGAGTACACCTACACCTTGCGATATACTCGGAGTACTTCGTATT CATCTACTGCTGCGACCGAGTGTTAAGCTTCGTATAACATGCATCTACTG CTGTACCACAAATATCGTATCTTCGTAACAGCAGTACCTCGCTCTATGTC AAGAACAACGGCAGACTCCTTTGGAACCCCGTTCTAGTCTCCACCTGTTT TATTCCAGTGGATGCACCAGCTCAACCCGAAACTAATTGGAGATAGCCTC GGGACTGACGGCTGCGTTGGTTGTTGGTTGTGACTGTGAGGTGAAATTTA GACTTCTTTTGGTTGAGAATGATCTTGGAAATTTCCCGCTGAGGTTGCTC CGATTCTGATCCCGCCAGTCAGCGGCACACCCTGTGTGCCAGAAACGCTG AGGCAACCTGATGAGCGGCGATACTGCTGTTTACTTGCGAGGTGCTGGTC TCACAAAAAGTAAAGACTCGGCTGACCAATCAACGTCGCGAGAGGCTCAA ATAAAGAGGTTGCGCGAAAGACAAACCGGTGTTTCTTTTTCTTTTATTCC TGCATACACATCGATTCTAACTTTCTAATTTCCTTTCTTGGTTCCCCGTT TGCATAGGGCTCCATGACTGCAACAAAATGAATGTTTGATTCAAGATTTC AAAGTCTGGAGTTTTGAAATACAATAGATGCAGCACTGCCGTTTTATTCT GTGAAGACAGGAGTGTATTCGTCACTCTCTAGACGAGGAAGATGCAAAGT AGATTAGCAACAAACGCAAAGAGTAGTTCACTCGTTTGTTTTCTGGAGTT TGCCCTCATCTATTATTTGCCTGTTTTAGGCGCGACGGAGTTCAAAGATG GTTGAGAACTATCACTGCATCCCCACTCTCGCCATCAATTCCGACACGCT TCACAAGAACGCCTCTCCTTCTGAAAGCTGCCTTTGTTTTGTTGAGTTGG GTTGGCTTTTTTCAAACTGACTTTTTGGCCGCTGCAACAGGGCCTGCAAT GGTGAATATCTTTTCCCTTGATATTCGTCTGTGTTCGTCGCGACATCGCC ACTCGACGGGCATTTCGTGAGTCTTTGACACCCCGTGCTGAAGACTTGAG GTATTGGTTGTCCTCTGAACATCGAATAGACTTGTCAGGGGGCTCCCACG TCAGCCATTTGGTACTTTAAAGTGTTGTGCAGCGGGCCGCGTACAGCCCA CCGAACCTAGATGCACTTCTCGGTGCCTATTTGCTGCCTGCTCAGCAAGA TACTGGCGGACGTAATGGCGCCACATGAGGCAAGGGAGGTTCAATAACTG GCCAAAGCTGATTTTGTTTTTCCGTTCGTCTTCGGTTTTGTCCCTAATGT CTTCCCTGTTTTCGTGAAGGTTGTAAAGAACAGTCGGTATTTTTGCTACG CTGCGTCAACACTGCCAGAAAGGATACCGGGCGTCGGCACAGACCTTGTT GGAGCGGTGGAAGTGGCAGCCATGAGCGACGAGGATGTTCTGTCGTGGAA GCGGGGCTGGATTCCCAGTGCCATCGCATTGGGCTTGACCTTCCTGCCGC TACCGTCTGTCGGGCTACAGGCGTTCGAGGCTGGATGGATGAGGGGACTA GCGACATTCATCGCCCTGGAGGTGGTGCGGGTGGGGGCGGTGGGACTGCT GCCCTACTGGTGGAGGGATGTCGCGGGGAGGGCGGATCCGTTGACGGACA GAAGCCGGGAGCAATTCGGAGGGCAGCTCACGTCGCTCCTGCTGTCAAGC TACCTTACGTGGAGTATCATTAGGTGGGATTGGCAGCTGACGACCAAGAT TCCTTTTATCCAAACGGTGGGGGAGGACCACACGGGGGTAGTGTTCAGCC TGATGGCAATGATGCTGTCGTACATCGTGCACGACACGTGGCACCTGATA CGGTCGTGGCGGGTGAACCGCAACCGCGTGATGCTGATCCACCACTTCGT GTTCGCCGTCATCAGCATCATGGGGATGAGGTTCATGCAGCTGCCAATAC ACATGCGGATCCACTTCATCATGTTCTCGGCCGAGATGTCCACCCCGCTG CTTAACGGCCGCTGGCTGCTGCGCCACATCGGGCTTGTTCATAAGTCGCA CTTCATTATGATTGCGACGTCCTTCTCTTTTCTCGTCCTCTTTCTGGCAA CACGGATAATGATGTATCTCTTCATGATTCTCGACATTATCCAGCTGTAC GCGGAGCTTATCATGCCGATGCCCCTGCGTTCCATCTTCCTGGGGGCGGT GGTTGTCTCCTACGGAGTAAATCTATACTGGGCCTCGCTGATCGTGGGCG CACTCTTCGGGAAGGAGGGCGATGGAAAGCCAAGGGGGGGACCGACACTA ACGCTGGGTCACCCAGACACCAAGAAGGAGAAGGACTCATGACGAAGCCT TTGCCAGCCCGCCGCCTACTGCTAGTCAAAAGTAGCCTGGGTTTTTGCCG