mRNA_P-littoralis_Contig176.88.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.88.1
Unique NamemRNA_P-littoralis_Contig176.88.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig176.88.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 4.980e-30
Identity = 66/99 (66.67%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:    1 GNGRVDVVGSGSVGEISNVRVSQDSSAGGESLEWTDALPLEDAEVSKLLQELALGGGEDDASLGDFDEDFLGQPIDLEEVFSSSPKSNLAGAHGSTRKE 297
            GNG V+V G G  G+ISNV V++ S+ GGE LEW DA+PLE+A +SKLLQELA+  GEDDASLGDFDE+FL + ID +EVF SSPKSNLA A G TR E
Sbjct:  370 GNGPVNVAGDGGDGKISNVWVNRVSATGGEGLEWIDAVPLEEAVMSKLLQELAVEDGEDDASLGDFDEEFLARSIDFDEVFPSSPKSNLADAQGPTRVE 468
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9K2_9PHAE4.980e-3066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:257219..257515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size297
Hectar predicted targeting categoryother localisation
Exons1
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789847.944854-CDS-P-littoralis_Contig176:257218..2575151680789847.944854-CDS-P-littoralis_Contig176:257218..257515Pylaiella littoralis U1_48CDSP-littoralis_Contig176 257219..257515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.88.1prot_P-littoralis_Contig176.88.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 257219..257515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.88.1

>prot_P-littoralis_Contig176.88.1 ID=prot_P-littoralis_Contig176.88.1|Name=mRNA_P-littoralis_Contig176.88.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
GNGRVDVVGSGSVGEISNVRVSQDSSAGGESLEWTDALPLEDAEVSKLLQ
ELALGGGEDDASLGDFDEDFLGQPIDLEEVFSSSPKSNLAGAHGSTRKE
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mRNA from alignment at P-littoralis_Contig176:257219..257515-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.88.1 ID=mRNA_P-littoralis_Contig176.88.1|Name=mRNA_P-littoralis_Contig176.88.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig176:257219..257515- (Pylaiella littoralis U1_48)
GGAAACGGGCGAGTCGATGTGGTGGGGAGCGGCAGTGTTGGCGAAATTTC
GAACGTCAGGGTTAGCCAGGACTCGTCGGCGGGCGGCGAAAGTCTTGAAT
GGACCGATGCCTTGCCGTTAGAGGATGCCGAGGTGTCGAAGCTGCTGCAA
GAATTGGCTCTGGGGGGTGGGGAAGATGACGCGTCTCTCGGAGACTTCGA
CGAAGATTTTTTGGGTCAACCTATCGATCTTGAGGAGGTATTTTCGTCCT
CGCCGAAATCGAACCTGGCGGGTGCCCACGGTTCAACGAGGAAAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig176:257219..257515-

>mRNA_P-littoralis_Contig176.88.1 ID=mRNA_P-littoralis_Contig176.88.1|Name=mRNA_P-littoralis_Contig176.88.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig176:257219..257515- (Pylaiella littoralis U1_48)
GGAAACGGGCGAGTCGATGTGGTGGGGAGCGGCAGTGTTGGCGAAATTTC
GAACGTCAGGGTTAGCCAGGACTCGTCGGCGGGCGGCGAAAGTCTTGAAT
GGACCGATGCCTTGCCGTTAGAGGATGCCGAGGTGTCGAAGCTGCTGCAA
GAATTGGCTCTGGGGGGTGGGGAAGATGACGCGTCTCTCGGAGACTTCGA
CGAAGATTTTTTGGGTCAACCTATCGATCTTGAGGAGGTATTTTCGTCCT
CGCCGAAATCGAACCTGGCGGGTGCCCACGGTTCAACGAGGAAAGAG
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