mRNA_P-littoralis_Contig180.72.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig180.72.2
Unique NamemRNA_P-littoralis_Contig180.72.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig180.72.2 vs. uniprot
Match: D7G2R6_ECTSI (Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R6_ECTSI)

HSP 1 Score: 452 bits (1162), Expect = 3.370e-152
Identity = 244/405 (60.25%), Postives = 289/405 (71.36%), Query Frame = 1 
Query:   64 MVLRRPACIVPVTLLALGLRPVTSRIFPRS-ALGGNFAGSLGEGRA-QYPQEETAGLSSLRERTA-LRLGEGGHSCLVPGVTCRRGAWGLAVASGLRGGATGVDDSEEKGNDILDEDEDVFEDDDGAMCEEDFGEANFFGRLQQDWRKTPVITKTFFRISIGIAFLTMVFNENHWPSFLLLDWQPAIFKLQLWRLVTPFLYFGPVGIHFLLTAHFAWTYMSQLEKLHYREPHTFVMLLAFGMSGLLLLTLVTGSDGNPSLTMGHSLSCFLVMVWSRKFAGTRINVLDMFELSTGLLPYFFVLQSLMMEGEIPWVDMMGLFIGYAWETLSIKGLIKAPKPLVNLFRNNAFMRAEYARAGKEYGQEMP-HDDXXXXXXXXXXXPDVADVTEEDEKAQVEGQKKARAA 1266
            MVLR PAC+  V LLALGL P   R+ PR  ALG +F+G    G+  Q P++E     SL++R A LRLG    S L      R+GAWGL VASGLRGGA              DED              DFGEA+F  RL+QDW+KTPVIT+ +F++S+ I       NEN WP+FLLLDW+PAIFKLQLWRL TPFL  GP+G++F LTAHFAWTYMS LEKLHYREPHTFVMLLAFGMS LLLLTLVTG D N S T+GHS++CFLVM+WSRKFAGTR+N+LDMFEL T LLPYFFV Q+LMMEG IPWVD+ G+ IGYAW+TLS+KGL+KAPKPLVNLFRNNAF+RAEYA+AGKEYGQ++P HDD      XXX    + + +E  +K +  G+    AA
Sbjct:    1 MVLRHPACLGSVVLLALGLTPTAGRVSPRLLALGSSFSGRHENGKQRQQPEQE-----SLQQRAAALRLGGDRQSFLAHSGNGRKGAWGLTVASGLRGGAD-------------DEDXXXXXXXXXXXXXXDFGEASFVDRLKQDWKKTPVITRAYFQVSVAITLAAAALNENQWPTFLLLDWRPAIFKLQLWRLFTPFLNLGPLGLNFALTAHFAWTYMSHLEKLHYREPHTFVMLLAFGMSSLLLLTLVTGGDVNSSYTLGHSMNCFLVMIWSRKFAGTRVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDVPLHDDDDDHEEXXXSDATLDEASEGSKKGEAAGRTGKGAA 387
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BLAST of mRNA_P-littoralis_Contig180.72.2 vs. uniprot
Match: A0A7S2Y3M2_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3M2_9STRA)

HSP 1 Score: 209 bits (532), Expect = 6.570e-60
Identity = 101/236 (42.80%), Postives = 156/236 (66.10%), Query Frame = 1 
Query:  448 DFGEANFFG-----RLQQDWRKTPVITKTFFRISIGIAFLTMVFNENHWPSFLLLDWQPAIFKLQLWRLVTPFLYFGPVGIHFLLTAHFAWTYMSQLEKLHYREPHTFVMLLAFGMSGLLLLTLVTGSDGNPSLTMGHSLSCFLVMVWSRKFAGTRINVLDMFELSTGLLPYFFVLQSLMMEGEIPWVDMMGLFIGYAWETLSIKGLIKAPKPLVNLFRNNAFMRAEYARAGKEYG 1140
            D  EA+F G     R++  W+KTP I+K +   S+ I      F  N WP  LL+DW   + KLQ+WRLVT FLYFG  G+ ++LT HF WTY+ QLEKLH+R+P  F ++LAFGM+ L +  L+  +  +P++ +GH+LSCFLV +W++K+ G  +NV+D+F +S  LLP+FFV Q+L++ GE+P  D++G+  G+ +  L++K +  AP+ L  +F  ++ ++  Y R  +EYG
Sbjct:  101 DIDEADFKGESILVRMKTAWKKTPPISKIYVLSSMSITIGAWAFKNNQWPQLLLMDWDKVLKKLQVWRLVTSFLYFGNFGLDYILTLHFVWTYLGQLEKLHFRKPADFFVMLAFGMTVLHISLLILKNYLSPNV-LGHNLSCFLVYIWAKKYEGNDVNVMDLFHMSAELLPWFFVAQTLVLTGELPIADIIGIAAGHMYHYLNLKKMTSAPEFLQRIFEIDS-IKMRYERYEEEYG 334
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BLAST of mRNA_P-littoralis_Contig180.72.2 vs. uniprot
Match: A0A6V1KE03_HETAK (Derlin n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KE03_HETAK)

