mRNA_P-littoralis_Contig176.86.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.86.1
Unique NamemRNA_P-littoralis_Contig176.86.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig176.86.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.750e-60
Identity = 106/128 (82.81%), Postives = 116/128 (90.62%), Query Frame = 1
Query:  124 QDILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEAPVPAATGPATVVNPYAPSK 507
            Q ILEHRF  +RAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSG+DF  SDYR++IMLAV++AE AENVRARSRNS  AVLCPRYI+VEPL+A PVVEAPVPAA G +T+VNPYA SK
Sbjct:  237 QIILEHRFKDVRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVEAPVPAAQGSSTIVNPYASSK 364          
BLAST of mRNA_P-littoralis_Contig176.86.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 1.200e-53
Identity = 101/120 (84.17%), Postives = 109/120 (90.83%), Query Frame = 1
Query:  148 AHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEAPVPAATGPATVVNPYAPSK 507
            AHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYR +IMLAV++A  AENVR+RSRNS  AVLCPRYI+VEPL+A PVVE  VPAA G +T+VNPYA SK
Sbjct:  917 AHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRGRIMLAVTQAVAAENVRSRSRNSPNAVLCPRYISVEPLAATPVVETSVPAAQGSSTIVNPYASSK 1036          
BLAST of mRNA_P-littoralis_Contig176.86.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 2.230e-39
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 1
Query:    1 LRLTILGFVGTCRYFFEHPDCFGVDDLSSNADRFINPRTFSQDILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRN--ARSGDDFNVSDYRAK--IMLAVSEAETAENVRARSRNSSVAVLCPRYITV 417
            LRL+ILGFV  CRY FE P+ F +D LS N  RF++PR  SQDI EHRF+HIRA LGT RNPTA +AK+RS  GDL R  +G  R N +RN  ARSG DF       K  I+LAV++ ET + VRA  RN+   VLCPRY+ +
Sbjct:  138 LRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRNPNARSGGDFEEHGDSEKKAIILAVTKVETGKEVRAWCRNTPAEVLCPRYMDI 280          
BLAST of mRNA_P-littoralis_Contig176.86.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.160e-37
Identity = 80/149 (53.69%), Postives = 97/149 (65.10%), Query Frame = 1
Query:    1 LRLTILGFVGTCRYFFEHPDCFGVDDLSSNADRFINPRTFSQDILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVE 447
            +R+ ILGFV  CRY FE    F V         FIN R   QD++EH F H+R GLG+ RNPTAAQAKER  RGD+ RGLHG  RAN+NRNAR G DF  S YRA++ML V E E +  +RAR+++S  AVL P YI+V    A PV +
Sbjct:  619 IRVCILGFVSMCRYLFEEDSRFKVSPRRP-WPHFINQRNCGQDVIEHCFGHMRQGLGSHRNPTAAQAKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISVAAPGATPVAD 766          
BLAST of mRNA_P-littoralis_Contig176.86.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.820e-28
Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 1
Query:  124 QDILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITV 417
            +D +EHRF H R GLG+ RNPTA QAKER+ RGDLNRGL GGSRAN NR +R G+DF  S  R +I+L V++ E +  +RA SRN + AV+ PRY++V
Sbjct:   66 RDPVEHRFGHTRQGLGSHRNPTATQAKERAARGDLNRGLQGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSV 163          
BLAST of mRNA_P-littoralis_Contig176.86.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.910e-24
Identity = 63/122 (51.64%), Postives = 78/122 (63.93%), Query Frame = 1
Query:  154 IRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEA-----PVPAATGPATVV-NPYAP 501
            +R GLG+ RNPTA QAKER+ RGDLNRGL GGSRAN NR +R G DF  S  R +I+L V++ E +  +RA SRN + AV+  RY++V    A P VE        PA+ G   VV N YAP
Sbjct:    1 MRQGLGSHRNPTATQAKERAARGDLNRGLRGGSRANHNRTSRKGSDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGGASQESTPASAGQTPVVFNSYAP 122          
BLAST of mRNA_P-littoralis_Contig176.86.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 8.830e-24
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 1
Query:  127 DILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVV 444
            DI EHR+ H+  GLG+  NPT A+AKER+ RGDL R LHG SRA  N+NAR G+DF  S  R +I+L V++AE +  +RA S+N + AV+ PRYI+++   A PVV
Sbjct:  530 DIEEHRYGHMHQGLGSHSNPTCAEAKERAERGDLQRSLHGVSRAKHNQNARKGEDFIASGIRGRIILPVTDAERSATMRAPSKNPASAVMFPRYISIDKPHADPVV 635          
BLAST of mRNA_P-littoralis_Contig176.86.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.330e-22
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 1
Query:  154 IRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVE 420
            +R  LG+  NP AAQAKER+ RGDL R LHG SRAN N+NAR G+DF  S  R +IML V++AE +  +RA SRN   AV+ PRYI+++
Sbjct:    1 MRQSLGSHSNPIAAQAKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISID 89          
BLAST of mRNA_P-littoralis_Contig176.86.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.620e-21
Identity = 56/109 (51.38%), Postives = 68/109 (62.39%), Query Frame = 1
Query:    1 LRLTILGFVGTCRYFFEHPDCFGVDDLSSNADRFINPRTFSQDILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIML 327
            +R+ ILG V  CRY FE    F +  LS +   FIN R   QDI+EHR+ H+   LG+  NPTAAQAKER+ + DL R LHG SRAN    AR G+DF  S  R +IML
