mRNA_P-littoralis_Contig18.51.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.51.1
Unique NamemRNA_P-littoralis_Contig18.51.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig18.51.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.650e-5
Identity = 26/78 (33.33%), Postives = 39/78 (50.00%), Query Frame = 1 
Query:  283 VYDMYLTEQKGLHGNISGA-----CSASHFNRIWREECQFLKLTQGRDFMLCNVCTLANQTLHGTPGGEATTDSSIRE 501
            +Y+ Y    + L+G    +     CS ++FN++W      LKL    DFMLC +CTL  + +HG  G     D + RE
Sbjct:  285 LYEEYSKNTRELYGQDPASLAERLCSKNYFNQVWSAHFGNLKLKPNGDFMLCEICTLLKEKIHGQAGSRGVLDEAERE 362
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJG9_9PHAE2.650e-533.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:232665..238925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size514
Hectar predicted targeting categoryother localisation
Exons2
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789862.1385505-CDS-P-littoralis_Contig18:232664..2328861680789862.1385505-CDS-P-littoralis_Contig18:232664..232886Pylaiella littoralis U1_48CDSP-littoralis_Contig18 232665..232886 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789862.1495035-UTR-P-littoralis_Contig18:232886..2328981680789862.1495035-UTR-P-littoralis_Contig18:232886..232898Pylaiella littoralis U1_48UTRP-littoralis_Contig18 232887..232898 -
1680789862.157987-UTR-P-littoralis_Contig18:238646..2389251680789862.157987-UTR-P-littoralis_Contig18:238646..238925Pylaiella littoralis U1_48UTRP-littoralis_Contig18 238647..238925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.51.1prot_P-littoralis_Contig18.51.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 232665..232886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.51.1

>prot_P-littoralis_Contig18.51.1 ID=prot_P-littoralis_Contig18.51.1|Name=mRNA_P-littoralis_Contig18.51.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
MYLTEQKGLHGNISGACSASHFNRIWREECQFLKLTQGRDFMLCNVCTLA
NQTLHGTPGGEATTDSSIRESTEA
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mRNA from alignment at P-littoralis_Contig18:232665..238925-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.51.1 ID=mRNA_P-littoralis_Contig18.51.1|Name=mRNA_P-littoralis_Contig18.51.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6261bp|location=Sequence derived from alignment at P-littoralis_Contig18:232665..238925- (Pylaiella littoralis U1_48)