HSP 1 Score: 197 bits (500), Expect = 3.430e-55
Identity = 106/274 (38.69%), Postives = 165/274 (60.22%), Query Frame = 1 
Query:  340 LRGGATGVDDSE---EKGNDILDEDEDVFEDDDGAMCEE----DFGEANFFGRLQQDWRKTPVITKTFFRISIGIAFLTMVFNENHWPSFLLLDWQPAIFKLQLWRLVTPFLYFGPVGIHFLLTAHFAWTYMSQLEKLHYREPHTFVMLLAFGMSGLLLLTLVTGSDGNPSLTMGHSLSCFLVMVWSRKFAGTRINVLDMFELSTGLLPYFFVLQSLMMEGEIPWVDMMGLFIGYAWETLSIKGLIKAPKPLVNLFRNNAFMRAEYARAGKEYG 1140
            +RGGA    DSE   E  +  L +DE+ F   DGA+ +E     F EA    R+   W K+  +TK F  +S+ I  +  + N+N WP+ L LDW+ A    Q WR +TPF +FGP+G++++LTA F WTYM+ LEK+  +EPH F ++   G + L+ L    G+ G     +GH+L+CFLV VWSR   G  + + D FE+   L+P+FF LQ ++MEG IP+ D++G+ IG+A+  L  K L+ AP  + ++F++   ++++Y    +E+G
Sbjct:   60 IRGGADSESDSESDFEYDDGDLSDDEEYF---DGAVGDEGNEDSFKEATLVQRIMISWNKSAPLTKAFISLSVFITVVCQITNKNQWPAALQLDWKKATAGFQFWRFLTPFFHFGPLGVNYILTAQFVWTYMNDLEKIGCKEPHDFAIMCVIGGAALIALY---GAMGWDPAGLGHNLACFLVYVWSRVHEGQSVLLFDFFEMKAVLMPWFFALQPMIMEGMIPYPDILGILIGHAYYYLKTKKLLVAPAFIKSIFQH-PILKSKYLVFEEEFG 326
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BLAST of mRNA_P-littoralis_Contig180.72.2 vs. uniprot
Match: B7G004_PHATC (Derlin n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G004_PHATC)

HSP 1 Score: 184 bits (466), Expect = 3.490e-50
Identity = 91/245 (37.14%), Postives = 147/245 (60.00%), Query Frame = 1 
Query:  424 DDGAMCEEDFGEANFFGRLQQDWRKTPVITKTFFRISIGIAFLTMVFNENHWPSFLLLDWQPAIFKLQLWRLVTPFLYFGPVGIHFLLTAHFAWTYMSQLEKLHYREPHTFVMLLAFGMSGLLLLTLVTGSDG---NPSLTMGHSLSCFLVMVWSRKFAGTRINVLDMFELSTGLLPYFFVLQSLMMEGEIPWVDMMGLFIGYAWETLSIKGLIKAPKPLVNLFRNNAFM----RAEYARAGKEY 1137
            DD  M E +F E N   R+   WRKTP +TK +   S        +FN N +P+ LLLDW+P + KLQ+WRL+T FL FGP+G+ +L+TAHF WTYM+ LE+L++  P+ F +++ FG      L++V G      +P   +GH+LS FLV +WSR   G  +N+ ++F     +LP+FF+ Q+ ++EGE+P +D +G+  G+ +      G+++AP  +V  +  ++ +    R+EY     ++
Sbjct:   99 DDFDMAESEFAEDNTVDRMIDAWRKTPPLTKGYLSASFAATLYGYLFNRNEFPTVLLLDWKPVLQKLQIWRLLTSFLNFGPLGLGYLMTAHFVWTYMATLERLNHDRPYDFWIMIFFGQ-----LSMVVGYPIFKLSPRF-LGHNLSTFLVYIWSRYHEGMEVNMFELFNTRAEMLPWFFLAQTFLLEGELPVLDFLGIVFGHIYHHCKTVGILRAPDVVVEWYNGDSSLARRIRSEYKPISSDF 337
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BLAST of mRNA_P-littoralis_Contig180.72.2 vs. uniprot
Match: A0A836CBA0_9STRA (Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA0_9STRA)

HSP 1 Score: 182 bits (461), Expect = 4.810e-50
Identity = 94/250 (37.60%), Postives = 151/250 (60.40%), Query Frame = 1 
Query:  397 DEDEDVFEDDDGAMCEEDFGEANFFGRLQQDWRKTPVITKTFFRISIGIAFLTMVFNENHWPSFLLLDWQPAIFKLQLWRLVTPFLYFGPVGIHFLLTAHFAWTYMSQLEKLHYREPHTFVMLLAFGMSGLLLLTLVTGSDGNPSLTMGHSLSCFLVMVWSRKFAGTRINVLDMFELSTGLLPYFFVLQSLMMEGEIPWVDMMGLFIGYAWETLSIKGLIKAPKPLVNLFRNNAFMRAEYARAGKEYGQE 1146
            D+++D F++D   + +EDF E     R+ Q W +TP +TK FF +S  +     VFN+N WP  L L+W   + + Q+WR+   F  FG +G++ +++ +F WTYM +LE+++++ P  F ML+ FG   LL+ T + G  G     +GHS          R++ G  +NV DMF L   LLP+FFV Q+L++EGE+P +D++G+F+GY +  L I+ LIKAP+ +   F+  A  + +Y R  +E+G E
