mRNA_P-littoralis_Contig179.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig179.53.1
Unique NamemRNA_P-littoralis_Contig179.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig179.53.1 vs. uniprot
Match: D7G5X1_ECTSI (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5X1_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 9.110e-22
Identity = 46/74 (62.16%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 QDVLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCK 222
            Q VLDR+  R  D GYCLA RVR+QVY+ A+ DL C G GNQC AG CM AA  V+AG G   VP ETVRA+CK
Sbjct:   64 QKVLDREVSRDGDAGYCLAKRVRHQVYYGASADLLCKGMGNQCTAGACMRAAAQVYAGDGTDGVPAETVRAMCK 137
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BLAST of mRNA_P-littoralis_Contig179.53.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.910e-21
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    1 QDVLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCKF 225
            QDV  R     +D GYC+A RVRNQVY++ AKDLGC+G GNQ KAG+CM AA  VFAG GN  +PTE V+A+ ++
Sbjct:   18 QDVCTRYK---DDPGYCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFAGDGNDGLPTEVVKAMLQY 89
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BLAST of mRNA_P-littoralis_Contig179.53.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.660e-21
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    7 VLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCK 222
            VLDRQ     D GYCLA RVRNQVY++ + DL C+G GNQC AG CM AAL VFAG+    +P+E VRA+CK
Sbjct:  108 VLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCK 179
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BLAST of mRNA_P-littoralis_Contig179.53.1 vs. uniprot
Match: A0A6H5KBF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.180e-20
Identity = 44/72 (61.11%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    7 VLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCK 222
            VLDRQ  R  D GYCLA RVR QVY+EA+ DL C G  NQC AG CM AA  V+   G   VP ETVRA+CK
Sbjct:    3 VLDRQVSRDGDAGYCLANRVRYQVYYEASADLLCKGMDNQCTAGACMRAAAQVYVEDGTDGVPAETVRAMCK 74
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BLAST of mRNA_P-littoralis_Contig179.53.1 vs. uniprot
Match: A0A6H5JMB2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB2_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.760e-20
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:   16 RQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCKF 225
            RQ +   D GYCLA RVRNQVY++   DL   GAGNQC A +CM AAL VF+GKGN  +PTE VRA+C +
Sbjct:    9 RQLKLDGDPGYCLAKRVRNQVYYDTPTDLLAKGAGNQCTAAECMVAALKVFSGKGNKGIPTEIVRAMCMY 78
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BLAST of mRNA_P-littoralis_Contig179.53.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 9.320e-19
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 QDVLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRAL 216
            QDV  R     +D GYC+A RVRNQ Y++ AKDLGC+G GNQ KAG+CM AA  VFAG GN  +PTE V+A+
Sbjct:  109 QDVFTRYK---DDPGYCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFAGDGNDGLPTEVVKAM 177
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig179.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G5X1_ECTSI9.110e-2262.16Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKJ8_9PHAE3.910e-2158.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG3_9PHAE4.660e-2161.11Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBF5_9PHAE2.180e-2061.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMB2_9PHAE6.760e-2060.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG83_9PHAE9.320e-1959.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig179contigP-littoralis_Contig179:250041..250344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size304
Hectar predicted targeting categoryother localisation
Exons1
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789858.8821945-CDS-P-littoralis_Contig179:250040..2502681680789858.8821945-CDS-P-littoralis_Contig179:250040..250268Pylaiella littoralis U1_48CDSP-littoralis_Contig179 250041..250268 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789858.8953047-UTR-P-littoralis_Contig179:250268..2503441680789858.8953047-UTR-P-littoralis_Contig179:250268..250344Pylaiella littoralis U1_48UTRP-littoralis_Contig179 250269..250344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig179.53.1prot_P-littoralis_Contig179.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig179 250041..250268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig179.53.1

>prot_P-littoralis_Contig179.53.1 ID=prot_P-littoralis_Contig179.53.1|Name=mRNA_P-littoralis_Contig179.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=76bp
QDVLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMS
AALGVFAGKGNAAVPTETVRALCKF*
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mRNA from alignment at P-littoralis_Contig179:250041..250344+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig179.53.1 ID=mRNA_P-littoralis_Contig179.53.1|Name=mRNA_P-littoralis_Contig179.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=304bp|location=Sequence derived from alignment at P-littoralis_Contig179:250041..250344+ (Pylaiella littoralis U1_48)
CAGGATGTTCTCGACCGGCAGACGCAAAGGGGTGAAGATGTTGGGTATTG
CCTCGCGACGCGTGTGCGCAACCAGGTCTATCACGAGGCCGCAAAGGATC
TCGGGTGCTATGGAGCCGGCAACCAGTGCAAGGCTGGGAAGTGCATGAGC
GCAGCTCTTGGCGTTTTCGCCGGCAAGGGCAATGCCGCCGTCCCGACCGA
GACTGTTCGGGCGCTCTGCAAATTCTAGTTTTTTTAATCAAGTGCTCGGT
CACATATGTTTTAGTTCAAGAAATCGTAGGTGTCGTTATCCACGGAGAGC
GCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig179:250041..250344+

>mRNA_P-littoralis_Contig179.53.1 ID=mRNA_P-littoralis_Contig179.53.1|Name=mRNA_P-littoralis_Contig179.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig179:250041..250344+ (Pylaiella littoralis U1_48)
CAGGATGTTCTCGACCGGCAGACGCAAAGGGGTGAAGATGTTGGGTATTG
CCTCGCGACGCGTGTGCGCAACCAGGTCTATCACGAGGCCGCAAAGGATC
TCGGGTGCTATGGAGCCGGCAACCAGTGCAAGGCTGGGAAGTGCATGAGC
GCAGCTCTTGGCGTTTTCGCCGGCAAGGGCAATGCCGCCGTCCCGACCGA
GACTGTTCGGGCGCTCTGCAAATTCTAG
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