mRNA_P-littoralis_Contig176.90.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.90.1
Unique NamemRNA_P-littoralis_Contig176.90.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig176.90.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 6.210e-6
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   34 IQGHPDELDDDNLEGEDSQDEEEQDLDILAPVAATLNEYSEQ 159
            I G  ++LDDDN+ GEDS DE EQDL+IL+PVAA LNE+S Q
Sbjct:   50 ILGFSEDLDDDNMVGEDSDDEVEQDLEILSPVAAMLNEHSGQ 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KW14_9PHAE6.210e-666.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:259397..259822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789845.0835252-CDS-P-littoralis_Contig176:259397..2595161680789845.0835252-CDS-P-littoralis_Contig176:259397..259516Pylaiella littoralis U1_48CDSP-littoralis_Contig176 259398..259516 -
1680789845.0961354-CDS-P-littoralis_Contig176:259782..2598221680789845.0961354-CDS-P-littoralis_Contig176:259782..259822Pylaiella littoralis U1_48CDSP-littoralis_Contig176 259783..259822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.90.1prot_P-littoralis_Contig176.90.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 259398..259822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.90.1

>prot_P-littoralis_Contig176.90.1 ID=prot_P-littoralis_Contig176.90.1|Name=mRNA_P-littoralis_Contig176.90.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
DRAHGGDSPTPIQGHPDELDDDNLEGEDSQDEEEQDLDILAPVAATLNEY
SEQ
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mRNA from alignment at P-littoralis_Contig176:259397..259822-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.90.1 ID=mRNA_P-littoralis_Contig176.90.1|Name=mRNA_P-littoralis_Contig176.90.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig176:259397..259822- (Pylaiella littoralis U1_48)
GACCGCGCGCATGGAGGTGATTCTCCAACGCCAATCCAAGGTACCTTTGG
CTATTTTGCAAAACACACTACGGGTTCTGACCCTTGAACGTCTGCAGTGG
TTGCCGTTGTTTGTCACATGCTAAAACAAAAATATGACTCCCTGTCCCTG
CTCGGTACCTTGTTCCATCGCGAACGTCGTCCATGGCCACATATTTGTTC
AAAGATTCGTGATAATATTGAAGAACCCATAATCCGGAGTAGGATTCACC
ATTACAGAAAATCAGGCCTTGGAGCTCATGCGTTCAACTGTTCGATCTGA
TTCAAGGTCACCCGGATGAATTGGACGATGACAACCTGGAGGGAGAAGAC
TCACAAGATGAGGAGGAACAGGATTTGGATATTCTAGCCCCCGTCGCTGC
AACGCTGAATGAGTACTCAGAGCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig176:259397..259822-

>mRNA_P-littoralis_Contig176.90.1 ID=mRNA_P-littoralis_Contig176.90.1|Name=mRNA_P-littoralis_Contig176.90.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig176:259397..259822- (Pylaiella littoralis U1_48)
GACCGCGCGCATGGAGGTGATTCTCCAACGCCAATCCAAGGTCACCCGGA
TGAATTGGACGATGACAACCTGGAGGGAGAAGACTCACAAGATGAGGAGG
AACAGGATTTGGATATTCTAGCCCCCGTCGCTGCAACGCTGAATGAGTAC
TCAGAGCAG
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