Sbjct:   24 DDEDDEFDED---IADEDFEEGAVGNRIGQLWARTPYLTKRFFYVSFALTAYAFVFNKNAWPKLLDLEWDKVL-RGQIWRVAATFFCFGALGMNCIISMYFVWTYMGELERMYFKRPQDFAMLMGFGALCLLVFTSLMGIHGQ---FLGHS----------REYEGVEVNVNDMFSLKAELLPWFFVAQTLVLEGEVPLLDLLGIFVGYLYMQLKIRKLIKAPEFVTQFFKLPAIAK-DYKRFEREFGVE 255
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BLAST of mRNA_P-littoralis_Contig180.72.2 vs. uniprot
Match: A0A1Z5JIU9_FISSO (Derlin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIU9_FISSO)

HSP 1 Score: 177 bits (449), Expect = 9.140e-48
Identity = 85/230 (36.96%), Postives = 135/230 (58.70%), Query Frame = 1 
Query:  424 DDGAMCEEDFGEANFFGRLQQDWRKTPVITKTFFRISIGIAFLTMVFNENHWPSFLLLDWQPAIFKLQLWRLVTPFLYFGPVGIHFLLTAHFAWTYMSQLEKLHYREPHTFVMLLAFGMSGLLLLTLVTGSDGNPSLTM-----GHSLSCFLVMVWSRKFAGTRINVLDMFELSTGLLPYFFVLQSLMMEGEIPWVDMMGLFIGYAWETLSIKGLIKAPKPLVNLFRNNA 1098
            DD  + E DF EAN   R+ + W++TP +TK +   S G      +FN+N +P  L L+W+P + +LQ+WR  T FL FGP G+ ++LTA F WTYM+ LE+L++  P  F +L+ FG   +++        G P L +     GH+LS +LV +WSR   G  +N+ +MF     LLP+FF+ Q+ ++EGE P +D +G+  G+ +      G+++AP  LV  +  ++
Sbjct:   93 DDFEVAEADFAEANTLDRVLEAWKRTPPLTKAYLTASFGATMYGYLFNKNEFPRILTLEWKPVLQRLQIWRPFTSFLNFGPFGLGYILTAQFVWTYMATLERLNHNRPFDFWILMLFGQLSMVI--------GYPLLKLSPRFLGHNLSTYLVYIWSRYHEGVEVNMFEMFNTKAELLPWFFLAQTFLLEGEPPVLDFLGIVFGHIYHHCKTVGILRAPDALVAWYHGDS 314
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BLAST of mRNA_P-littoralis_Contig180.72.2 vs. uniprot
Match: A0A7S1ZWZ3_TRICV (Derlin n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZWZ3_TRICV)

HSP 1 Score: 175 bits (444), Expect = 1.010e-46
Identity = 86/231 (37.23%), Postives = 136/231 (58.87%), Query Frame = 1 
Query:  427 DGAMCEEDFGEANFFGRLQQDWRKTPVITKTFFRISIGIAFLTMVFNENHWPSFLLLDWQPAIFKLQLWRLVTPFLYFGPVGIHFLLTAHFAWTYMSQLEKLHYREPHTFVMLLAFGMSGLLLLTLVTGS---DGNPSLTMGHSLSCFLVMVWSRKFAGTRINVLDMFELSTGLLPYFFVLQSLMMEGEIPWVDMMGLFIGYAWETLSIKGLIKAPKPLVNLFRNNAFMRA 1110
            D  + E+DFGE     R    W KTP  TK +   S+       + N+N +P  LLLDW+P + ++QLWR +T FL  GP G+ + +T HF WTYMS LE+L++  P+ F +++ FG      +T+V G    + +P   +GH+LS FLV VWSR   G  +N+ ++F      LP+FF+ Q+ ++EGE+P +D++G+F G+ +      G+I+AP+ LV  +  +   +A
Sbjct:  124 DDVIGEDDFGEDGTLERASAAWAKTPPFTKMYLSASVAATLWGYLLNKNEFPGVLLLDWKPILTRMQLWRPLTAFLNVGPFGLGYAMTGHFVWTYMSTLERLNHDRPYDFWIMILFGC-----VTMVAGYTFLNISPRF-LGHNLSTFLVYVWSRYHEGMEVNMFELFVTRAETLPWFFLAQTFLLEGELPVLDLLGIFFGHIYHHCKTSGIIRAPRALVEWYEKSESSKA 348
[Close]
BLAST of mRNA_P-littoralis_Contig180.72.2 vs. uniprot
Match: A0A7R9VZL8_9STRA (Derlin n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZL8_9STRA)

HSP 1 Score: 173 bits (438), Expect = 4.210e-46
Identity = 80/221 (36.20%), Postives = 135/221 (61.09%), Query Frame = 1 
Query:  436 MCEEDFGEANFFGRLQQDWRKTPVITKTFFRISIGIAFLTMVFNENHWPSFLLLDWQPAIFKLQLWRLVTPFLYFGPVGIHFLLTAHFAWTYMSQLEKLHYREPHTFVMLLAFGMSGLLLLTLVTGSDGNPSLTMGHSLSCFLVMVWSRKFAGTRINVLDMFELSTGLLPYFFVLQSLMMEGEIPWVDMMGLFIGYAWETLSIKGLIKAPKPLVNLFRNNA 1098
