mRNA_P-littoralis_Contig175.88.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig175.88.1
Unique NamemRNA_P-littoralis_Contig175.88.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig175.88.1 vs. uniprot
Match: A0A6H5KX03_9PHAE (Ribosomal RNA-processing protein 8 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX03_9PHAE)

HSP 1 Score: 432 bits (1110), Expect = 2.350e-136
Identity = 216/227 (95.15%), Postives = 223/227 (98.24%), Query Frame = 1 
Query: 2116 GSGAPRLSELQKRMRRKFEGAQFRMINETLYTSESGASLAKFKKEPELFDVYHRGFREQVEKWPVHPLDIIIDWLGKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIQDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDTRQMDRTNKMFLLAEFQKSKRKPEKGVEFEAKACIYKRR 2796
            GSGAPRLSELQKRMR+K EGAQFRMINETLYTSESGASLAKFK+EPELFDVYHRGFREQVEKWPVHPLDIIIDWL KYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPI+DASVHVA+FCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDT QMDR+NKMFLLAEF+KS RKPE+GVEFEAKACIYKRR
Sbjct:  303 GSGAPRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAIFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDTMQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 529
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BLAST of mRNA_P-littoralis_Contig175.88.1 vs. uniprot
Match: D7FVW1_ECTSI (Ribosomal RNA-processing protein 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW1_ECTSI)

HSP 1 Score: 416 bits (1070), Expect = 1.870e-133
Identity = 209/220 (95.00%), Postives = 216/220 (98.18%), Query Frame = 1 
Query: 2116 GSGAPRLSELQKRMRRKFEGAQFRMINETLYTSESGASLAKFKKEPELFDVYHRGFREQVEKWPVHPLDIIIDWLGKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIQDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDTRQMDRTNKMFLLAEFQKSKRKPEKGVEFEAK 2775
            GSGAPRLSELQKRMR+K EGAQFRMINETLYTSESG SLAKFK+EPELFDVYHRGFREQVEKWPVHPLDIIIDWL KYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPI+DASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVT+RLGFDTRQMDR+NKMFLLAEF+KS RKPE+GVEFEAK
Sbjct:   45 GSGAPRLSELQKRMRQKLEGAQFRMINETLYTSESGVSLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTRRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAK 264
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BLAST of mRNA_P-littoralis_Contig175.88.1 vs. uniprot
Match: A0A836C7W6_9STRA (Ribosomal RNA-processing protein 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7W6_9STRA)

HSP 1 Score: 327 bits (839), Expect = 2.820e-101
Identity = 158/221 (71.49%), Postives = 185/221 (83.71%), Query Frame = 1 
Query: 2134 LSELQKRMRRKFEGAQFRMINETLYTSESGASLAKFKKEPELFDVYHRGFREQVEKWPVHPLDIIIDWLGKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIQDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDTRQMDRTNKMFLLAEFQKSKRKPEKGVEFEAKACIYKRR 2796
            +S+LQ+ M+RK EGA+FRM+NE LYT  S  S ++F +EP+LFD+YHRGFREQVEKWPVHPLD+II WL KYPKA +ADFGCGEARLA TVPN+ HSFDL +PN  VTACDMA+VP+ DASVH+AVFCLSLMGTNLADF+REA RVL PGGLVKVAEVRSRFEG  GG+  FL V +RLGFD RQ D T+ MF++ EF+K+ R PE  VEF AKAC+YKRR
