mRNA_P-littoralis_Contig180.51.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig180.51.1
Unique Name	mRNA_P-littoralis_Contig180.51.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig180.51.1 vs. uniprot
Match: A0A6H5JUA8_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA8_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.390e-11
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 2

Query:  263 IAGMEVVKEVENVPTTADKPNDDVVIVDCGELAEDGDDVTPAPTDEAPADGGSMEAEKPETD 448
            ++GMEVVKE+ENV TTADKPNDDVVIVDCGEL E+      AP DEAPA   +M+AE PET+
Sbjct:  406 LSGMEVVKEIENVATTADKPNDDVVIVDCGELVEE-----EAPADEAPAYDEAMKAETPETE 462

[Close]

BLAST of mRNA_P-littoralis_Contig180.51.1 vs. uniprot
Match: D8LKW9_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW9_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.170e-10
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 2

Query:  263 IAGMEVVKEVENVPTTADKPNDDVVIVDCGELAEDGDDVTPAPTDEAPADGGSMEAEKPETD 448
            ++GMEVVKE+ENV TTADKPNDDVVIVDCGEL ++      +P DEAPA   +M+AE PET+
Sbjct:  450 LSGMEVVKEIENVATTADKPNDDVVIVDCGELLQE-----ESPADEAPAYDEAMKAETPETE 506

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig180.51.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig180.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JUA8_9PHAE	1.390e-11	67.74	Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CC...	[more]
D8LKW9_ECTSI	1.170e-10	64.52	Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig180	contig	P-littoralis_Contig180:156071..157921 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	2880.D8LKW9
PFAMs	FKBP_C,Pro_isomerase,TPR_2,TPR_8
Model size	1851
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01802,ko:K09568
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006974,GO:0008143,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0012505,GO:0016018,GO:0016070,GO:0016071,GO:0016192,GO:0016604,GO:0016607,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019222,GO:0019538,GO:0030141,GO:0031323,GO:0031326,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0033218,GO:0033554,GO:0034641,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045055,GO:0045069,GO:0045070,GO:0045321,GO:0046483,GO:0046903,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051716,GO:0060205,GO:0060255,GO:0065007,GO:0070013,GO:0070717,GO:0071007,GO:0071013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097708,GO:0099503,GO:0101002,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1903506,GO:1903900,GO:1903902,GO:1904813,GO:1990904,GO:2000112,GO:2001141
Exons	1
Evalue	4.14e-13
EggNOG OGs	COG0545@1\|root,COG0652@1\|root,KOG0543@2759\|Eukaryota,KOG0865@2759\|Eukaryota
EC	5.2.1.8
Description	peptidyl-prolyl cis-trans isomerase activity
Cds size	180
COG category	O
BRITE	ko00000,ko01000,ko03110

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789870.2984426-UTR-P-littoralis_Contig180:156070..156341	1680789870.2984426-UTR-P-littoralis_Contig180:156070..156341	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig180 156071..156341 +
1680789870.3194087-UTR-P-littoralis_Contig180:156521..157921	1680789870.3194087-UTR-P-littoralis_Contig180:156521..157921	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig180 156522..157921 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789870.308693-CDS-P-littoralis_Contig180:156341..156521	1680789870.308693-CDS-P-littoralis_Contig180:156341..156521	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig180 156342..156521 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig180.51.1	prot_P-littoralis_Contig180.51.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig180 156342..156521 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig180:156071..157921+
coding sequence from alignment at P-littoralis_Contig180:156071..157921+

protein sequence of mRNA_P-littoralis_Contig180.51.1

>prot_P-littoralis_Contig180.51.1 ID=prot_P-littoralis_Contig180.51.1|Name=mRNA_P-littoralis_Contig180.51.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=60bp
MEVVKEVENVPTTADKPNDDVVIVDCGELAEDGDDVTPAPTDEAPADGGS
MEAEKPETD*