            M E+DFGE     R    W+KTP  TK +   S+    +  V N+N +P F LL+W+P + +LQ+WR  T FL FGP G+ +L+T HF WTYM+ LE+L++  P+ F +++ FG + +++    T  + +P   +GH+LS FLV VWSR   G  +N+ ++F     LLP+FF+ Q+ ++EGE+P +D++G+  G+ +       +I+ P+ + + +  ++
Sbjct:  103 MAEDDFGEDGTVERTIAAWKKTPPFTKAYLTASMAATGVGYVMNKNQFPEFFLLEWKPILTRLQIWRPFTAFLNFGPFGLGYLMTGHFVWTYMATLERLNHDRPYDFWLMIVFGCASMVVG--YTFLNISPRF-LGHNLSTFLVYVWSRYHEGMEVNLFELFNTRAELLPWFFLAQTFLLEGEVPILDLLGILFGHIYHHCKTTNIIRTPRFVTDWYNGDS 320
[Close]
BLAST of mRNA_P-littoralis_Contig180.72.2 vs. uniprot
Match: A0A7S3QJ48_9STRA (Derlin n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJ48_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.330e-44
Identity = 99/273 (36.26%), Postives = 163/273 (59.71%), Query Frame = 1 
Query:  340 LRGGATGVDDSEEKGNDILDEDEDVFEDDDGAMCEEDFGEANFFGRLQQDWRKTPVITKTFFRISIGIAFLTMVFNENHWPSFLLLDWQPAIFKLQLWRLVTPFLYFGPVGIHFLLTAHFAWTYMSQLEKLHYREPHTFVMLLAFGMSGLLLLTLVTGSDGNPSLTMGHSLSCFLVMVWSRKFAGTRINVLDMFELSTGLLPYFFVLQSLMMEGEIPWVDMMGLFIGYAWETL-SIKGLIKAPKPLVNLFRN------NAFMRAEYARAGKEY 1137
            +RGG+    DS+    D  D+D   F+D D    E+DF E +      Q ++K+P +TK +   S   + +  + N+N +PS+ LLDW+P I K Q+WR +T F  FGP+G+ +L+TAHF WTYMS LE+L++ +P+ F  ++ FG + +++    T  + +P   +GH+LS FLV VWSR   G  +N+ +MF+    +LP+FF+ Q+ ++EGE P +D++G+  G+ +  L SI G+ + P  +   + N      NA +RAEY +   ++
Sbjct:   78 IRGGSDSEYDSD---FDFSDDDMFGFDDLDADNLEDDFSEQSTLSLAYQAFQKSPPLTKIYLTASFLCSSVGYLQNKNEFPSYFLLDWKP-ILKGQIWRPITAFFNFGPIGLGWLMTAHFVWTYMSTLERLNHSKPYEFWYMIFFGCTSMVMG--YTFLNISPRF-LGHNLSTFLVYVWSRYHEGLEVNMFEMFQTRAEMLPWFFLAQTFLLEGEFPILDLLGIAFGHVYHYLASIGGIGRCPNFIKEWYENGDDSVVNA-IRAEYKKISSDF 342
[Close]
BLAST of mRNA_P-littoralis_Contig180.72.2 vs. uniprot
Match: A0A7S1ZIK9_9STRA (Derlin n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIK9_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.070e-43
Identity = 90/277 (32.49%), Postives = 155/277 (55.96%), Query Frame = 1 
Query:  340 LRGGAT-GVDDSEEKGNDILDEDEDVF----EDDDGAMCEEDFGEANFFGRLQQDWRKTPVITKTFFRISIGIAFLTMVFNENHWPSFLLLDWQPAIFKLQLWRLVTPFLYFGPVGIHFLLTAHFAWTYMSQLEKLHYREPHTFVMLLAFGMSGLLLLTLVTGSD--GNPSLTMGHSLSCFLVMVWSRKFAGTRINVLDMFELSTGLLPYFFVLQSLMMEGEIPWVDMMGLFIGYAWETLSIKGLIKAPKPLVNLFRNNAF----MRAEYARAGKEY 1137
            +RGGA    DDSE   +    +D+D F    E+D     E+DF E     R  + + KTP  TK +   S     +  + ++N +P  L L+W+P + +LQLWR +T FL FGP+G+ +++T HF WTYM+ LE+L++  P+ F +++ FG + +     V G    G     +GH+LS FLV VWSR   G  +N+ ++F     +LP+FF+ Q+ ++EGE+P +D++G+  G+ +       +++ P  L+N + ++      +R +Y +   ++
Sbjct:   48 IRGGAILDSDDSEYDFDSDFSDDDDAFFDLNEEDFEISAEDDFNEDTSLSRFMEAFAKTPPFTKAYMTASFIATSVGYLTSKNDFPPLLQLNWKPTLTRLQLWRPITAFLNFGPLGLGYIMTCHFVWTYMATLERLNHAAPYDFWVMILFGCASM-----VAGYSCLGLSPRFLGHNLSTFLVYVWSRYHEGMEVNMFELFNTRAEMLPWFFLAQTFLLEGELPVLDLLGIVFGHIYHHYKTTHVLRTPTFLINWYNSDGVYSTAVREKYKKISSDF 319
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig180.72.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2R6_ECTSI3.370e-15260.25Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R6_... [more]
