mRNA_P-littoralis_Contig175.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig175.13.1
Unique NamemRNA_P-littoralis_Contig175.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig175.13.1 vs. uniprot
Match: D7FVY5_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY5_ECTSI)

HSP 1 Score: 382 bits (981), Expect = 1.060e-125
Identity = 230/291 (79.04%), Postives = 244/291 (83.85%), Query Frame = 1 
Query:   25 GDVSPHKLVQLFLATPQGPSITVQDVNLATDDVSRLRQAWDAAINPVIDSSGGSTEKPSSDGDPETRATCAGSATIVMQKSIGDD----------IRLVFAGKDLQEGRPLLGYGLGGESTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYAKMQEMDVARQQAIAAKAELRRRVEQEEKNSKMNRLKIQNQWRKIMRLAKVVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELQTLQK 867
            G VSP + VQLFLA+PQG  ITV+DV+L TDDVSRLRQAW A I P  D    S++ P       T A    S+T    K +G+D          IRLVFAGKDLQ GRPLLGYGL  +STVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYAKMQEMD+ARQQAIAAKAELRRR++QEEKNSKMNRLKIQNQWRKIMRLAKV ESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVEL+TLQK
Sbjct:    8 GIVSPGR-VQLFLASPQGQCITVRDVDLCTDDVSRLRQAWGANIYPGADGGCVSSDPPWLSSQ-RTIANKRRSSTD-FDKHVGEDGGGDTIIDADIRLVFAGKDLQRGRPLLGYGLQADSTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYAKMQEMDMARQQAIAAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKV-ESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQK 294
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BLAST of mRNA_P-littoralis_Contig175.13.1 vs. uniprot
Match: A0A6H5L6H2_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H2_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 5.170e-116
Identity = 214/286 (74.83%), Postives = 231/286 (80.77%), Query Frame = 1 
Query:   85 ITVQDVNLATDDVSRLRQAWDAAINPVIDSSGGSTEKPSSDGDPETRATCAGSATIVMQKSIGDD----------IRLVFAGKDLQEGRPLLGYGLGGESTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYAKMQEMDVARQQAIAAKAELRRRVEQEEKNSKMNRLKIQNQWRKIMRLAKV---------------VESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELQTLQK 867
            ITV+DV+L TDDVSRLRQA  A+I P  D    S++ P       TRA    S+T    K++G+D          IRLVFAGKDLQ+GRPLLGYGL  +STVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYAKMQEMD+AR  AIAAKAELRRR+++EEKNSKMNRLKIQNQWRKIMRLAKV               VESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVEL+TLQ+
Sbjct:   15 ITVRDVDLCTDDVSRLRQACGASIYPGADGGCVSSDPPWLSSH-RTRANRRRSSTD-CDKNVGEDGGGDATIDADIRLVFAGKDLQKGRPLLGYGLQADSTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYAKMQEMDMARSGAIAAKAELRRRIDKEEKNSKMNRLKIQNQWRKIMRLAKVTKKRPGGLVLTAQDRVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQR 298
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BLAST of mRNA_P-littoralis_Contig175.13.1 vs. uniprot
Match: A0A835ZEY8_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEY8_9STRA)

HSP 1 Score: 241 bits (614), Expect = 1.660e-71
Identity = 144/196 (73.47%), Postives = 163/196 (83.16%), Query Frame = 1 
Query:  277 DIRLVFAGKDLQEGRPLLGYGLGGESTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYAKMQEMDVARQQAIAAKAELRRRVEQEEKNSKMNRLKIQNQWRKIMRLAKVVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELQTLQ 864
            D  LVFAGK +     L  YGL   ST+HVLGRLRGGAQLGKVVKGRSQVKKK   K K++ +LQAKY KMQE+D AR  A AA+ EL+RR+E EE+NS+ NRLKIQNQWRKIMRLAKV ESLR+DIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQ+QTALRAHL  MD LIDLQD+RLL+LE+ FE EL +++
Sbjct:   28 DCCLVFAGKCMVPDVSLEEYGLQEGSTIHVLGRLRGGAQLGKVVKGRSQVKKKDG-KSKDFGDLQAKYNKMQELDAARLAAQAARMELQRRMEAEERNSRTNRLKIQNQWRKIMRLAKV-ESLRRDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQYQTALRAHLHGMDGLIDLQDARLLSLERHFEAELVSME 221
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BLAST of mRNA_P-littoralis_Contig175.13.1 vs. uniprot
Match: A0A7S4D6K3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6K3_HETAK)