Sbjct:    1 MSKLQEAMKRKLEGARFRMLNEDLYTKHSTLSFSQFSEEPDLFDIYHRGFREQVEKWPVHPLDVIIRWLKKYPKAVIADFGCGEARLAQTVPNRCHSFDLCAPNAHVTACDMAHVPLPDASVHIAVFCLSLMGTNLADFVREARRVLKPGGLVKVAEVRSRFEGAPGGLNAFLGVMRRLGFDQRQCDNTSTMFVMMEFKKASRAPEADVEFTAKACVYKRR 221
[Close]
BLAST of mRNA_P-littoralis_Contig175.88.1 vs. uniprot
Match: A0A024G7I7_9STRA (Ribosomal RNA-processing protein 8 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G7I7_9STRA)

HSP 1 Score: 269 bits (688), Expect = 7.020e-79
Identity = 125/222 (56.31%), Postives = 174/222 (78.38%), Query Frame = 1 
Query: 2134 LSELQKRMRRKFEGAQFRMINETLYTSESGASLAKFKKEPELFDVYHRGFREQVEKWPVHPLDIIIDWLGKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIQDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRTNKMFLLAEFQKSKRKPEKGVEFEAKACIYKRR 2796
            LS+LQ+ MR++ +G++FRM+NE LYT     +   F+ +PELFD+YH+GFREQV KWP++PLDI ID++ K+P A VADFGCGEARLA +VPN+VHSFDLV+PN  V AC++A+VP+   S+ +A++CL+LMGT + ++LREAHRV+  GG++K+AEV+SRFE ++ GG++ F+   ++LGFD ++ D  NKMF+L EFQKS RK +  V  E KAC YKRR
Sbjct:   56 LSKLQQAMRKRLDGSRFRMLNEELYTKTGDDAFQTFQDDPELFDIYHQGFREQVTKWPINPLDIFIDYIKKHPNAVVADFGCGEARLAQSVPNRVHSFDLVAPNDHVVACNIAHVPLNSKSIDIAIYCLALMGTTIPEYLREAHRVMKAGGILKIAEVKSRFETKQLGGIQGFISQLRKLGFDYQEKDERNKMFVLLEFQKSNRKKDTNVRIELKACEYKRR 277
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BLAST of mRNA_P-littoralis_Contig175.88.1 vs. uniprot
Match: A0A6A3U140_9STRA (Ribosomal RNA-processing protein 8 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U140_9STRA)

HSP 1 Score: 268 bits (686), Expect = 1.740e-78
Identity = 130/225 (57.78%), Postives = 176/225 (78.22%), Query Frame = 1 
Query: 2125 APRLSELQKRMRRKFEGAQFRMINETLYTSESGASLAKFKKEPELFDVYHRGFREQVEKWPVHPLDIIIDWLGKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIQDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRTNKMFLLAEFQKSKRKPEKGVEFEAKACIYKRR 2796
            A RL+E    MRRK +G +FRM+NE LYT+  GA+ + F+ +PELFDVYH+GFRE  +KWP +PLD  ID++ ++PKA VADFGCG+ARLA +VPNKVHSFDLVS  P VTAC++A+VP++D++V + V+CL+LMGT++ +++RE +RVL PGG++KVAEV+SRFE E  GG+E F++  +++GFD +  D  NKMF+L EF KS RKP+K    E KAC YKRR
Sbjct:   65 AERLAE----MRRKIDGGKFRMLNEQLYTTTGGAAFSTFQSDPELFDVYHQGFREMADKWPTNPLDTFIDYVKRHPKAVVADFGCGDARLAESVPNKVHSFDLVSRKPHVTACNIADVPLKDSTVDIGVYCLALMGTSVREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIEGFVQTLRKMGFDCKHKDERNKMFVLFEFVKSSRKPQKVDPIEFKACEYKRR 285
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BLAST of mRNA_P-littoralis_Contig175.88.1 vs. uniprot
Match: A0A8K1C374_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C374_PYTOL)

HSP 1 Score: 267 bits (682), Expect = 6.160e-78
Identity = 133/229 (58.08%), Postives = 171/229 (74.67%), Query Frame = 1 
Query: 2113 GGSGAPRLSELQKRMRRKFEGAQFRMINETLYTSESGASLAKFKKEPELFDVYHRGFREQVEKWPVHPLDIIIDWLGKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIQDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRTNKMFLLAEFQKSKRKPEKGVEFEAKACIYKRR 2796
            GG     LS++Q+ MRR+ +G +FRM+NE LYTS    +   F+ +PELFDVYH+GFREQ EKWPV+PLD  ID++ K+PKA VADFGCG+ARLA +V NKVHSFDLVS  P VTAC++ANVP+ D S+ +AV+CL+LMGT++ +++ E +RVL P G++KVAEV+SRFE E  GG+  F+   KR+GFD +  D  NKMF L EF K+ RKPE GV  E K C YKRR