A0A7S2Y3M2_9STRA6.570e-6042.80Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 Rep... [more]
A0A6V1KE03_HETAK3.430e-5538.69Derlin n=1 Tax=Heterosigma akashiwo TaxID=2829 Rep... [more]
B7G004_PHATC3.490e-5037.14Derlin n=2 Tax=Phaeodactylum tricornutum TaxID=285... [more]
A0A836CBA0_9STRA4.810e-5037.60Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A1Z5JIU9_FISSO9.140e-4836.96Derlin n=2 Tax=Fistulifera solaris TaxID=1519565 R... [more]
A0A7S1ZWZ3_TRICV1.010e-4637.23Derlin n=1 Tax=Trieres chinensis TaxID=1514140 Rep... [more]
A0A7R9VZL8_9STRA4.210e-4636.20Derlin n=1 Tax=Pseudictyota dubia TaxID=2749911 Re... [more]
A0A7S3QJ48_9STRA1.330e-4436.26Derlin n=1 Tax=Chaetoceros debilis TaxID=122233 Re... [more]
A0A7S1ZIK9_9STRA1.070e-4332.49Derlin n=3 Tax=Ditylum brightwellii TaxID=49249 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig180contigP-littoralis_Contig180:255713..261656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G2R6
PFAMsDER1
Model size1474
Max annot lvl2759|Eukaryota
KEGG koko:K13989
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
Exons6
Evalue5.52e-153
EggNOG OGsCOG5291@1|root,KOG0858@2759|Eukaryota
Descriptionubiquitin-dependent ERAD pathway
Cds size1470
COG categoryI
BRITEko00000,ko00001,ko00002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig180.72.2prot_P-littoralis_Contig180.72.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig180 255713..261654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789871.5316305-CDS-P-littoralis_Contig180:255712..2560421680789871.5316305-CDS-P-littoralis_Contig180:255712..256042Pylaiella littoralis U1_48CDSP-littoralis_Contig180 255713..256042 +
1680789871.5441868-CDS-P-littoralis_Contig180:257415..2576131680789871.5441868-CDS-P-littoralis_Contig180:257415..257613Pylaiella littoralis U1_48CDSP-littoralis_Contig180 257416..257613 +
1680789871.5535524-CDS-P-littoralis_Contig180:259534..2597911680789871.5535524-CDS-P-littoralis_Contig180:259534..259791Pylaiella littoralis U1_48CDSP-littoralis_Contig180 259535..259791 +
1680789871.5625918-CDS-P-littoralis_Contig180:260310..2604251680789871.5625918-CDS-P-littoralis_Contig180:260310..260425Pylaiella littoralis U1_48CDSP-littoralis_Contig180 260311..260425 +
1680789871.5718548-CDS-P-littoralis_Contig180:260877..2610091680789871.5718548-CDS-P-littoralis_Contig180:260877..261009Pylaiella littoralis U1_48CDSP-littoralis_Contig180 260878..261009 +
1680789871.5809002-CDS-P-littoralis_Contig180:261216..2616541680789871.5809002-CDS-P-littoralis_Contig180:261216..261654Pylaiella littoralis U1_48CDSP-littoralis_Contig180 261217..261654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig180.72.2

>prot_P-littoralis_Contig180.72.2 ID=prot_P-littoralis_Contig180.72.2|Name=mRNA_P-littoralis_Contig180.72.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=490bp
NCETIPALRTPAGSCASLGCTMVLRRPACIVPVTLLALGLRPVTSRIFPR
SALGGNFAGSLGEGRAQYPQEETAGLSSLRERTALRLGEGGHSCLVPGVT
