mRNA_P-littoralis_Contig179.85.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A6H5KU33_9PHAE (MEP9 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU33_9PHAE) HSP 1 Score: 100 bits (248), Expect = 8.780e-20 Identity = 68/191 (35.60%), Postives = 104/191 (54.45%), Query Frame = 2
Query: 29 HRDSWM-DVNGNEHAINALSNIHRLTTCHTSFSTDHRALGRLQPYKRSPAILWRNRTVFNGSSSPRAMFE-------AWTPCETRFNHLQSALSVTDST--AVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVID 571
HR + + DV+GN+ I AL + +T + L ++ +IL ++ F G++ E + + N SV+D + A+KLV+LDE D LT+ +Q ALRHLI+ + RFCLCCNY+N+LSSG+RSRCT+F FSGI ++ L V R+++S E L+AV++
Sbjct: 8 HRPTRLQDVSGNDQVIRALQTFKSME------ATPNLILHGPPGSGKTSSILSMAKSFFGGTNISTMTLELNAGDSRSIGTMRDQINFFTRCSSVSDKSTNALKLVILDEADGLTSCAQRALRHLIETTCGRARFCLCCNYINRLSSGLRSRCTSFSFSGIGNVQLARTLRKVAHKERLEISEEGLNAVVN 192
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: Q8QN66_ESV1K (EsV-1-224 n=2 Tax=root TaxID=1 RepID=Q8QN66_ESV1K) HSP 1 Score: 97.1 bits (240), Expect = 1.420e-19 Identity = 68/191 (35.60%), Postives = 102/191 (53.40%), Query Frame = 2
Query: 29 HRDSWM-DVNGNEHAINALSNIHRLTTCHTSFSTDHRALGRLQPYKRSPAILWRNRTVFNGSSSPRAMFEAWTPCETR--------FNHLQSALSVTD--STAVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVI 568
HR + + DV+GN+H I AL + TS T + P + + F G ++ M ++R + SVTD + A+KLV+LDE D LT+ +Q ALRHLI+ ++ RFCLCCNY+++LSSG+RSRCT+F FSGI ++ L V + +++S E L+AV+
Sbjct: 8 HRPTRLQDVSGNDHVIRALQSF-------TSMETTPNMILHGPPGSGKTSSIISMAKSFFGRTNISIMTLELNAGDSRSIGTMRDQIHFFTRCSSVTDRSTNALKLVILDEADGLTSCAQRALRHLIETTSGRARFCLCCNYISRLSSGLRSRCTSFSFSGIGNVQLAHTLREVARKEDLEISEEGLNAVV 191
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A139XXX9_TOXGO (Replication factor C subunit (Fragment) n=1 Tax=Toxoplasma gondii ARI TaxID=1074872 RepID=A0A139XXX9_TOXGO) HSP 1 Score: 83.6 bits (205), Expect = 1.100e-15 Identity = 46/128 (35.94%), Postives = 75/128 (58.59%), Query Frame = 2
Query: 185 RNRTVFNGSSSPRAMFEAWTPCETRFNHLQSALSVTDSTAVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVI 568
+NR +F S+ P A E +H Q ++KL++LDE D +TN +Q ALR +++ VRFCL CN+VNK++ I+SRCT FRF+ + + ++ ++Q +MK+S + LDA++
Sbjct: 46 QNRLIFGKSAVP-----ATEAAEATSSHGQEKKGQ-GGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALV 167
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A165FU20_EXIGL (DNA replication factor n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165FU20_EXIGL) HSP 1 Score: 86.3 bits (212), Expect = 1.280e-15 Identity = 41/91 (45.05%), Postives = 65/91 (71.43%), Query Frame = 2
Query: 296 STAVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVI 568
S + KL++LDE D +TN +Q ALR +I++ T VRFC+ CNYVNK++ I+SRCT FRFS +P +R + +V+ M ++K+ + +DA++
Sbjct: 126 SKSFKLIILDEADMMTNAAQSALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIEDVRRRVEHVVDMEKVKIEPDGMDALL 216
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A381VEQ7_9ZZZZ (AAA domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381VEQ7_9ZZZZ) HSP 1 Score: 85.9 bits (211), Expect = 1.420e-15 Identity = 37/90 (41.11%), Postives = 64/90 (71.11%), Query Frame = 2
Query: 305 VKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVIDM 574
+K+++LDE D +TN++QCALR +I++ + VRFC+ CNY+NK+ I+SRC FRFS + +MR + YV++ ++K+S + + +I +
Sbjct: 104 LKIIILDEADYMTNIAQCALRQIIEKYSKNVRFCIICNYINKIIPAIQSRCMKFRFSLLTDDEMRNKIEYVVKQEKLKISDKAITTIISL 193
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A086M2G2_TOXGO (Putative replication factor C, subunit 5 (Fragment) n=1 Tax=Toxoplasma gondii RUB TaxID=935652 RepID=A0A086M2G2_TOXGO) HSP 1 Score: 83.6 bits (205), Expect = 2.700e-15 Identity = 46/128 (35.94%), Postives = 75/128 (58.59%), Query Frame = 2