Sbjct:   56 GGKKLTGLSKMQEEMRRRLDGGKFRMLNEQLYTSTGKEAFKTFQSDPELFDVYHQGFREQAEKWPVNPLDTFIDYVKKHPKAIVADFGCGDARLAESVKNKVHSFDLVSRKPQVTACNIANVPLPDKSIDIAVYCLALMGTSIREYVLEVYRVLKPKGILKVAEVKSRFETEGLGGIAGFVAAMKRMGFDLQHKDEANKMFALFEFVKTPRKPEDGVLIEFKPCEYKRR 284
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BLAST of mRNA_P-littoralis_Contig175.88.1 vs. uniprot
Match: A0A1V9ZZU1_9STRA (Ribosomal RNA-processing protein 8 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZU1_9STRA)

HSP 1 Score: 262 bits (669), Expect = 1.650e-76
Identity = 127/221 (57.47%), Postives = 167/221 (75.57%), Query Frame = 1 
Query: 2134 LSELQKRMRRKFEGAQFRMINETLYTSESGASLAKFKKEPELFDVYHRGFREQVEKWPVHPLDIIIDWLGKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIQDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDTRQMDRTNKMFLLAEFQKSKRKPEKGVEFEAKACIYKRR 2796
            LS +Q++M+R+ EG +FRM+NE LYT+   A+  +F++EPELFD YH GFRE  EKWPV+PLD  I ++  +PKA VADFGCG+ARL A+VPNKVHSFDLVS N  VTAC++ANVP++D S+ +AV+CL+LMGT + +FL EA RVL P G++K+AEV+SR E    G+  F++  K LG+D RQ D  NKMF+  EF K+KR+P+  V  E KAC YKRR
Sbjct:   36 LSAMQEQMKRRLEGGKFRMLNEQLYTTTGTAAFEEFQREPELFDTYHEGFREMAEKWPVNPLDGFIQYVKAHPKAIVADFGCGDARLGASVPNKVHSFDLVSRNKNVTACNIANVPLKDESIDIAVYCLALMGTTVPEFLLEARRVLKPNGVLKIAEVKSRMETPSLGIAGFVKKVKDLGYDLRQKDENNKMFVTFEFVKTKREPKPNVTIELKACEYKRR 256
[Close]
BLAST of mRNA_P-littoralis_Contig175.88.1 vs. uniprot
Match: D0N5P9_PHYIT (Ribosomal RNA-processing protein 8 n=4 Tax=Phytophthora TaxID=4783 RepID=D0N5P9_PHYIT)

HSP 1 Score: 263 bits (671), Expect = 1.960e-76
Identity = 127/225 (56.44%), Postives = 174/225 (77.33%), Query Frame = 1 
Query: 2125 APRLSELQKRMRRKFEGAQFRMINETLYTSESGASLAKFKKEPELFDVYHRGFREQVEKWPVHPLDIIIDWLGKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIQDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRTNKMFLLAEFQKSKRKPEKGVEFEAKACIYKRR 2796
            A RL+E    MRRK +G +FRM+NE LYT+    + + F+ +PELFDVYH+GFRE  +KWP +PLD  ID++ ++PKA VADFGCG+ARLA +VPNKVHSFDLVS  P+VTAC++A+VP++D+SV +AV+CL+LMGT++ +++RE +RVL PGG++KVAEV+SRFE E  GG++ F++  +++GFD +  D  NKMF+L E  KS RKP+     E KAC YKRR
Sbjct:   61 AERLAE----MRRKIDGGKFRMLNEQLYTTTGDDAYSTFQDDPELFDVYHQGFREMADKWPTNPLDTFIDYVKRHPKAVVADFGCGDARLAESVPNKVHSFDLVSRKPIVTACNIADVPLKDSSVDIAVYCLALMGTSVREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIDGFVQTLRKMGFDCKHKDERNKMFVLFELVKSTRKPQNVAPIEFKACEYKRR 281
[Close]
BLAST of mRNA_P-littoralis_Contig175.88.1 vs. uniprot
Match: A0A0W8D147_PHYNI (Ribosomal RNA-processing protein 8 n=10 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D147_PHYNI)

HSP 1 Score: 262 bits (670), Expect = 2.460e-76
Identity = 127/225 (56.44%), Postives = 174/225 (77.33%), Query Frame = 1 
Query: 2125 APRLSELQKRMRRKFEGAQFRMINETLYTSESGASLAKFKKEPELFDVYHRGFREQVEKWPVHPLDIIIDWLGKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIQDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRTNKMFLLAEFQKSKRKPEKGVEFEAKACIYKRR 2796