TGTGTGTTCTTAATTGATGTACTTCCTACCGCATGGACTGGACTTGTCCT TGAGCGTTTTACGCTTGGTTTTGTTTCACTTCCCCGCTGGATTGTCTTCT AGGCTCCGTTGGAAGGACGTGTGGGGAGCGCGGGGGGATCACGGACTTGG GGACGTGATTATGGACCTGTGGTATCCGAGGTGGCTGGAAGCAAGTTTCT TTATGTGACCAAGAGCGTGTGGGGGCTTGGCGTGAGGGGAATGAGGCCGT GGGTTTATCGTTGCACGCCCGGGGCGTTGGTTTTGCTCTGGCTACATCAG TCATCGTTAGAACTGGAAACGGGTGACCCTCGTGTGTCCCGTTAATTGGC ATGAAGTTTCCCATCGCTTGGCAATATTGCCTCCCTTGTGTGCTTGGTTG GAGTTTGTCTCTGTGTATCTATGCGTGTGTGCCTTTCGTGTTGTTAATGT GGGTGTCGGCTTTACATCCATGCCTCGCCCTCTACATTTCCCCGCGCGCT CAGCGGAGGGGAAACGGGACCGAAACTTTTATTTTCCTGTAAGTAAAAGG ATGGGTAGGTGTTTTGTATGTTTTGTGGTGGGTTTGAGAGGTGGTTTCAC TACCTGCAACCATGGTGTGATGCGTAGGCAACTAATGTACACCGGCTGTT TGTAGTTCTGCCACAATTCAAAAATGATTCCTTGAATTTATTAGTTTGAT AGTTCAGCCAACACCCAAGTACTTGGTTGTCTCATACTGTATATGACATC ACCACCCCCTCCTTGATGCTATTCTGCTCAACCTCTGCGGATAGGCAAGT GCATTTCGCGCCACGAATAACGTCCCGGTATATATGTGGAGTGAGCGTCG TTTTCTGGTTTCTTCTGTGCAGGGCAACCAACAGCGTTGTCTATTTGTTT TCAAAGTGTTTTTTGTGCTGCCGGGTTGTTGATGGAGGCAAACATGTGTT TTCGGTGTTCCAAATCTTGCAACATTAAAATACGAAAACCCCGGCCTCGA ATTGTAAACGGCCGATTCCGCAAGCAAAGTAAAATTAGCCCGCCGGGCGA AAATGGTGTACAAGTACTACTCAGTGATGGCGAAAGACGCTCGAAGGTGA AATCCTATTCATGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig186:423051..429364-

>mRNA_P-littoralis_Contig186.150.1 ID=mRNA_P-littoralis_Contig186.150.1|Name=mRNA_P-littoralis_Contig186.150.1|organism=Pylaiella littoralis U1_48|type=CDS|length=921bp|location=Sequence derived from alignment at P-littoralis_Contig186:423051..429364- (Pylaiella littoralis U1_48)
ATGAGCGACGAGGATGTTCTGTCGTGGAAGCGGGGCTGGATTCCCAGTGC
CATCGCATTGGGCTTGACCTTCCTGCCGCTACCGTCTGTCGGGCTACAGG
CGTTCGAGGCTGGATGGATGAGGGGACTAGCGACATTCATCGCCCTGGAG
GTGGTGCGGGTGGGGGCGGTGGGACTGCTGCCCTACTGGTGGAGGGATGT
CGCGGGGAGGGCGGATCCGTTGACGGACAGAAGCCGGGAGCAATTCGGAG
GGCAGCTCACGTCGCTCCTGCTGTCAAGCTACCTTACGTGGAGTATCATT
AGGTGGGATTGGCAGCTGACGACCAAGATTCCTTTTATCCAAACGGTGGG
GGAGGACCACACGGGGGTAGTGTTCAGCCTGATGGCAATGATGCTGTCGT
ACATCGTGCACGACACGTGGCACCTGATACGGTCGTGGCGGGTGAACCGC
AACCGCGTGATGCTGATCCACCACTTCGTGTTCGCCGTCATCAGCATCAT
GGGGATGAGGTTCATGCAGCTGCCAATACACATGCGGATCCACTTCATCA
TGTTCTCGGCCGAGATGTCCACCCCGCTGCTTAACGGCCGCTGGCTGCTG
CGCCACATCGGGCTTGTTCATAAGTCGCACTTCATTATGATTGCGACGTC
CTTCTCTTTTCTCGTCCTCTTTCTGGCAACACGGATAATGATGTATCTCT
TCATGATTCTCGACATTATCCAGCTGTACGCGGAGCTTATCATGCCGATG
CCCCTGCGTTCCATCTTCCTGGGGGCGGTGGTTGTCTCCTACGGAGTAAA
TCTATACTGGGCCTCGCTGATCGTGGGCGCACTCTTCGGGAAGGAGGGCG
ATGGAAAGCCAAGGGGGGGACCGACACTAACGCTGGGTCACCCAGACACC
AAGAAGGAGAAGGACTCATGA
back to top