Sbjct:  104 IRVCILGTVSMCRYLFEKDSRFKIYPLS-DVPHFINLRCIGQDIVEHRYGHMCQCLGSHCNPTAAQAKERAAQEDLQRSLHGISRANH---ARKGEDFIASGIRGRIML 208          
BLAST of mRNA_P-littoralis_Contig176.86.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.430e-19
Identity = 60/129 (46.51%), Postives = 78/129 (60.47%), Query Frame = 1
Query:    1 LRLTILGFVGTCRYFFEHPDCFGVDDLSSNADRFINPRTFSQDILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRA-KIMLAVSEAETAENVRARSRNSS 384
            +R TILGFV  CRY F+       +DL S   RF+ PR FSQDILEHRFAHIR+G GT +NPTA QA E +  GD  R  HG  R N +R+A  G  F + D +  +     + +E A+ VRA +R+ +
Sbjct:  541 MRTTILGFVAMCRYVFKD------EDLVSGG-RFLYPRMFSQDILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSA--GMAFQLEDSQGVRAAFPANASERAQVVRAETRDDA 660          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5K6I9_9PHAE1.750e-6082.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI1.200e-5384.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5I6_9PHAE2.230e-3955.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE1.160e-3753.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2C2_9PHAE1.820e-2858.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K630_9PHAE1.910e-2451.64Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X1_9PHAE8.830e-2452.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB63_9PHAE1.330e-2256.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE4.620e-2151.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE2.430e-1946.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:247762..248550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size511
Hectar predicted targeting categoryother localisation
Exons2
Cds size510
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789847.8235753-CDS-P-littoralis_Contig176:247761..2481451680789847.8235753-CDS-P-littoralis_Contig176:247761..248145Pylaiella littoralis U1_48CDSP-littoralis_Contig176 247762..248145 -
1680789847.8357189-CDS-P-littoralis_Contig176:248424..2485501680789847.8357189-CDS-P-littoralis_Contig176:248424..248550Pylaiella littoralis U1_48CDSP-littoralis_Contig176 248425..248550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.86.1prot_P-littoralis_Contig176.86.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 247762..248550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.86.1

>prot_P-littoralis_Contig176.86.1 ID=prot_P-littoralis_Contig176.86.1|Name=mRNA_P-littoralis_Contig176.86.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
LRLTILGFVGTCRYFFEHPDCFGVDDLSSNADRFINPRTFSQDILEHRFA
HIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNV
SDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEA
PVPAATGPATVVNPYAPSK*
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mRNA from alignment at P-littoralis_Contig176:247762..248550-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.86.1 ID=mRNA_P-littoralis_Contig176.86.1|Name=mRNA_P-littoralis_Contig176.86.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=789bp|location=Sequence derived from alignment at P-littoralis_Contig176:247762..248550- (Pylaiella littoralis U1_48)
TTGCGCCTCACCATCCTGGGCTTCGTGGGTACCTGCCGCTACTTCTTCGA GCACCCCGACTGCTTCGGCGTCGACGACCTGTCCTCTAATGCCGACCGGT TCATCAATCCGCGCACGTTCAGCCAGGTTGGTCTCGTTACGAAACGCTTG TGACGCAACTTCATATGCGCCTTCCGTAACAGAACGATTCGCGAGTTTTT TTAAGGGGGGGATTGAGGGGGTATCTACTTCGTATGTTTTTTTTTGTAAT ATTGTGCCTCCGCGTGACACAGCCTGGGACGTTTGCTAGCGGAAGGCGCC CAATCGTCCCTTCTTGGACACGATGTGTAGTATCTAAATCCATGCCGTAT TGTTGCCGCCTGCACACTAAACCCACCGCCATCCCCCCCGCCCATACCGC CACAGGACATTCTCGAACACCGGTTTGCCCACATCCGTGCGGGGTTGGGG ACATTGAGGAACCCCACGGCGGCACAGGCGAAGGAGAGGTCCGTACGCGG CGACCTCAACCGAGGTCTACATGGAGGTTCACGGGCGAACTTCAACCGCA ACGCGCGGTCCGGCGATGACTTCAACGTCTCCGATTACAGGGCCAAAATC ATGTTGGCAGTATCAGAGGCGGAGACCGCCGAGAATGTTCGCGCGCGATC CAGGAATTCATCTGTCGCTGTTTTGTGTCCGCGTTACATTACCGTTGAAC CCCTTTCGGCGCCCCCGGTAGTAGAGGCCCCCGTCCCGGCCGCCACGGGC CCGGCGACAGTTGTGAACCCATACGCGCCGTCGAAGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig176:247762..248550-

>mRNA_P-littoralis_Contig176.86.1 ID=mRNA_P-littoralis_Contig176.86.1|Name=mRNA_P-littoralis_Contig176.86.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig176:247762..248550- (Pylaiella littoralis U1_48)
TTGCGCCTCACCATCCTGGGCTTCGTGGGTACCTGCCGCTACTTCTTCGA
GCACCCCGACTGCTTCGGCGTCGACGACCTGTCCTCTAATGCCGACCGGT
TCATCAATCCGCGCACGTTCAGCCAGGACATTCTCGAACACCGGTTTGCC
CACATCCGTGCGGGGTTGGGGACATTGAGGAACCCCACGGCGGCACAGGC
GAAGGAGAGGTCCGTACGCGGCGACCTCAACCGAGGTCTACATGGAGGTT
CACGGGCGAACTTCAACCGCAACGCGCGGTCCGGCGATGACTTCAACGTC
TCCGATTACAGGGCCAAAATCATGTTGGCAGTATCAGAGGCGGAGACCGC
CGAGAATGTTCGCGCGCGATCCAGGAATTCATCTGTCGCTGTTTTGTGTC
CGCGTTACATTACCGTTGAACCCCTTTCGGCGCCCCCGGTAGTAGAGGCC
CCCGTCCCGGCCGCCACGGGCCCGGCGACAGTTGTGAACCCATACGCGCC
GTCGAAGTAG
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