            A RL+E    MRRK +G +FRM+NE LYT+    + + F+ +PELFDVYH+GFRE  +KWP +PLD  ID++ ++PKA VADFGCG+ARLA +VPNKVHSFDLVS  P+VTAC++A+VP++D+SV + V+CL+LMGT++ +++RE +RVL PGG++KVAEV+SRFE E  GG+E F++  +++GFD +  D  NKMF+L EF KS R+P+     E KAC YKRR
Sbjct:   58 AERLAE----MRRKIDGGKFRMLNEQLYTTTGDDAFSTFQDDPELFDVYHQGFREMADKWPTNPLDTFIDFVKRHPKAVVADFGCGDARLAESVPNKVHSFDLVSRKPIVTACNIADVPLKDSSVDIGVYCLALMGTSVREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIEGFVQTLRKMGFDCKHKDERNKMFVLFEFVKSTRRPQNVGPIEFKACEYKRR 278
[Close]
BLAST of mRNA_P-littoralis_Contig175.88.1 vs. uniprot
Match: H3G5K6_PHYRM (Ribosomal RNA-processing protein 8 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5K6_PHYRM)

HSP 1 Score: 259 bits (662), Expect = 5.300e-76
Identity = 127/222 (57.21%), Postives = 169/222 (76.13%), Query Frame = 1 
Query: 2155 MRRKFEGAQFRMINETLYTSESGASLAKFKKEPELFDVYHRGFREQVEKWPVHPLDIIIDW-------LGKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIQDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRTNKMFLLAEFQKSKRKPEKGVEFEAKACIYKRR 2796
            MRRK +G +FRM+NE LYTS  G + + F+++PELFDVYH+GFREQ +KWP +PLD  ID+       L ++PKA VADFGCG+ARLA +VPN VHSFDLVS  P VTAC++A+VP++DASV + V+CL+LMGT++ +++RE +RVL PGG++KVAEV+SRFE E  GG+  F+++  ++GFD +  D  NKMF+L EF KS RKP+     E KAC YKRR
Sbjct:    2 MRRKLDGGKFRMLNEQLYTSTGGDAFSTFQEDPELFDVYHQGFREQADKWPTNPLDTFIDYVKCVADALRRHPKAVVADFGCGDARLAESVPNTVHSFDLVSRKPHVTACNIADVPLKDASVDIGVYCLALMGTSIREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIVGFVQILSKMGFDCKSKDERNKMFVLFEFVKSSRKPQNVRPVELKACEYKRR 223
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig175.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX03_9PHAE2.350e-13695.15Ribosomal RNA-processing protein 8 n=1 Tax=Ectocar... [more]
D7FVW1_ECTSI1.870e-13395.00Ribosomal RNA-processing protein 8 n=1 Tax=Ectocar... [more]
A0A836C7W6_9STRA2.820e-10171.49Ribosomal RNA-processing protein 8 n=1 Tax=Tribone... [more]
A0A024G7I7_9STRA7.020e-7956.31Ribosomal RNA-processing protein 8 n=2 Tax=Albugo ... [more]
A0A6A3U140_9STRA1.740e-7857.78Ribosomal RNA-processing protein 8 n=4 Tax=Phytoph... [more]
A0A8K1C374_PYTOL6.160e-7858.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9ZZU1_9STRA1.650e-7657.47Ribosomal RNA-processing protein 8 n=1 Tax=Thraust... [more]
D0N5P9_PHYIT1.960e-7656.44Ribosomal RNA-processing protein 8 n=4 Tax=Phytoph... [more]
A0A0W8D147_PHYNI2.460e-7656.44Ribosomal RNA-processing protein 8 n=10 Tax=Phytop... [more]
H3G5K6_PHYRM5.300e-7657.21Ribosomal RNA-processing protein 8 n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig175contigP-littoralis_Contig175:431965..438261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVW1
Preferred nameRRP8
PFAMsMethyltransf_8
Model size3287
Max annot lvl2759|Eukaryota
KEGG koko:K10260,ko:K14850,ko:K17478
KEGG Pathwayko04120,map04120
KEGG ModuleM00387