Query: 185 RNRTVFNGSSSPRAMFEAWTPCETRFNHLQSALSVTDSTAVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVI 568
+NR +F S+ P A E +H Q ++KL++LDE D +TN +Q ALR +++ VRFCL CN+VNK++ I+SRCT FRF+ + + ++ ++Q +MK+S + LDA++
Sbjct: 1 QNRLIFGKSAVP-----ATEAAEATSSHGQEKKGQ-GGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALV 122
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A086Q7R5_TOXGO (Putative replication factor C, subunit 5 (Fragment) n=1 Tax=Toxoplasma gondii VAND TaxID=933077 RepID=A0A086Q7R5_TOXGO) HSP 1 Score: 83.6 bits (205), Expect = 5.260e-15 Identity = 46/128 (35.94%), Postives = 75/128 (58.59%), Query Frame = 2
Query: 185 RNRTVFNGSSSPRAMFEAWTPCETRFNHLQSALSVTDSTAVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVI 568
+NR +F S+ P A E +H Q ++KL++LDE D +TN +Q ALR +++ VRFCL CN+VNK++ I+SRCT FRF+ + + ++ ++Q +MK+S + LDA++
Sbjct: 131 QNRLIFGKSAVP-----ATEAAEATSSHGQEKKGQ-GGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALV 252
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: C1MVS5_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MVS5_MICPC) HSP 1 Score: 84.3 bits (207), Expect = 5.650e-15 Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query: 7 LWVERYRPSRLVDGCQRERTCH*CTFEYSSIDDMPHLLLHGPPGSGKTSAVQAIAGNFMAEQDCLQWLKLTASDVRGVDTMRNQIQSFTKCFVCYRFNSS 306
+WVE+YRPSRL D + + D +PHLLL+GPPG+GKTS + A+A L+L ASD RG+D +RN+IQSF RFN++
Sbjct: 1 MWVEKYRPSRLADVAAHKDIID-TIGRLTKEDKLPHLLLYGPPGTGKTSTILAVAKELYGPAFAQMTLELNASDDRGIDVVRNEIQSFASTM---RFNAT 96
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A086KIM9_TOXGO (Putative replication factor C, subunit 5 (Fragment) n=1 Tax=Toxoplasma gondii p89 TaxID=943119 RepID=A0A086KIM9_TOXGO) HSP 1 Score: 83.2 bits (204), Expect = 5.860e-15 Identity = 46/128 (35.94%), Postives = 75/128 (58.59%), Query Frame = 2
Query: 185 RNRTVFNGSSSPRAMFEAWTPCETRFNHLQSALSVTDSTAVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVI 568
+NR +F S+ P A E +H Q ++KL++LDE D +TN +Q ALR +++ VRFCL CN+VNK++ I+SRCT FRF+ + + ++ ++Q +MK+S + LDA++
Sbjct: 1 QNRLIFGKSAVP-----ATEGAEATSSHGQEKKGQ-GGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALV 122
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A0F7US02_TOXGV (Activator 1 36 kDa, putative n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=A0A0F7US02_TOXGV) HSP 1 Score: 83.6 bits (205), Expect = 1.770e-14 Identity = 46/128 (35.94%), Postives = 75/128 (58.59%), Query Frame = 2
Query: 185 RNRTVFNGSSSPRAMFEAWTPCETRFNHLQSALSVTDSTAVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVI 568
+NR +F S+ P A E +H Q ++KL++LDE D +TN +Q ALR +++ VRFCL CN+VNK++ I+SRCT FRF+ + + ++ ++Q +MK+S + LDA++
Sbjct: 132 QNRLIFGKSAVP-----ATEAAEATSSHGQEKKGQ-GGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALV 253 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig179.85.1 >prot_P-littoralis_Contig179.85.1 ID=prot_P-littoralis_Contig179.85.1|Name=mRNA_P-littoralis_Contig179.85.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp MPHLLLHGPPGSGKTSAVQAIAGNFMAEQDCLQWLKLTASDVRGVDTMRNback to top mRNA from alignment at P-littoralis_Contig179:430850..431754- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig179.85.1 ID=mRNA_P-littoralis_Contig179.85.1|Name=mRNA_P-littoralis_Contig179.85.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=905bp|location=Sequence derived from alignment at P-littoralis_Contig179:430850..431754- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig179:430850..431754- >mRNA_P-littoralis_Contig179.85.1 ID=mRNA_P-littoralis_Contig179.85.1|Name=mRNA_P-littoralis_Contig179.85.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig179:430850..431754- (Pylaiella littoralis U1_48)back to top |