HSP 1 Score: 211 bits (537), Expect = 4.580e-64
Identity = 127/197 (64.47%), Postives = 154/197 (78.17%), Query Frame = 1 
Query:  274 DDIRLVFAGKDLQEGRPLLGYGLGGESTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYAKMQEMDVARQQAIAAKAELRRRVEQEEKNSKMNRLKIQNQWRKIMRLAKVVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELQTLQ 864
            D   L   G+ L   R +  YGL   +T+ +  RL G A LGK +KG ++ +  GA     +AEL+A+YAKM+E D  RQ+A+  + EL+ R+EQE+KNSK N+LKIQNQWRKIMRLAKV ESL+KDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHL+N+D+LIDLQD+RLLALEQEFE EL+ L+
Sbjct:   40 DSYYLTQGGRGLLLNRTVADYGLRQGTTLDIQFRLTGAANLGKKIKGSAEQRAAGAP----FAELEARYAKMREADTLRQRALLKQQELKSRMEQEQKNSKTNQLKIQNQWRKIMRLAKV-ESLKKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLRNLDRLIDLQDARLLALEQEFEGELRELE 231
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BLAST of mRNA_P-littoralis_Contig175.13.1 vs. uniprot
Match: A0A7S2BVH9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BVH9_9STRA)

HSP 1 Score: 196 bits (498), Expect = 4.950e-55
Identity = 124/194 (63.92%), Postives = 147/194 (75.77%), Query Frame = 1 
Query:  283 RLVFAGKDLQEGRPLLGYGLGGESTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYAKMQEMDVARQQAIAAKAELRRRVEQEEKNSKMNRLKIQNQWRKIMRLAKVVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELQTLQ 864
            R+  A  D+QEG           ST+H+L RL G A LGK +KGR+   K+G        + Q KYA+MQE     Q+ +AA+ EL+ R+EQE  NS++NRLKIQNQWRKIMRLAKV E+LRK+IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ +LRAHL+NMD+LIDLQD+RLLALEQEFE EL TL+
Sbjct:   24 RMSLADHDVQEG-----------STLHLLFRLPGAALLGKQMKGRA---KQG--------DNQDKYARMQEQGALEQKYLAARNELKNRMEQERANSRVNRLKIQNQWRKIMRLAKV-ENLRKEIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQMSLRAHLENMDRLIDLQDTRLLALEQEFEKELYTLE 194
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BLAST of mRNA_P-littoralis_Contig175.13.1 vs. uniprot
Match: A0A3L6VNT2_9STRA (NYD-SP28 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VNT2_9STRA)

HSP 1 Score: 169 bits (429), Expect = 4.860e-48
Identity = 105/179 (58.66%), Postives = 133/179 (74.30%), Query Frame = 1 
Query:  343 GGESTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYA----KMQEMDVARQQAIAAKAELRRRVEQEEKNSKMNRLKIQNQWRKIMRLAKVVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELQTLQK 867
            GG    +V  ++RGGAQLGK VKG S+  KKG +  K   + + + A    +++  D  ++ A+  KA+L+  +E+E+K SKMN+LKIQN WRKIMRL KV E+LRKD+EI SQNHERDVDRKDAIIQMLDRDLEEAE+QFQ ALR+HL N+D LIDLQD RLL LE EFE +L  L++
Sbjct:    5 GGGKVYYVTRKVRGGAQLGKAVKGSSK-DKKGKKDGKGMTDEERRLADSINRLEMSDYLKKLAVTKKAQLKEFMEKEQKISKMNKLKIQNHWRKIMRLVKV-EALRKDVEIKSQNHERDVDRKDAIIQMLDRDLEEAEEQFQMALRSHLLNVDHLIDLQDGRLLGLEDEFEKDLHALER 181
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BLAST of mRNA_P-littoralis_Contig175.13.1 vs. uniprot
Match: A0A7S2HDB4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HDB4_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.950e-47
Identity = 110/211 (52.13%), Postives = 150/211 (71.09%), Query Frame = 1 
Query:  259 QKSIGDDIRLVFAGKDLQEGRP--------LLGYGLGGESTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYAKMQEMDVARQQAIAAKAELRRRVEQEEKNSKMNRLKIQNQWRKIMRLAKVVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELQTLQK 867
            +K +  + R+ F G++L+            L  YG+   ST+H++ R++G A LGK +KGR++ + K             +YA+ +E +   Q+ + A+  L+ R+ QE+ NS++N+LKIQNQWRKIMR  K  E+L+K+IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ +LR+HLQNMD+LIDLQD+RLLALEQEFE +L TL++
Sbjct:   37 EKILPFEQRICFGGRELRRHSSGTTKTIFNLADYGVQDCSTLHLMLRVKGSALLGKPIKGRAKAQDKD------------QYARNREQNEQEQKYLEARNALKLRLAQEQANSRINKLKIQNQWRKIMRPEKA-ETLKKEIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQMSLRSHLQNMDRLIDLQDTRLLALEQEFEKDLLTLEQ 234
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BLAST of mRNA_P-littoralis_Contig175.13.1 vs. uniprot
Match: F0Y381_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y381_AURAN)