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000183,GO:0000785,GO:0000792,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005677,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006996,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008219,GO:0008649,GO:0008757,GO:0009267,GO:0009451,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0012501,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016433,GO:0016458,GO:0016740,GO:0016741,GO:0017053,GO:0019219,GO:0019222,GO:0022613,GO:0023052,GO:0030684,GO:0030686,GO:0030687,GO:0030688,GO:0031167,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0033553,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0035064,GO:0035556,GO:0040029,GO:0042149,GO:0042254,GO:0042273,GO:0042393,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045814,GO:0045892,GO:0045934,GO:0046015,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0071156,GO:0071158,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0072331,GO:0072332,GO:0080090,GO:0090068,GO:0090304,GO:0090568,GO:0097190,GO:0097193,GO:0140030,GO:0140034,GO:0140098,GO:0140102,GO:1901360,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons5
Evalue4.04e-142
EggNOG OGsKOG3045@1|root,KOG3045@2759|Eukaryota
EC2.1.1.287
Descriptionchromatin silencing at rDNA
Cds size1455
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009,ko03110,ko04121,ko04131,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig175.88.1prot_P-littoralis_Contig175.88.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig175 432453..436917 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789844.764424-UTR-P-littoralis_Contig175:431964..4324521680789844.764424-UTR-P-littoralis_Contig175:431964..432452Pylaiella littoralis U1_48UTRP-littoralis_Contig175 431965..432452 -
1680789844.8339376-UTR-P-littoralis_Contig175:436917..4382611680789844.8339376-UTR-P-littoralis_Contig175:436917..438261Pylaiella littoralis U1_48UTRP-littoralis_Contig175 436918..438261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789844.778881-CDS-P-littoralis_Contig175:432452..4324761680789844.778881-CDS-P-littoralis_Contig175:432452..432476Pylaiella littoralis U1_48CDSP-littoralis_Contig175 432453..432476 -
1680789844.7907114-CDS-P-littoralis_Contig175:433281..4334611680789844.7907114-CDS-P-littoralis_Contig175:433281..433461Pylaiella littoralis U1_48CDSP-littoralis_Contig175 433282..433461 -
1680789844.800032-CDS-P-littoralis_Contig175:434448..4346281680789844.800032-CDS-P-littoralis_Contig175:434448..434628Pylaiella littoralis U1_48CDSP-littoralis_Contig175 434449..434628 -
1680789844.8099995-CDS-P-littoralis_Contig175:435601..4357481680789844.8099995-CDS-P-littoralis_Contig175:435601..435748Pylaiella littoralis U1_48CDSP-littoralis_Contig175 435602..435748 -
1680789844.8206701-CDS-P-littoralis_Contig175:435993..4369171680789844.8206701-CDS-P-littoralis_Contig175:435993..436917Pylaiella littoralis U1_48CDSP-littoralis_Contig175 435994..436917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig175.88.1

>prot_P-littoralis_Contig175.88.1 ID=prot_P-littoralis_Contig175.88.1|Name=mRNA_P-littoralis_Contig175.88.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=485bp
MDVEGPGVSAEPAAQHSSNIRKRSKHKRFAAGGKTGDRAGRSVEETRGGE
AMLSDTPAPTSRAAEREQQGGNSNRSYVNSASARSPQQQQQQQQQKPLSS
SSKAVDANPLSDGSGERGGKKSKKRRRKEAALAAAAEAAIKQQPPPSPAT