CRRGAWGLAVASGLRGGATGVDDSEEKGNDILDEDEDVFEDDDGAMCEED
FGEANFFGRLQQDWRKTPVITKTFFRISIGIAFLTMVFNENHWPSFLLLD
WQPAIFKLQLWRLVTPFLYFGPVGIHFLLTAHFAWTYMSQLEKLHYREPH
TFVMLLAFGMSGLLLLTLVTGSDGNPSLTMGHSLSCFLVMVWSRKFAGTR
INVLDMFELSTGLLPYFFVLQSLMMEGEIPWVDMMGLFIGYAWETLSIKG
LIKAPKPLVNLFRNNAFMRAEYARAGKEYGQEMPHDDDDDDVVAVPTTPD
VADVTEEDEKAQVEGQKKARAAATEGEVTSGGLVSSGAARGAAKAEEEIG
GKKEGAESVSCAEEEEEEEEEEEEEEEDTSQEATARESDQ
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mRNA from alignment at P-littoralis_Contig180:255713..261656+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig180.72.2 ID=mRNA_P-littoralis_Contig180.72.2|Name=mRNA_P-littoralis_Contig180.72.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5944bp|location=Sequence derived from alignment at P-littoralis_Contig180:255713..261656+ (Pylaiella littoralis U1_48)
AACTGTGAAACCATCCCTGCGCTCCGTACACCCGCTGGTTCCTGCGCTTC
GCTAGGTTGCACAATGGTGCTTCGACGTCCGGCATGTATCGTTCCCGTGA
CGTTGCTAGCATTAGGGCTGAGGCCGGTGACGAGTCGTATTTTCCCGCGC
AGTGCGCTTGGGGGTAACTTCGCGGGTAGTCTTGGGGAAGGACGGGCGCA
GTACCCGCAGGAGGAGACAGCAGGCTTATCAAGTCTACGGGAGCGCACGG
CGCTGCGGCTAGGAGAAGGTGGACATTCTTGCTTGGTGCCTGGAGTTACC
TGTCGGAGAGGGGCATGGGGATTGGCCGTGGTACGTACAGACAGCAGGAG
TTGTAGGAAACAAATTTGCTACTTTGCAGTTTGTTGTTGTTCGTCGATAC
CTGAGTTGAACAACACCGCTTTCTCATTTGGACGGTCGCCGACGATGCGT
GAACCTCAATCGCAGATAACGGAGAGTCAAAGCCGGGCGTGAGTATACCT
TATGACTTTTATCCCACAGCGGCAATAAACTACGGCCTGAATCTAGTAGT
GTTTGATTAATCAGGAGCAGGATCCTTGGTCGGACATTGGTACCCAGCGG
CACCAATGGCAATCCTTGTTTTTACACGTGCTTGACTGCTGCTCCTGTAC
AGCAGTACAGCCGTATTCCGTTACGCCCCCCCACGTGAATCACCCCTGAT
TCGTGGGGCTTTTCCATAGAAATGGCTGCAAATACTCCAAGTACATTACC
TCGTGCTTGCTGCCCCGTCGTGGCTGTAGTCCTCGTGGGTGAGTAATCTA
TCATCGCCCTATTTTTGCCACCGACCATCCTTGCCGTATATACGAGTACA
AACATGCAAACGATATCTTCACGTGTCGCGTTCTATCATGACTTGAATTC
CGCCCTAATCTTGCCCGTTCACGGTACTCCAAGTGTATGATAGCACGGGG
GTGCAAATGTTTTTGCTGGCTTGATATCCCGACGGCGAGGGTGGTGTCTG
AAGCGAAACGAGCGATTTCCGGAAAAAATCCCTGACAAGATCTTCACTAT
GACATCCTCTCCAACATTGGGCATCCTTCGGTGTCGAGATACCAGGCAGA
TAAAACGATTGCCTTCTGTACGGTACAAAGCAGCACAGCAGCGGGTAGAT
TTGCGGTTAGATTTTTGGTGCATGCCCTTTGTGTGCTCCCTGCGCACGAG
AGACGTGAGCCCGCTTCGTTACGAGGTCCGTCAGCAACGGTATGGTGGAC
TACTTGAGTGCTGCGGTTCAGTATGGTGAAGCAATAGCCTGTCATCGCTG
CTGTCTATTTTCTGCGCGACGGCTACTGCTGTCCCGTCATAATTGCGCCC
TTGCAACAGCCCAGCGGCAAAGAGAAATGATCGCCGGCCTTGTACAGCAG
CAAGTAGTGCTGCTGCGAGCGATTTACCGCGGTGCATACTGCTGTATACG
TCGAACTACTCCGTATGAGTCTGAAAGAGTGTGTCAAGCGAAAGCTTTCC
GCGCAGAAGTAATCGTTACTTGAAGTGACGTATCGTACTCGACACTCCTG
CCAAGCAAACCGAGGGCCCTGTAATCGAACCAGAAGTGGCATTTCCCTCA
ACCGAAAATCTAAGCCTTGGGAGTGCTACCAGTACGACTTTAGCTCCCAC
TCCACAGATGAAGGTGCCTCATTTATCCCGACCACCGTACTGCTTCGGAA
CAGGCGAGTGGGCTTCGAGGCGGGGCAACGGGGGTTGACGATTCCGAGGA
AAAAGGCAACGATATTCTGGATGAAGACGAAGACGTTTTTGAAGATGACG
ACGGCGCAATGTGCGAGGAAGATTTCGGGGAGGCCAATTTCTTCGGCCGG
CTGCAGCAGGACTGGCGAAAGACCCCCGTCATCACCAAAACGTTTTTCCG
GGTACGATAAACAACAGCAGTAGAATAAAAGTGGGTACGTACCGTTCTTT
GAAGAAACTTCCCGCAATACGTACGCCAGCCAACAGAGATGATACGGCAG
TACACCTTTTTTTGAGGACCCGTGTTGAAATCCCCAGGGCGGTATTTTTT
TCATCAACTCCAAAAACAAGGGAGCGAGTCCTCCGAAAAAGCAAACGCAT
