mRNA_P-littoralis_Contig176.63.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.63.2
Unique NamemRNA_P-littoralis_Contig176.63.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 7.310e-63
Identity = 129/305 (42.30%), Postives = 173/305 (56.72%), Query Frame = 1
Query:    1 NAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 744
            N+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L   A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I+TGG+ EK R+T+VLAV  DG+KV PRII+KG PF+                               +PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E +   L   A T+V+++ GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:   32 NSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSG-KLKPPERG 334          
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 7.220e-61
Identity = 130/305 (42.62%), Postives = 173/305 (56.72%), Query Frame = 1
Query:    1 NAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 744
            N+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L + A E                               +F  L NMDQTP+Q E+P +TT+EKTG K A I+TGG+ EK R+T+VLAV  DG+KV PRII+KG PF   T +                         G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + G LTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:   32 NSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSG-KLKPPERG 334          
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 1.550e-59
Identity = 127/305 (41.64%), Postives = 172/305 (56.39%), Query Frame = 1
Query:    1 NAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 744
            N+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KL  +L + A E                               +F  + NMDQ P+Q EMP +TT++KTG K A I+TGG  EK R+T+VLAV  DG+KV PRII++G PF+  T +                         G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH +E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:  226 NSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSG-KLKPPERG 529          
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 2.300e-55
Identity = 128/313 (40.89%), Postives = 171/313 (54.63%), Query Frame = 1
Query:    1 NAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDF--------MRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 744
            N+WY RF KR+ FSIRR+ SVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+E TG K A I+TGG+ EK R+T+VLAV  DG+ V P II+KG PF+  T +                         G+PA G+S GVQ+ SW    + + W+   +        M RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:  186 NSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGK-EKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSAPAVADARSG-KLKPPERG 496          
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 8.420e-55
Identity = 122/284 (42.96%), Postives = 157/284 (55.28%), Query Frame = 1
Query:    4 AWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 687
            +WY RF KR++FSIRR+TSVGQK P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+E TG K A I TGG+ EK R+T+ LAV  DG+KV  RII+KG PFV                           +  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGL P+ QPLDR +NK+ KR +R  YT+
Sbjct:  187 SWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGK-EKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTA 468          
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.810e-53
Identity = 121/278 (43.53%), Postives = 153/278 (55.04%), Query Frame = 1
Query:    7 WYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVR 672
            WY+ F +RH FSIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G K A I+TGG+ EK R+T  LAV  DG KV  RII+KG PF+                             FGYP  G+   VQ+ SWCD  +   W+++ +  RP  GS  + QR S+LVLDDFRCHR E F K L     T V+++ GGLTP+ QPLDR +NKE KR +R
Sbjct:  103 WYHCFRERHGFSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGK-EKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIK-QRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMR 378          
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.340e-51
Identity = 122/297 (41.08%), Postives = 159/297 (53.54%), Query Frame = 1
Query:    1 NAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV---------------------------------GGTNNFGYPA----GGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 687