PSATAATEDSANNSNNDNNNSSSGNSHCAKRAKKKKNKNMAGNTNNTAME
NKSMTVMVGKPQKVGSLSAPAPAPTPVAATSSGGSGSGGRRTGGDQRGAA
AAAVGMGGSGAPRLSELQKRMRRKFEGAQFRMINETLYTSESGASLAKFK
KEPELFDVYHRGFREQVEKWPVHPLDIIIDWLGKYPKARVADFGCGEARL
AATVPNKVHSFDLVSPNPLVTACDMANVPIQDASVHVAVFCLSLMGTNLA
DFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDTRQMD
RTNKMFLLAEFQKSKRKPEKGVEFEAKACIYKRR*
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mRNA from alignment at P-littoralis_Contig175:431965..438261-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig175.88.1 ID=mRNA_P-littoralis_Contig175.88.1|Name=mRNA_P-littoralis_Contig175.88.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6297bp|location=Sequence derived from alignment at P-littoralis_Contig175:431965..438261- (Pylaiella littoralis U1_48)
TTGGTCTTGAGTCATGAACAATGAACTACACTACCAATCAAGACACTCAC
CGCTCCTCTGCGACGATAAGCCTCGGTGTTGATTGCCCAGAGCGCCGCGC
TAAACCTAGGGTTATGCATGGCCACACTGATGGGATTCGTGGCAGGGACC
GGCGGGTTGAAGCCAGTCTCTCCAAAGAGAAATTTGATGTGCTTCCTCTG
GTACTCGTTGAGCGCGATTTCATCTGGGGTGAGGCTTAATTAACGTGTTC
GGGTCTGCCCAGAGATCCAAGATTTTCTCGCGGTCCACGGTCAGCTTGTC
TAGCACTGACTGCTGCTGCTGCTGCTGCTGCTCTGCGTTCCTCTCTTCTG
ACATGTATGTGCAGTAGTATGCTGTGTGCTGGGTTGGTGTGCTACTGCTC
CTGTGCTCCTGACTCACTACTTGATAACGGGTTGCGTGTTTGTACCTTCC
TATTTCGCGTGCGTTGTGTGTGGGTGAGAGTGAGTGTTGCGCTGTTGTGT
GTTGTGTGTTGTCATCCCTTTCTTTGACAACTAAAAAACGTGTGTTCGGT
GTTCGGTGTTCGGTGTTCGGTGCGTTGCATTGCTCGGCGGAATACTCACC
GTCACATGATCGTACAAAAAGTTCACCCTTCAATGTCTTCAGTTTGTCGG
TTGAAAGTCGGATAGATAATCGGGAAATCATCACATTAGAATTTTTGACA
AACGAAAAATGACGCAGGAAGAAAGTAAATACAATCACGTGTGCCGCAGG
ACACGAGCTGACGCCGCAAAACAAAGACAGCAAGTAACTACCTCGCCGTC
TTATTCGACAAACTACTCTAAAAAATACCATTATCCTGCACGAATGGATC
ACGTCGTCGGTAGGCCCGTGTCGGAGCAGATACCAGTACACGAGAAGAGC
GAATGGGTACGTGTGTATGGGTAACGACTTGCGATACTAAACAATGTGCA
TTGTGAGAAGCGGAACACTTGGCACCATGGGGTATGCTGACGGCGGAGCA
AGTTTGGGGAAAGGAAGCGTATAGGCGTTGACCAGAGACCAAGAGTCGGT
ATCTTCCTACGAGACTGTCACTTTTGAACCCGTACCATACACGCCTTCTT
CTGTAAACCCAGTGTTGGAAGGCGTCGCTCCGTCACAGTCATAGTCCGTC
GTCGTCCGTCGCAATCAACTGAGGACGAGGGAGGAGAACGTGTCACTCAC
TACTCTCTTCTCTGCTGCTGCGGGCGCAGTGTTGACAGCTGCTGCGTAAG
GGTGCACACAGCCTACCTTCCCAGGGCCCCCTATCAAACCAACCCTTTTC
CACGATTGGTCTCGCACGTAGTTTTTTTATCGCTCCCAAAAAAGATGGAT
GTCGAAGGCCCTGGAGTATCAGCCGAACCCGCAGCCCAACACAGCAGTAA
CATACGTAAGCGCTCCAAGCATAAGAGGTTTGCGGCTGGCGGCAAGACAG
GCGACCGTGCAGGGAGAAGTGTGGAGGAGACGAGGGGTGGCGAAGCCATG
CTGAGCGATACACCTGCGCCAACAAGCCGTGCTGCTGAACGAGAGCAGCA
AGGGGGCAACAGCAACAGGAGCTACGTCAATTCCGCTTCAGCGAGGAGCC
CGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAACCCTTGAGCAGCTCTTCC
AAAGCAGTCGATGCGAATCCTCTCTCTGATGGTAGTGGAGAGCGCGGTGG
CAAGAAGAGCAAAAAACGCCGTCGAAAAGAGGCTGCTTTGGCCGCGGCCG
CAGAGGCAGCAATTAAGCAACAACCCCCGCCATCACCGGCAACTCCTAGC
GCCACCGCCGCAACGGAGGACTCCGCCAACAACAGCAACAACGACAATAA
CAACAGCAGTAGCGGCAATAGTCATTGTGCCAAGAGAGCCAAGAAGAAGA
AGAACAAAAATATGGCCGGAAACACCAACAACACTGCCATGGAAAACAAA
AGCATGACTGTGATGGTGGGCAAGCCGCAAAAGGTCGGTTCGCTGTCAGC
ACCAGCACCAGCACCAACGCCTGTTGCGGCTACTTCAAGCGGCGGCAGCG
GCAGCGGCGGTCGGAGGACGGGAGGCGATCAGAGGGGTGCGGCGGCGGCG
GCCGTGGGGATGGGAGGATCGGGTGCTCCCCGGCTATCAGAGCTGCAAAA
GCGCATGCGGCGGAAGTTCGAGGGCGCGCAGTTCCGCATGATCAATGAGA