AAGGATTAGACTGCCTGAGACGTTTCAAGGAGGACCCCAAGTACGATGCT
CGACTGCTGGCTGCTGAGCAAGATAAGCTTGCCAGCTTTACGCGAGAAAG
GGACCGAAAGGATTTCGCGAAGTCTCGAGTACCGATAATAAAGCCGGAGA
GAGGATCGATGCTAGCTGGAGGCGTCGTAGTCTGTGCAAGATTTTTTCGG
CTTGCTTCGGAATTTCGAACAACCTCATGTCATCAGTGAAGGGCTGCCCC
CGGGCACCTGCATCAAGCTCCGCGACGAGGTATGGTGGTTAACATACAGT
TTCGTCGTGTTTTGAGTCCATAGCAACAAATGTATCTCTTCGAATGTTGT
ACTCCATATATTTTACAAAATGTGTTCGTTGCTAATCTTGCTGGATTTCA
GGGCTTCGAACCCGGCGAGGACCAGCAGCTACTTGAGGAGCAAACTGTTC
CGCACTTGCTTGCCTATTGCCTAGTGTAGGTTAACCCTTCTGGGACCAGG
GTGTTTTGTTCCTTTTCATACGAACAGCCCGGGTTCCAAATCAGAACCAT
ACAATGTTCCCCCGAGAAAAAAAATATGGCTCAAATGTCCCTTTCAAATG
TACAGCAGTCACGAAACCAAGAGAAAATGTACACAACCGTACCACAAAGA
TATACAGCCAGGGCCCCTGAGGGAGGCTCACAGCGGGCTGGTTACGTCCC
TGGAGAGTACAGAAGGGATACCCGGTGGTCGAGATGCCGCGGCTAGCTCT
CAGGCTAAGTGTAACGTGTTCTAACCATCAATAGCGCTTAAAGTATCCAG
TCCCCTCAAAACAAGATAATAAGGAAAAAAAGTTACTGGTAGGAGTTACT
CGTTTCCCGCTGTAGCTCCCGGTCTGGTAAACGTACTTTTGCGCCGGGGC
CCCGTGGCCTGTGGCCGGTCTGAAGGCCGATCCTTTCTTCTCGCGCACAG
TAGGCACATCATTGGTACTGCTAGCAGCAGCAGCAGCAGCAGCAGCCGCA
GTAGTAATCTAGCAATCAATCGCATGTATATAAATATCTACAGACATGCT
GCTGCTGCTGTTGTCGCTGAGTATTGACCAAATAAAATAAGATACCATGA
TGTATCATACATAGAGGTATGACTCTCTACCTCTCTCCTACTACTACTGC
TCTTCTTGCTTGTTGTATCATACCAACAAGGGAGGAGGTATCATATTGCA
TGTGATGTACTGCTGTACAGCAGCGGCAGAAGTAGCAGTAATTGTAGTAG
GAGTAGTCTAGTGCTGCTGTAATGCTGGTGTGGTGTTGCACTTCAGAAAA
ATATGATACACTGCCAAGTGTATGTTATACTGGCCTGTGTCAGACGAGAT
GATTTCTGTGTCAGACGAGATGATTTCAGATTTCGACATGACGGGGATTT
ATTGTGTTGACTGAGTCTTGCTGGGCACCCTCACACCCCTTGACCACACA
CAGCAGCAGCTGTGAGCGGTGTTTGTTTGTCCTCTTGCCCGTATCTGAGT
GCAGCCGGAATGCTGCTCAACTCCCAACGTGAGGGGTTCGGGAATTATTT
GTTTCTGTCCCCGTCCCAAAGAGACTGGCAAATATAAAAATATATGAATA
TTATGATTAATTATTTGTATGCATTTATCACCTCAGAAGTTCCAGAGGTG
CAGAAGATGCCGCGTTGGCTGTCCAACAGCAGTGTGTCTGCACTACACAT
AAGATACCTGGACCCCGACCTTAAAAAAACTACTCCCGAATGACAGGGAC
TTGAGAAGCAGCGGTAATTTTTTGAAATTCGTGAGTACCTTACCCAAGAC
AAATGGGGAAGGGCGTGGGAAAGCTTCGCTGTCCGCAAGAAATACTTGTT
GTTTGAGTTAGGAGGGACATTCCTCTGTTCCACCACGGAATAGCGTAGAT
TGGCTATTCCAGGTTATTCCATCACTGTGAAATCTACGAAAGTAAGCGGC
GGACCCCGCCTGGGGGACGGCAGAGGAGCTCTTGTCCTTGTGCTGGCACA
GATGGGGCACATGAAAAACCGCACATATCTCGCCCAAAAGGGTTTGTAAC
TCGATGCCAACTACACCCCTAGAGAGATGAGTCTATTTCCCATCTGGTAC
GGCTAAGTTTTTAGGTCGTCGGGTGCCGTACCCAGCGAGAAAAATATGTT
TCCACGACTACTACTACTGCTGCTGCTTGCTGTGCTTCTGGAGGGCCATA
TCCTTCGTCGATGTTTGTATGTCACGTTTTCACGGAATACTTGCTCGCAA