TACAGGAACGCATTGAGTACCTCTGTCGTTGTCCTCTCACGAACTAAACA
AGTTCAACCCAAGAGAATCGATCTAGTCGTCTTGAAGCTTCATGTTCATT
CGAATTACAAGCGTACCGCACGGATCAAGAGTGCAAGTTTGAGTAACCCC
CGGGTAGCGGTCTCATATAAAAACACTGCTGTATCTCGCGGTATATGTTC
TCCAAGCTTCAAGGCCCGGTAGGTTCGATGCCATTGATGCGCAAATGTGC
AAGGCAACGAGCAGGACTGAATCGCGCCATTCCAGGTCCTTCGTAAAGGA
GATCGATTGTTGTTGAAGCAGCACTTTAGTGTACAGTTCTTTCAGACAAG
TTTTGTTGGCGACCGAAAATATGCGGAGTCCTGTAGTTAAGGCGGTACCT
TGTAAGGTTGATTTTCCCGATCAAAATCACTCATTTCCGACCCAGAGCAA
AATAACGCGTTTACGGTGGCGAACATGACCCATTTTCTGTCTGAGATTTC
CCGCAACAAATTTTTCCTGCCGTCAATCTGAGGGATTTCCAACGCGATCA
ACCGATCGATTTCTGCGATCGGAAATACTTTAGTTGGGTCTGCTCTCTCA
ATTTGGCATGATACGTGACGTTTGGTACTTGCCAGCATCATTACGCACAC
AGATGCACACATACCAAAAGCCACAAGGAACCACCGAGAAAGCAGAGCAA
CAGCAAAGGAGGAGAGCTGCTGCTGCTGCTACTGTCGCTGCTGCTGCTGC
TGCTGTCGATGCACGTGCCGAGTCTTACAGGTGTCTTGACTGTGTATCTG
TGTGCCGGCACATCACACGGCTCCGCGCAACAAGTATTTTCCTGTTGCCA
CCGGTTTGCTATTTCGCCCATCACTGTCATACGAACTCAGCCACAACAAC
GACAAAGAAGGCATCTGCGTGAGCTGCGTGTATCTGTCCTTCTCGTGTGA
TGATCGTTTGGGCCCGCGAGGTATCGGCAGGCTCGCAAAGAAGTTGATGA
AATCATATGTTGTAGACAATCACCAGAGAGAGAAGACAGAGAGAGCTGTA
CAGCAGCACCGACCGGCAGGTCTTTTTTGATTTTTTCACACGTGCTCTGA
GATAAGCAAACTGCCTTGTACGGACGTACCGATGTAACCCTGTCCCAAAT
GGTCACTACACGACAAGTTCCATGCACACAGCTCACGACAGACATCTTCC
TCATTGCTGTGGCTGTATCCGTTCGAGAGTGGTGGACGAGACAGCAAACC
GGTGCCACGCGAAAAAGACCTGCTGGGCGGAGCAGCGGCAGCTCTTTTTT
GTCTCTTTTTTCTGCGTGTGTTTGACACATATCACCATCATCAAGTGACT
ATGTTGCGACCTACCTATGCCTAGAGGGCTCAAGCGATCAGCACATGAGA
AGGGCTACATACACAGCTCACACGGGACGGCTTTGTCATTGCTGTGGCCT
CATTCGTTGGAGAGGCCAACAAGCGAAAGTACAAATCGGTCTCAGGGCAA
AAAAAAGGCCCATTGCAGCTGCTGCTTGCTGCGTTGCAGTCTTGAAAACA
AAATCATAAAAAAAACAACCACCGTACAAGAACAGCGGATCGGAAAAATC
AACCTGTTAAGAAACCACCGATGTAACCCCCCAAATTGTGTCAAGTACGT
CCGTTTTAGAACGACCCATGTTAATGGACGCCTGCCTGCCACGACCACAC
CCGCCCCCCGTCCTTTTTTCAGATTAGCATTGGCATCGCCTTTTTGACGA
TGGTCTTCAACGAGAACCATTGGCCGAGTTTTTTGCTCCTGGACTGGCAG
CCGGCCATCTTCAAGCTGCAGCTGTGGCGTCTCGTGACACCGTTCTTGTA
TTTCGGGCCGGTTGGGATTCACTTCCTCCTGACGGCCCACTTCGCTTGGA
CGTACATGAGCCAGCTGGAAAAGCTGCACTACCGGGAGCCACACACCTTC
GTGATGCTCCTCGCCTTCGGCATGAGCGGGTGAGTGTTTGTATTGTATGT
TTTTGTCTGTAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCG
GTGTTAACGACAATATGCTGCTGTTCAATCTTCCGCGGCGCTTCGTTCTT
GACTCTGGCAGCAAGCAGCACGTTCCGTCCATGCCCAGACGACGCCAGAA
GCAGAGCCGTCGCCACGCATGGTAGAAACTTTAGACTTGTGATGGGGAGC
GCTTTGATCTCTTCGCGTATCAAAGCAAAGTGCGCTTCACATATCGGTAC
CGTTTGCGTGCATCATTCACGACCCCACCTCGTGTACGATGATTGTAGGT
GAAAAGCTCGGCCTCATCGTTGACCTTGCACCGTTGGTCATCACGTGGGG
TTCCCTTTGTGTGTGTGTGTGGGGTCCCATCTCTCGTGTTACTCTGTAGG
TGAGGTTGTCGCGCCAGTTTCTTCGCGGAGTATTTGCGTCTTCCTTACGC
CCCAAGCATCTATCTGCCGCCCGATTGCTCCTCTGACGCAAATCACAGTC
TTCTTTTGCTAACGTTGGTGACGGGCTCTGACGGGAATCCCAGCCTCACC
ATGGGCCACAGCCTCAGCTGCTTCCTGGTGATGGTCTGGAGTCGCAAGTT
TGCAGGCACCAGGGTGAGGGTAGACGATGTTGCAGGTCCTTATGGCGTTG
TCGGGTGTCCAGGACTTGACTCAATTGTAAGGCACAATCGGTTTTGGGGA
TAATGTTGTCAAACCTCGCGGGAGTAAGATAGTAGCAGGCTCGTTTGCAA
ATCTTTGGCGGGCAAAAACCAGCCTATGGTCCCCCCTTTCCTACAAGTAC
CTTTGTCCGATGCAAAGGTCCAAGCCGCCATCCCGCTCGTACTGAAAAAG