CGCTCTACACTTCGGAGAGCGGAGCGTCGTTAGCCAAGTTCAAGAAGGAG
CCGGAGCTTTTCGACGTGGTTTGTGCTTGTGTCTCTGTGTGTACAAGTAC
AAGTATATGAGAGAGAGAGAGGGAGGAAGAGAGAGAGAAAGGCGCGTAGT
CTCTGTCCAACAGCAAGTCTTCCCTCGCTGGATAGATGCGAATGGAATCC
GCCTGCCCCCGCCCACCTCATCCTACCCGCCCTTATCTTGGCACGGTACG
CAGATTTGCCCGTTGCTGCCCACCCCTGCCTTCGCGTCCACACCCACATG
TTCATGCCAACAGTACCACCGAGGCTTTCGAGAGCAGGTGGAAAAGTGGC
CGGTGCACCCCCTGGACATCATCATCGACTGGCTGGGGAAGTACCCCAAA
GCGCGAGTGGCGGACTTCGGCTGCGGAGAGGCTCGTCTTGCGGCCACGGT
GCCCAATAAGGTACACATACAAGTATACATTACAAACCGAGAAGCGGCAC
TTCGGATACACGTGTACGCCAAGGAATACTAATATTTCGTTTGCTTGCCC
AACGATTCTGTAAACACAAAACATAAAACTACCTGCTCTGAATGGCTCTT
TGTTTTGATTTTCCAGACGAGGGTTTTACGGTTCACCACCTCCCTCGCTG
TACAAGCCATACTTTTTTCAAGTTCTCCCGAAGAATTTCATCAACCCGTA
CTGTTTTTGTAGTTCTAGGTTCTCGATTGTTTCTCCACCGAAACTTTCCC
TGATAAATTTCATCCCTCCTCTGTCTCTGTTCACTCCTGCAGTAAGAAAC
TTGTCCTCGAAACGTGAGCCCAGTTGGTGAAGGAGCTTCACGGAATCCCT
CAAAAATACGCCGAAACAATTAACACAATACTATAACATGGTTCTCGTTT
CGCCATGGGCTCGTTTCGCCACGGGTTTGGAAAACTTGTCCTCGAAACCT
GAGCCCAGCTGTCAAAGAGAGATTTCGCAGAATCCTTCGAGAATGTTCCC
GAACGATTCCCTACACTGTGTTCTTGTTTTCGCCACGGGCCTTTCGGTCG
ACGGCAAGTTTTCAGGAGGGGATCAACTTTGTGGGCAAGCTGTGTGGGTG
ATCAACTCGCGCGATCCGTTGACGAGGACAGCCCTTACATTAAAATTTTT
TGCTTCGCTTTAAAATTTCCATTCCAGCAAATTTTTTTTTTTGTTTTTTC
TAATTTTCCTACGAAGTACTTCGAAGTACAAATTAAGTTTTTTTATATTT
TTTGGGCTGAAAGTTACTTCGAAGTATTACGGTCATGATACCAAGTTCGT
CTCACCAAACGTTCTCTCGACCTCCCCTTCCCCAATTCGCCGCCGATCCT
TGCTTTCGTCTTGTCGCAAAAACCGAACGGACTACTCTGAAACGAACAAA
AAATAATACGGAACGAAATAAAATCAAGCGCAGGTGCATTCGTTCGACTT
GGTGTCTCCCAACCCGCTGGTAACGGCCTGTGACATGGCCAACGTGCCCA
TCCAGGATGCCTCCGTACACGTCGCCGTCTTCTGCCTCTCTCTCATGGGG
ACAAACCTGGCAGACTTCTTGCGCGAGGCCCACCGGGTGCTTGTCCCGGG
AGGACTTGTGAAGGTGCGTTGTCCATTTTTACGTGTGCGGAGGGGAAGGC
GTGCATTTTTTTTGTTTTTGAAGTGGATGTTCAATGTCATGTTTAATTGG
TTGCATCTATTTTGGGCTTGGTCGCCTCGCCCCTCCCCTTCCCCCCCCAC
CCCCGCGCTTCGTGCAATAATGTGACGAGTATTGAGCGAGTACTCAAAGT
AGTAGTGTCAACATAAAACTATTTTGTTTTCCCCAGCCTCGTTCTACGTA
CCCTACAAGCAATATCGTCAGAGGGAAATTACGTTTTGGGGGAATTCCCG
AAGCAAGATGTGTGTGTGTGTGTCGAAGCTAGCTAGATATGTGTGTTTTC
AGCCCATCTACTCCGCACGCCCATTGACACCTTTTCGAAATATTTGGGCG
CACCAACCGGGGTCACACAGGAGAAAAGTTAGCACCATTTTTTCTTTTTT
TTTGTCGTCCATCTTCTTTCCTCGGTACTTGCTCTCATCTTTGTCTTTTC
CGTTGAGAATATTAAGGCTATTCTTTGGTAATTTTTTTTATAATTTCTAA
AATTTTGTTTAAAAGTTCCAACATATCCAGTAGGTAGAGTGTGCGCTTTG
CAAGCGTGAAGTCAAGAGCTCAAGGCTTTTGCCTGCTCAAACATTTCAAG
TGTTTGGTCATGAGATTGTTGTTAAGTGTATCTAAAAATCATTTGTTGGG
TACATTAACTTGTCGAATGTTGTACGAAGCATGACATTACATGCTCGTGA
CAAAATCGCTATCCGCTGCAAGCTGGGTACTTGAGTTGTTCGAGAAAGAA
AAAAATCATCTGGATCACATACATACGTACGAAGACCGGTTTTGACTGCT
GTGCTGTCGTTCGATTTATTTTTACATAAAAACTTTTTGACGGGTTCAAC
ACAACGACCCGGGTATGTGTCTGTCGACTGGCTGAACATCAAACACCCAA
TATTCTTCGTTCATCAATGTCACACGACTTCTGTGTTCTCCGGATGAAAG
GTGGCCGAGGTCAGGAGCCGTTTTGAGGGAGAGGAGGGTGGTGTGGAACG
GTTTCTGGAGGTGACGAAACGGCTGGGCTTCGACACGAGGCAGATGGACC
GCACGAACAAGATGTTCCTCTTGGCGGAGTTCCAGAAGTCGAAACGGAAG
CCCGAGAAGGGGGTTGAATTCGAGGCAAAGGTATGTAAGCTGGTCAAAAG
ATCGTTGCTTTTTCGGCTGTTATTGGTGGTTCTCGTTTCAGCCTGTCGCT
CAGGATAAGCCCGTGGTCACAAAGACTTGCCGGAAAGAAGGCAGGAAGGA
AGGAAGTTAGGAAAGAAGGAAGGGGTATAGGAATACATGGACTTATGCAA
CATAATGCCACACACGCACACAGGAGCACCGACCGCTCAGAGTGCGGGAT