AGATTACGACGAGCGGACCTGCCGACGACTACTTATGCAGGGAGGGTGGG
CGAGATGTAGCTTCGTCTTTCGGGCACATGTATGTGTGAGTCCATCATAC
AGCAGTACCACCACACAGCAGCAGTAGTTGTGGTAGTGTCATCATCAGTA
AAACAAACGTTTCAAAAAATCGCTGTCGGTGATGGATGGATCCAGCTCAA
CACGTCACGAACAGGTTTTATAAAATTTGCAGGAGGCGTCTCGCAAAAAG
TAACCGATTTGATTTTTCAGGACTGTCAACATCATCCAATTCTTGCCTGG
GAATCGACGATGACCGGCATTCACGGAACCCCCTTTTTTCGGGAGAATCG
ATTGTTTTCGGGAAAAGCAGGGAGTGTTGCTTGCTGCCGAAAGAGCACGC
CCAAAAACACGCACCGACCCATCCTCGCACTACCCCTCGACCCCAACCGG
ATCCATTCTGTCACTCCCACCCGACGAACGCTCACAACCCGGCTGTGTTC
TATAGTCTGATGTTAGAGTAGCAGCAGTAAACGCCAGCACTAGTTCCAGG
AAGAGGACGGGAGAGGGCTGTGGGTGCTTTGCCTATCGTTAGGGGCTCAA
TGCTGGTGGTTGTTTCTGCATACAGCAGTAGTACAGCAGTGTAGTATGAA
GTACGATTAGTACTGCTGACTCCACGACGAGTAGGTAGGTGACCACACAC
AGCAGTACCAGGACGAGGAGGCCACTCCGCGCACAGCACATAGACCTTTG
AGACTCCACAGTGAGAAATATAGAGAGGTTTTCAAACGATATCCCGACGT
AACTCAAACGCCAACCCAACGAAACTACCCCAACCCAAGCCACCCTTACA
ATCCCCCCTAACCCAACTTAACCCAACCGCCCCAACTCATCCGAACCCAA
CCCTAACCAACCCAAACCAACCCAACCATACGGTACCCTCCCCTACCCCT
CCCCCAGAGAGTGGGGCGCAACCCTACACAACTCAACTCAACCCGACCCA
ACTCTACCGAACTCAACCCTCCCCAACCCAACGCTACCCGACCCAACCCA
ACCCAACCATACGGTACCCCCAACCCCCCCTGGAGGGGGGGAGAGGGGGG
GCGCAACTCAACATAACACAACACAACACAACACAACCCCGATCATGAGT
GGGGGCGTAACCCTACAGACCCAACCCAACCGTACTGTACCCTCCCCAAC
CCCCCCAGAGGAGACAAGTTGCAAACTCGCGACCTCGCATGATCGCCCAA
ATTTGAGACTTTGTTTTTTTATCGGTCTCTTTCGACGCCTGCTTCATTTT
GGCCTGATAAAGCCGGATCGGGCTTCCGTGTTTCATACTCGCAAAGCCCC
AGTGGATTTGTTTCCATGTCAGAGTACCCGCTCAAGAAACGGAATAATCA
ATCAAGAGACAAAGCAAAAAAGGAATACTGCTGTCGTGCGAGTAGAGTAC
CACCCACTAAACAACCAACAATCAATAGTGATGATGTGGTATCATCTGTA
AAACATTGCGGGCTAGCCCACTTTCTTGTGCTCGATGGAACTCACGTCCC
GCCGCCTTCAACCTACTCCAGATAACAATACTGCTCGTGATTGTGCACCA
CAACAGTTGGTGTAGACAGACGGTTTTGCAAGCCAGCTTTTAATATCAGC
AGGCAGCCCGAAATTAGACAAAACGAAATCACACCCTTTCATCTATCTCT
ACAGACACCTTTGATGCTCGTTTTAGCAACACTCCGCTTCTGTACAGAGT
AGGTACAAATGGGGCTCCCAAAAAGCAGGGGAAAGGCCATGTACAGCAGC
ATATTGAAGCAGGTTCAAGGCGACGGGTAGGTGTGTATAGGTGTACAGAA
GCAGCAGCACGTGATCAAAGCTCTCGATTATCGCATGTTGGAATGAGAAC
GCACGGCGAATCATTTTATTTTTCCTGGAATAGTTGGATGTATTTTTTTG
TTTTTGCTGCTTCGCGCTCTCATTGCTCGGCTGCCTTGCGGGCTCCGATC
TCGCGCGGTTTGCTAAGCGGAAGCCTTAGGAAGCTTTTTGATATCGACGT
TGTTAGCGAGGCAGGGCAGTCAGCGGTGTCACGAGTCGACCATGTATAGA
GCTTTCTGGCATCGTCTTCGTGTGTGTGTGTCTTAGGGTTGGTACTCGTA
AAAGTAGTGCTGGTGTGCTGTGCTGTGCTACAGCAGCAGCAGTGCGGCAG
CACGGCAGAAGTATTTACTCGCTGGGTGTTCTCATCATGGTGTTGTGTAC