HSP 1 Score: 172 bits (437), Expect = 7.710e-47
Identity = 100/127 (78.74%), Postives = 111/127 (87.40%), Query Frame = 1 
Query:  484 KMQEMDVARQQAIAAKAELRRRVEQEEKNSKMNRLKIQNQWRKIMRLAKVVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELQTLQ 864
            + +E D   Q+  AA+ EL++R+EQE+ NS+MNRLKIQNQWRKIMRLAKV ESLRK IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ ALR+HLQNMDQLIDLQDSRLL  EQEFE EL TL+
Sbjct:    2 RQREYDAQNQKYQAARNELKQRMEQEKANSRMNRLKIQNQWRKIMRLAKV-ESLRKGIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQMALRSHLQNMDQLIDLQDSRLLTSEQEFEQELHTLE 127
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BLAST of mRNA_P-littoralis_Contig175.13.1 vs. uniprot
Match: A0A485LLB2_9STRA (Aste57867_22339 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLB2_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.460e-45
Identity = 105/175 (60.00%), Postives = 133/175 (76.00%), Query Frame = 1 
Query:  355 TVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYA----KMQEMDVARQQAIAAKAELRRRVEQEEKNSKMNRLKIQNQWRKIMRLAKVVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELQTLQK 867
              HV  +LRGGAQLGK VKG S+  KKG +  K   + + + A    +++  D  ++ A+  KA+L+  +E+E+K SKMN+LKIQN WRKIMRL KV E+LRK++EI SQNHERDVDRKDAIIQMLDRDLEEAE+QFQ ALR+HL N+DQLIDLQD RLL LE+EFE +L  L++
Sbjct:    7 VFHVSRKLRGGAQLGKAVKGSSK-DKKGKKDGKGMTDEERRLADSINRLEMSDYLKKLAVTKKAQLKEFMEREQKISKMNKLKIQNHWRKIMRLVKV-EALRKEVEIKSQNHERDVDRKDAIIQMLDRDLEEAEEQFQMALRSHLLNVDQLIDLQDGRLLGLEEEFEKDLHALER 179
[Close]
BLAST of mRNA_P-littoralis_Contig175.13.1 vs. uniprot
Match: A0A024TIJ1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TIJ1_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.510e-45
Identity = 106/177 (59.89%), Postives = 128/177 (72.32%), Query Frame = 1 
Query:  346 GESTVHVLGRLRGGAQLGKVVKGRSQVKK---KGAEKPKEYAELQAKYAKMQEMDVARQQAIAAKAELRRRVEQEEKNSKMNRLKIQNQWRKIMRLAKVVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELQTLQK 867
            G    HV  +LRGGAQLGK VKG S+ KK    G     E   L    ++++  D  ++ A+  KA+L+  +E+E K SKMN+LKIQN WRKIMRL KV E LRK++EI SQNHERDVDRKDAIIQMLDRDLEEAE+QFQ ALR+HL N+DQLIDLQD RLL LE EFE +L  L++
Sbjct:    5 GGRVFHVARKLRGGAQLGKAVKGSSKDKKGKKDGKGMTDEERRLADSISRLEMNDYLKKLAVTKKAQLKEFMEKEHKISKMNKLKIQNHWRKIMRLVKV-EGLRKEVEIKSQNHERDVDRKDAIIQMLDRDLEEAEEQFQMALRSHLLNVDQLIDLQDGRLLGLEDEFEKDLHALER 180
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig175.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVY5_ECTSI1.060e-12579.04Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A6H5L6H2_9PHAE5.170e-11674.83Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A835ZEY8_9STRA1.660e-7173.47Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A7S4D6K3_HETAK4.580e-6464.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2BVH9_9STRA4.950e-5563.92Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A3L6VNT2_9STRA4.860e-4858.66NYD-SP28 domain-containing protein n=2 Tax=Aphanom... [more]
A0A7S2HDB4_9STRA1.950e-4752.13Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
F0Y381_AURAN7.710e-4778.74Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A485LLB2_9STRA1.460e-4560.00Aste57867_22339 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TIJ1_9STRA1.510e-4559.89Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig175contigP-littoralis_Contig175:82168..87297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVY5
Preferred nameCCDC65
PFAMsNYD-SP28,NYD-SP28_assoc
Model size879
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003352,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0032879,GO:0032886,GO:0034622,GO:0035082,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0051270,GO:0060271,GO:0060632,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons6
Evalue1.73e-126
EggNOG OGs2CMHW@1|root,2QQDD@2759|Eukaryota
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-01_002630.1
Descriptionregulation of cilium movement
Cds size879
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig175.13.1prot_P-littoralis_Contig175.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig175 82168..87297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789842.118193-CDS-P-littoralis_Contig175:82167..822481680789842.118193-CDS-P-littoralis_Contig175:82167..82248Pylaiella littoralis U1_48CDSP-littoralis_Contig175 82168..82248 +
1680789842.1295564-CDS-P-littoralis_Contig175:82476..828181680789842.1295564-CDS-P-littoralis_Contig175:82476..82818Pylaiella littoralis U1_48CDSP-littoralis_Contig175 82477..82818 +
1680789842.1380424-CDS-P-littoralis_Contig175:85407..854931680789842.1380424-CDS-P-littoralis_Contig175:85407..85493Pylaiella littoralis U1_48CDSP-littoralis_Contig175 85408..85493 +
1680789842.146896-CDS-P-littoralis_Contig175:86006..861301680789842.146896-CDS-P-littoralis_Contig175:86006..86130Pylaiella littoralis U1_48CDSP-littoralis_Contig175 86007..86130 +
1680789842.1558602-CDS-P-littoralis_Contig175:86670..867751680789842.1558602-CDS-P-littoralis_Contig175:86670..86775Pylaiella littoralis U1_48CDSP-littoralis_Contig175 86671..86775 +
1680789842.1687713-CDS-P-littoralis_Contig175:87156..872971680789842.1687713-CDS-P-littoralis_Contig175:87156..87297Pylaiella littoralis U1_48CDSP-littoralis_Contig175 87157..87297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig175.13.1