CTACTACTATTAATAGTCTGGCGACAAAAATCCAGACGACTATATAGAAG
ACGGTGCAAAAAAAATGAAAGGAAAAAGGAACGAAAGCTAAATCGTTGGT
AGGGATGGTATGATGCGACAAGGAGGGCAATCCGAGCAGAGCATATCTGG
CTGACGAAAAAAATCACAGCAGCTGTCACGAGCCACAAAGGTGTAACTGC
CGGTGAGCGCTGCTTGCGCTAGGAAGGCGGGCGTTCATGTTACACCCCCG
CAGGCACTACAGGAATAAATACAGAATGTGCCTTGCCGTGGCGGTACTGC
TGTAGTCAGGGTTGCAACTGCTCCGAGGTTTGAAGGGAACAAGACGTAGC
TGGTGCACGCGGTAGGAGGTGACTTTTCCCTTTTTTCCGTTCGTCGCGGG
CGTTGCTGGCAGCGAGCGGTGAAAGAAGCGCCGGCTATGCACAGCAGGCA
GACGAAGAGTAGCTCTCCTTACGCTCTCAACCTCTCCGGCCGTCGCCAAT
ACGCCTCTCTCTCTCCCCCCCCCCCCCCCCCCCCCCCCGGCGCCCGACAC
TGGTGGTCGACCTCTGCAACGAAATATCTTCACAGGCTTGCATATACAAA
CGGCGATAGGGTCGGCAAGAGCTCCCGGACGTGGGGACCCTGAAGCCGGC
GGGGAGCCTTGCCATGTTTGTCCTGGGGGCGACAACAGCGAACTTTGCCC
ATTTGTATTCCTATATTTGGCGAAATCCCTCCCCTGGTGCCACAAGAGCC
CCTGGGAGGGGGGACTCTGCAATTTTTTGCGGCAAGCGCGGTGGACTCAG
ATAATAGATCATGTGAACAGAAGTGTTTTTTTTCCAACACTTCAAAATTA
TGACTCCGCTTTCACGTGTGGAGCGAAAATCAATGCTCCAGTTCCTCGAC
GCTCTTCAAACTGTGGAAGCCCGAAGTGGACACTCGAAATTAGCATTGCA
AACAGCTTGAGACACCTGTTTTGTTGTTTTTCTCCCTCGAGTGATTATGC
AGCACCCCGGTGATTAGAGGCAGTTCAAACGGCGTAACGTGCACATCAGC
GTTGCACGTCTATAGCGTTCGTTGGGGGTATCATACATTGGCCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig175:431965..438261-

>mRNA_P-littoralis_Contig175.88.1 ID=mRNA_P-littoralis_Contig175.88.1|Name=mRNA_P-littoralis_Contig175.88.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1455bp|location=Sequence derived from alignment at P-littoralis_Contig175:431965..438261- (Pylaiella littoralis U1_48)
ATGGATGTCGAAGGCCCTGGAGTATCAGCCGAACCCGCAGCCCAACACAG
CAGTAACATACGTAAGCGCTCCAAGCATAAGAGGTTTGCGGCTGGCGGCA
AGACAGGCGACCGTGCAGGGAGAAGTGTGGAGGAGACGAGGGGTGGCGAA
GCCATGCTGAGCGATACACCTGCGCCAACAAGCCGTGCTGCTGAACGAGA
GCAGCAAGGGGGCAACAGCAACAGGAGCTACGTCAATTCCGCTTCAGCGA
GGAGCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAACCCTTGAGCAGC
TCTTCCAAAGCAGTCGATGCGAATCCTCTCTCTGATGGTAGTGGAGAGCG
CGGTGGCAAGAAGAGCAAAAAACGCCGTCGAAAAGAGGCTGCTTTGGCCG
CGGCCGCAGAGGCAGCAATTAAGCAACAACCCCCGCCATCACCGGCAACT
CCTAGCGCCACCGCCGCAACGGAGGACTCCGCCAACAACAGCAACAACGA
CAATAACAACAGCAGTAGCGGCAATAGTCATTGTGCCAAGAGAGCCAAGA
AGAAGAAGAACAAAAATATGGCCGGAAACACCAACAACACTGCCATGGAA
AACAAAAGCATGACTGTGATGGTGGGCAAGCCGCAAAAGGTCGGTTCGCT
GTCAGCACCAGCACCAGCACCAACGCCTGTTGCGGCTACTTCAAGCGGCG
GCAGCGGCAGCGGCGGTCGGAGGACGGGAGGCGATCAGAGGGGTGCGGCG
GCGGCGGCCGTGGGGATGGGAGGATCGGGTGCTCCCCGGCTATCAGAGCT
GCAAAAGCGCATGCGGCGGAAGTTCGAGGGCGCGCAGTTCCGCATGATCA
ATGAGACGCTCTACACTTCGGAGAGCGGAGCGTCGTTAGCCAAGTTCAAG
AAGGAGCCGGAGCTTTTCGACGTGTACCACCGAGGCTTTCGAGAGCAGGT
GGAAAAGTGGCCGGTGCACCCCCTGGACATCATCATCGACTGGCTGGGGA
AGTACCCCAAAGCGCGAGTGGCGGACTTCGGCTGCGGAGAGGCTCGTCTT
GCGGCCACGGTGCCCAATAAGGTGCATTCGTTCGACTTGGTGTCTCCCAA
CCCGCTGGTAACGGCCTGTGACATGGCCAACGTGCCCATCCAGGATGCCT
CCGTACACGTCGCCGTCTTCTGCCTCTCTCTCATGGGGACAAACCTGGCA
GACTTCTTGCGCGAGGCCCACCGGGTGCTTGTCCCGGGAGGACTTGTGAA
GGTGGCCGAGGTCAGGAGCCGTTTTGAGGGAGAGGAGGGTGGTGTGGAAC
GGTTTCTGGAGGTGACGAAACGGCTGGGCTTCGACACGAGGCAGATGGAC
CGCACGAACAAGATGTTCCTCTTGGCGGAGTTCCAGAAGTCGAAACGGAA
GCCCGAGAAGGGGGTTGAATTCGAGGCAAAGGCTTGCATATACAAACGGC
GATAG
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