TCGTATCACAAGATTGATCGTGGGGGGTGATTTGGTGAGGAACGAAGCCC
CCCCGTGATGGCCGTCTGTGAATCCCCCGCTTGATGAAGCTTTGGTGAAG
AAAAGCTACTTTGTTTGATCGAGCGGGAATTTTGCAACTTGGGACGTCCT
CCCAAATCCTGCTTTATTTAGATGCCGAAAGAAGCAATGGAAAATTGCCC
TTTGTTTCACACTCGTAAAGCTATATCGCCCATTTCTCGGAATGTTTGGG
ATGAAGAGCCTAATACTGACTACGGTTATGCAAGGTCTCGATTTTGCAAC
GTGTCTAGGGGGGCACGCGACCCAACCCAACCCCCCAACCGTACGGTACC
CCATGCAACCCCCCCCAAACCCCCCCAGAGGGGAGGGCGCAACCCTACAC
AACTCACCCCAACCCAACCCTCCCCAACCCAACCCTACCCAATCGAACCA
AAACCAACCATACGGTATCCCCCCCAACCCCCCCACCCAACCCAGCCCAA
CACAACCCACACAACCCAATACAACACAACACAGCCCAACCGTACGGTAC
CCCCCCAACCCCCGAGGGGGGGCGCAACCTTTCCCTACCCAACCCAATCG
TGGGTGGGGGCAGCGCAACCCTACACAACCCAACTCAAATGAAAACACCA
CCCAACCAAACACAACCTAAAACCCCTGCCCAACCCCCTCCCGGCAACCC
AACCCAACCAAACACGACCCAAAACCCTACACAACCCAACTCAAATACAA
ACACCAACCCAACCATACGGTACCCCTCCCAACCCCCCCCAAAGGGGGCA
ACCCTACCCTACCCAACCAAACTAACCAACCCCGCCCAACACAACCCAAC
TCAACCCAACATCTTCCAACCCCCCCCCCCACAGGGGCCCGGTGAAGAAA
AGCTACTTTGCTTGATCAAGCGGGAACTCTGCAACTTAAAACATCCTTCC
AAACCCTGCTAAATTTAGATGCCGAAGGAAGGAAAAATTGCCCTTTGTTT
CACACTTGTAAAGCTATATCGCCCATTTCTCGGAATGTTTGGCATTAAGA
GCCGAATATTGGCTACGATCATGCAAGGTCTCGATTTTTTATGATGTGTC
TAGGGGGGCACGCGACCCAACCCAACTCCCCAACCGTACGGTATCCCCCC
CAACCCCCTCAACCCCCCCCAGAGGTGAGGGCGCAACCCTACACAACTCA
ACCCAACCCAACCCTCCCCAACCCAGCCCTACCCAATCGAACCAAACCCA
ACCAAACAATACCCCTCCCAATCCCCCCACCCAACCCAGTCCCAACCCCC
CGGGCGCAACCCTACCCTACTCAACCAAACCAACCAACCCAACGAAACAC
AACCCAACTCAACCCAACACCTCACCAACCCTCCCCCCCCGACAGGGGCC
CCGTGGTGGAATATTTTTTTACAAATAGTTTTGTGTTATTTTTTGACTCA
GAAAAATTGTTTGCAGTGCACTCGCGCGATTCAGTGGTTTAATGAGGCCT
AGCTCCGATTCGTTTTGTTGAAATCAGGGCGTCTACGACATGTACCTGAC
CGAACAGAAGGGGCTACATGGCAACATTTCCGGAGCCTGCAGCGCCTCGC
ACTTCAACAGGATTTGGAGGGAAGAATGCCAGTTTCTGAAGCTCACACAA
GGGAGAGACTTTATGCTCTGCAATGTTTGTACGCTAGCGAACCAAACCCT
TCATGGAACACCCGGGGGAGAGGCTACGACTGACTCGTCGATCAGAGAGT
CGACAGAAGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:232665..238925-

>mRNA_P-littoralis_Contig18.51.1 ID=mRNA_P-littoralis_Contig18.51.1|Name=mRNA_P-littoralis_Contig18.51.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig18:232665..238925- (Pylaiella littoralis U1_48)
ATGTACCTGACCGAACAGAAGGGGCTACATGGCAACATTTCCGGAGCCTG
CAGCGCCTCGCACTTCAACAGGATTTGGAGGGAAGAATGCCAGTTTCTGA
AGCTCACACAAGGGAGAGACTTTATGCTCTGCAATGTTTGTACGCTAGCG
AACCAAACCCTTCATGGAACACCCGGGGGAGAGGCTACGACTGACTCGTC
GATCAGAGAGTCGACAGAAGCG
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