TTGAGTAGTTCTTCACGAGGTTGCTCAGTACGGCAGCGCTAGTATGATTC
CCCGGTCTGCAAATTCCGATGCGAGTGTATACGCTGGTAAGTGTCATGTG
GCCCTCAAAATTCAATCCAACAAGCCCCGTCGAAGCATTCAAAGTACAAG
CCGACGTACCGACCCTTTTCATACTGCTATCCGAAACGTTTGCTTCCACC
TTGCCACCAAACCAGATCAATGTGCTGGACATGTTCGAGCTTTCGACCGG
GTTGCTCCCATACTTCTTCGTGTTGCAGTCGCTCATGATGGAAGGCGAGA
TTCCGTGGGTGGACATGATGGGGCTTTTCATTGGCTACGCTTGGGAGGTG
CGTGTTTTCGTGGGTCTGTTTGTCTGTATGTCTGTGGATCGGTTTACTGG
GCGTTGCAAATGCGAAGAAGTTGTTTTCGGGAATCCAAAGTGCCGCCATT
GTTAAACAAGTTAATATTCGTGAATGGTTCACCCCTCTCATCGCCGTCCC
CCATCATATACAACGGACGCGGCTGCCTGCATGTCGTTTTTCCTCCCCCA
CAAGACTCTTTCCATAAAAGGCCTCATCAAGGCCCCCAAGCCCCTGGTGA
ACCTCTTCCGGAATAACGCCTTCATGAGGGCGGAGTACGCGAGAGCCGGA
AAGGAATATGGTCAGGAAATGCCGCACGATGACGATGACGACGACGTAGT
AGCAGTGCCAACAACACCAGATGTTGCGGACGTGACCGAGGAGGACGAGA
AGGCGCAGGTTGAAGGGCAAAAGAAAGCGCGTGCGGCGGCAACAGAGGGA
GAAGTCACGAGCGGCGGCCTAGTATCATCGGGTGCGGCGAGAGGAGCGGC
CAAGGCGGAGGAGGAGATTGGGGGCAAGAAGGAGGGCGCGGAATCGGTAT
CCTGTGCCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAA
GAGGACACTAGTCAAGAAGCGACAGCACGAGAAAGCGATCAAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig180:255713..261656+

>mRNA_P-littoralis_Contig180.72.2 ID=mRNA_P-littoralis_Contig180.72.2|Name=mRNA_P-littoralis_Contig180.72.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1470bp|location=Sequence derived from alignment at P-littoralis_Contig180:255713..261656+ (Pylaiella littoralis U1_48)
AACTGTGAAACCATCCCTGCGCTCCGTACACCCGCTGGTTCCTGCGCTTC
GCTAGGTTGCACAATGGTGCTTCGACGTCCGGCATGTATCGTTCCCGTGA
CGTTGCTAGCATTAGGGCTGAGGCCGGTGACGAGTCGTATTTTCCCGCGC
AGTGCGCTTGGGGGTAACTTCGCGGGTAGTCTTGGGGAAGGACGGGCGCA
GTACCCGCAGGAGGAGACAGCAGGCTTATCAAGTCTACGGGAGCGCACGG
CGCTGCGGCTAGGAGAAGGTGGACATTCTTGCTTGGTGCCTGGAGTTACC
TGTCGGAGAGGGGCATGGGGATTGGCCGTGGCGAGTGGGCTTCGAGGCGG
GGCAACGGGGGTTGACGATTCCGAGGAAAAAGGCAACGATATTCTGGATG
AAGACGAAGACGTTTTTGAAGATGACGACGGCGCAATGTGCGAGGAAGAT
TTCGGGGAGGCCAATTTCTTCGGCCGGCTGCAGCAGGACTGGCGAAAGAC
CCCCGTCATCACCAAAACGTTTTTCCGGATTAGCATTGGCATCGCCTTTT
TGACGATGGTCTTCAACGAGAACCATTGGCCGAGTTTTTTGCTCCTGGAC
TGGCAGCCGGCCATCTTCAAGCTGCAGCTGTGGCGTCTCGTGACACCGTT
CTTGTATTTCGGGCCGGTTGGGATTCACTTCCTCCTGACGGCCCACTTCG
CTTGGACGTACATGAGCCAGCTGGAAAAGCTGCACTACCGGGAGCCACAC
ACCTTCGTGATGCTCCTCGCCTTCGGCATGAGCGGTCTTCTTTTGCTAAC
GTTGGTGACGGGCTCTGACGGGAATCCCAGCCTCACCATGGGCCACAGCC
TCAGCTGCTTCCTGGTGATGGTCTGGAGTCGCAAGTTTGCAGGCACCAGG
ATCAATGTGCTGGACATGTTCGAGCTTTCGACCGGGTTGCTCCCATACTT
CTTCGTGTTGCAGTCGCTCATGATGGAAGGCGAGATTCCGTGGGTGGACA
TGATGGGGCTTTTCATTGGCTACGCTTGGGAGACTCTTTCCATAAAAGGC
CTCATCAAGGCCCCCAAGCCCCTGGTGAACCTCTTCCGGAATAACGCCTT
CATGAGGGCGGAGTACGCGAGAGCCGGAAAGGAATATGGTCAGGAAATGC
CGCACGATGACGATGACGACGACGTAGTAGCAGTGCCAACAACACCAGAT
GTTGCGGACGTGACCGAGGAGGACGAGAAGGCGCAGGTTGAAGGGCAAAA
GAAAGCGCGTGCGGCGGCAACAGAGGGAGAAGTCACGAGCGGCGGCCTAG
TATCATCGGGTGCGGCGAGAGGAGCGGCCAAGGCGGAGGAGGAGATTGGG
GGCAAGAAGGAGGGCGCGGAATCGGTATCCTGTGCCGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAAGAGGAGGAAGAGGACACTAGTCAAGAAGCGA
CAGCACGAGAAAGCGATCAA
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