            N+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I+TGGE EK R+T+VLAV  DG+KV PRII+KG PF+                                 GG  N   P     G   +   + SW D  + + W+   +  RP + S   QRP +LVLDDF+CH++E F   L   AKT V+ + GGLT + QPLDR +NK+ KR +R +YT+
Sbjct:  214 NSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGE-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRGAKT-VIFIPGGLTSLLQPLDRMLNKQMKRLLRGKYTA 508          
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.930e-51
Identity = 121/309 (39.16%), Postives = 155/309 (50.16%), Query Frame = 1
Query:    4 AWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGET-------------------------EKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 687
            +WY RF KR++FSIRR+TSVG + P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I TG                            EK R+T+ LAV  DG KV  RII+KG PFV                           +  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+
Sbjct:  120 SWYQRFRKRNKFSIRRRTSVGIRLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTA 427          
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 2.850e-50
Identity = 118/285 (41.40%), Postives = 155/285 (54.39%), Query Frame = 1
Query:    7 WYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI 693
            WY+RF +RH  SIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G K A I+TGG+ EK R+T+ LAV  DG KV  RII+KG PF+                            NFGYP  G+S GVQ+ SW D  +   W+++ +  RP  GS  + QR S+LVLDDFR +              T V+++ GGLTP+ QPLDR ++KE KR +R RYT ++
Sbjct:  207 WYHRFRERHGLSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGK-EKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIK-QRHSILVLDDFRTN--------------TTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQYM 475          
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 8.820e-46
Identity = 99/253 (39.13%), Postives = 133/253 (52.57%), Query Frame = 1
Query:   97 AWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVG------------------------GTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 690
            AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +T++EKTG K A I TGG+ EK R+T+ LAV GD +KV  R I+KG P +                           +  GYP GG+S GVQ+ SWCD  +   W+   +  RP + S   QRP +LVLDDF+CH+++ F  +L   A T+V+ + GGLTP+ QPLDR +NK  KR +R  YT++
Sbjct:    2 AWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGK-EKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUK2_9PHAE7.310e-6342.30DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE7.220e-6142.62DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE1.550e-5941.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTG5_9PHAE2.300e-5540.89DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE8.420e-5542.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K583_9PHAE1.810e-5343.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KRZ8_9PHAE1.340e-5141.08DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE1.930e-5139.16DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE2.850e-5041.40DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FXD3_ECTSI8.820e-4639.13DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:175686..177229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXD3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size851
Max annot lvl2759|Eukaryota
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
Exons4
Evalue9.43e-44
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
DescriptionDNA binding
Cds size588
COG categoryCH
BRITEko00000,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.63.2prot_P-littoralis_Contig176.63.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 175965..177140 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789847.272882-UTR-P-littoralis_Contig176:175685..1758381680789847.272882-UTR-P-littoralis_Contig176:175685..175838Pylaiella littoralis U1_48UTRP-littoralis_Contig176 175686..175838 +
1680789847.284872-UTR-P-littoralis_Contig176:175943..1759641680789847.284872-UTR-P-littoralis_Contig176:175943..175964Pylaiella littoralis U1_48UTRP-littoralis_Contig176 175944..175964 +