mRNA from alignment at P-littoralis_Contig180:156071..157921+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig180.51.1 ID=mRNA_P-littoralis_Contig180.51.1|Name=mRNA_P-littoralis_Contig180.51.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1851bp|location=Sequence derived from alignment at P-littoralis_Contig180:156071..157921+ (Pylaiella littoralis U1_48)
CTCCAGGCGGGAGAGGACATCGGCAATACTGCTTTAGGTTTGATACGTAC
GAAGTGAGATCGTTTCTTGTACTGTGCCAGTGTGTGGAACGTTCGCAACC
CGCTCAACAACCCCATTCCGCCGCTGTGTCTCGACCTCGTAACATTTTAA
AGACTATCACCAATACTGACGGGTACATCTGGCGAACTTTTCTAGAGCAT
CCGCGCACGTTCAAAACCCCTCCTCCCCCATAATTCACCTTTATTTTACA
TAAACTCGACGGATCGCAGGCATGGAGGTCGTGAAGGAAGTCGAAAATGT
ACCGACCACAGCCGACAAGCCAAACGACGACGTCGTCATCGTAGATTGCG
GAGAACTCGCCGAGGACGGGGATGATGTTACCCCGGCACCGACAGACGAG
GCGCCTGCCGACGGGGGCTCCATGGAGGCGGAAAAGCCCGAAACGGATTA
GACGATCATCCTTAACGACAGAAGATACCTCCCGATGGCACGGTTTTTTG
CTGCCTGGTTGATATTTTTTTGTTCATGGCGAACAGATGCCGGCAGTTCC
TGAATGATTTGTGCTACCCAGGTGCCTCGCACGGTCCCTGTGCTGCAATA
CTTTTTACTTGCACTCATCGGTCGAAACGTGCCGAATATGAATCTTTCGG
CGTTGGCAGCCGCCCTGCCGTGGAACAAACAGTCGGCCAGGAAATCGCTC
TGGGGTGGGCGTTGGTTGGTATCACCACATCGGAAACATTACTCAGTCGT
TGATACAATGACACGGAGAGGAAGCAGGTGAAGATGGCAGATTGCGCTTC
CCTTTGATAAGTTTGCATTCCGGTCTCTAGACGAAGCATTTGCATTTAGT
GCGGGAGCTAGTCGGGTGGACAAGGATGGTGGCTTCTCAAGTTCCGCCTT
ATTTTTGTCTGGGAGCACCGCTTCGGTGTATTAATATAAATAGTACCAAG
TAGGCTTCAGGCGCATTTTTTACCGGGCATACCTATCCTGTCTGTCCAGA
ATAACTGTAATGTCTCGCATCCCAGCTACGGTATGCCGTCGTAGATATCT
CTGGATGTTTGCGAACGGGCTTTCTCCTCTTGTTCTTTGTGTGGGCAGGG
GGAGGGGAGGCGTATTCGCTTACTGCGTGCTGCTTGCCTTTGCTTATCTT
TTTCCTTTGCTGCATGGCCTCTTTTGTGGAAACCGTGTATCACCAACTAC
CACAGCGATCGTGTTGGCGCTGTTGCCCATTGTAGTTCGTTTCAAAATCA
ATGTCCGTCGCATCGTCGTCGTCTCCATCAGGGCATTTCTTTGTGTCCGA
GCGAACTCGGGTTGGCTAGGGTAAGGTTCGAGAGTGAGGTCAAGCCGTCG
TGGACTGTTTTTCCCCGACCCTAAAGATTCCGTCAGCGTTCGCAGCACAG
AGGAGTCACCTTTGTCCAGATATGGATACCGCTGGGGTCATATTGCCCGA
GAGGATCCGCATCCGTATTATTCGTATGTGCGTATCTACAGCTGAGAAGA
TTCAATATCCTGGCATCCACACGGAGAAGACAAGAACGGAAGTACGAGTC
GAGAAGGACGTCATTGGGAATAAAGTGGTGAAATTGGTGTGCAGCCACGT
GCTGATGTGACGTGAGAAGATGTTGGTGATAATCAAAACTTCAATACTTC
AACCCCACGCGGGGCAGCATACAGCGGCGTGGTAGGCAGCCAGCCAAAGC
AACCTGGCCGTAGCTGGGGTAACGCACGAGGAAAAGGAAGAAATGTGTGA
TTTGGGGCGCGTAGAGATGCACTACAGGCGTCTTGAACGGCTGGAAAAAC
AAGAGAAAAAATGGGAGGGAATGAATGGGCAATGCATGTGCTCACGATGC
T

Coding sequence (CDS) from alignment at P-littoralis_Contig180:156071..157921+

>mRNA_P-littoralis_Contig180.51.1 ID=mRNA_P-littoralis_Contig180.51.1|Name=mRNA_P-littoralis_Contig180.51.1|organism=Pylaiella littoralis U1_48|type=CDS|length=180bp|location=Sequence derived from alignment at P-littoralis_Contig180:156071..157921+ (Pylaiella littoralis U1_48)
ATGGAGGTCGTGAAGGAAGTCGAAAATGTACCGACCACAGCCGACAAGCC
AAACGACGACGTCGTCATCGTAGATTGCGGAGAACTCGCCGAGGACGGGG
ATGATGTTACCCCGGCACCGACAGACGAGGCGCCTGCCGACGGGGGCTCC
ATGGAGGCGGAAAAGCCCGAAACGGATTAG