1680789847.3342905-UTR-P-littoralis_Contig176:177140..1772291680789847.3342905-UTR-P-littoralis_Contig176:177140..177229Pylaiella littoralis U1_48UTRP-littoralis_Contig176 177141..177229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789847.2958045-CDS-P-littoralis_Contig176:175964..1760601680789847.2958045-CDS-P-littoralis_Contig176:175964..176060Pylaiella littoralis U1_48CDSP-littoralis_Contig176 175965..176060 +
1680789847.3099296-CDS-P-littoralis_Contig176:176579..1766831680789847.3099296-CDS-P-littoralis_Contig176:176579..176683Pylaiella littoralis U1_48CDSP-littoralis_Contig176 176580..176683 +
1680789847.3234885-CDS-P-littoralis_Contig176:176752..1771401680789847.3234885-CDS-P-littoralis_Contig176:176752..177140Pylaiella littoralis U1_48CDSP-littoralis_Contig176 176753..177140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.63.2

>prot_P-littoralis_Contig176.63.2 ID=prot_P-littoralis_Contig176.63.2|Name=mRNA_P-littoralis_Contig176.63.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=196bp
MDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKV
RPRIIYKGNPFVGGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMR
RPGSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVC
QPLDRNINKEFKRGVRARYTSWIRDNYGRSGQKVTAPSRGWSRRG*
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mRNA from alignment at P-littoralis_Contig176:175686..177229+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.63.2 ID=mRNA_P-littoralis_Contig176.63.2|Name=mRNA_P-littoralis_Contig176.63.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1544bp|location=Sequence derived from alignment at P-littoralis_Contig176:175686..177229+ (Pylaiella littoralis U1_48)
AACGCCTGGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACG CAAGACGAGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGT GGGCATTCATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAA GCCGTTCTCTTGGAGAGGGCAGCCCAGGCAGCGAAGGACGGAGGGACCGT TGAGATCGAGATGGACGTCATCGCAACTGCGGAGGAACTTCTGGCTGTTC AGGGCAAGATCTTCGCCCTTCTGTACAACATGGACCAGACCCCGATCCAG GCTGAGATGCCGCCGGACACCACGGTGGAGAAGACTGGTACGAAGAGCGC TTGCATCACGACAGGAGGTGAGACGGTGTACTAAAGGTATTTCGATTGTT GAAATTCAGTTCAAACCAACATGGTGGAGATTTTCTGACGATGGAACAAG CGGGGAATTACAAATTTGCCGACGGCGGAAAAACGGGGAATTATAATATT TTGCATTGCTTCTGCCGTCACGTGCACGCTTTCGTTCTTCTATTGCCTGC AAGTACGGTACGTACTGCTGTATCGCCTGTCCCTTCGAACTACCGGTACA CAGCGATGAAATTATTCATATGGTATTCCGCTGAAGTATTTTTTTTAATA TACATATGTTTTGGGGGCAATATATATTTTACCGTATACACCGGAGTTTG TTTTTATTTTACTTTTTATGTTGTGGTAGGCATTACACCCCAGGAGTTAA AGGTGTGTGTTTGTTTTTTATTATTATTTATTTTTTGTTTGTTGTGGCAG GCAATACGATTAATAATTGTACTGCTTTGCGGAGTATTTTCTTTTAACAC AATTTCCTTTGTTTGCATACGCCCCAATTTTCGCACCAGGCAAGGAGAAG CTGCGGTACACCGTGGTGCTAGCTGTCCGGGGTGATGGACAGAAGGTGCG GCCGCGCATCATCTACAAGGGGAACCCTTTTGTCGGGGGTACCAACAAGT CAGGCTCAGCCAAGAAGCCTGGCAAGAACAGCCTGTCGTACGAGCACCTC CCAGACAAGCGGACGAGCTTCGGCTACCCGGCTGGCGGCATCAGCCTCGG GGTGCAGAAGTCGTCGTGGTGCGACGGCACCCAGTCCGACGAGTGGGTAA CCCAGGACTTCATGCGCCGCCCAGGGTCTACCTCCAGAGATCAGCGTCCC AGCGTTCTCGTGCTCGACGACTTCAGGTGCCACCGGGAAGAGAGGTTCCA AAAGAAGCTAATGGACCTGGCCAAGACGCTGGTGGTGATGCTTGGTGGAG GGCTGACCCCGGTGTGCCAGCCGCTCGACCGGAACATCAACAAGGAGTTC AAGCGAGGTGTTCGGGCCAGGTACACCAGCTGGATCCGGGACAACTACGG GCGCTCGGGGCAGAAGGTGACCGCGCCGAGCAGGGGCTGGTCGCGACGTG GGTAAAGGAGGTGTGGGACAACATCTCGGAGCGGACCATCCGCTCGTGCT TCAAGGTCTGCGGTCTCACCCTCAACCTCGACGGAAGCGAGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig176:175686..177229+

>mRNA_P-littoralis_Contig176.63.2 ID=mRNA_P-littoralis_Contig176.63.2|Name=mRNA_P-littoralis_Contig176.63.2|organism=Pylaiella littoralis U1_48|type=CDS|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig176:175686..177229+ (Pylaiella littoralis U1_48)
ATGGACCAGACCCCGATCCAGGCTGAGATGCCGCCGGACACCACGGTGGA
GAAGACTGGTACGAAGAGCGCTTGCATCACGACAGGAGGTGAGACGGAGA
AGCTGCGGTACACCGTGGTGCTAGCTGTCCGGGGTGATGGACAGAAGGTG
CGGCCGCGCATCATCTACAAGGGGAACCCTTTTGTCGGGGGTACCAACAA
CTTCGGCTACCCGGCTGGCGGCATCAGCCTCGGGGTGCAGAAGTCGTCGT
GGTGCGACGGCACCCAGTCCGACGAGTGGGTAACCCAGGACTTCATGCGC
CGCCCAGGGTCTACCTCCAGAGATCAGCGTCCCAGCGTTCTCGTGCTCGA
CGACTTCAGGTGCCACCGGGAAGAGAGGTTCCAAAAGAAGCTAATGGACC
TGGCCAAGACGCTGGTGGTGATGCTTGGTGGAGGGCTGACCCCGGTGTGC
CAGCCGCTCGACCGGAACATCAACAAGGAGTTCAAGCGAGGTGTTCGGGC
CAGGTACACCAGCTGGATCCGGGACAACTACGGGCGCTCGGGGCAGAAGG
TGACCGCGCCGAGCAGGGGCTGGTCGCGACGTGGGTAA
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