>prot_P-littoralis_Contig175.13.1 ID=prot_P-littoralis_Contig175.13.1|Name=mRNA_P-littoralis_Contig175.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=293bp
MEDNVRSCGDVSPHKLVQLFLATPQGPSITVQDVNLATDDVSRLRQAWDA
AINPVIDSSGGSTEKPSSDGDPETRATCAGSATIVMQKSIGDDIRLVFAG
KDLQEGRPLLGYGLGGESTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKP
KEYAELQAKYAKMQEMDVARQQAIAAKAELRRRVEQEEKNSKMNRLKIQN
QWRKIMRLAKVVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQ
FQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELQTLQKARL*
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mRNA from alignment at P-littoralis_Contig175:82168..87297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig175.13.1 ID=mRNA_P-littoralis_Contig175.13.1|Name=mRNA_P-littoralis_Contig175.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5130bp|location=Sequence derived from alignment at P-littoralis_Contig175:82168..87297+ (Pylaiella littoralis U1_48)
ATGGAGGATAACGTTCGAAGCTGCGGAGACGTGTCACCCCATAAGCTGGT
TCAGCTTTTCCTAGCTACCCCCCAGGGACCGGTAAGTAGATCACAGACAA
GAGTTGACTACAGTTGAGTGCCCTGCATACACGAGAGCTGATTACGGTTG
ATTACAGTACAGCAGTAGCGTGCTCAAGCACGAAGAATTGTACCGTTGCA
GAAATGACTGCGAATGGAAAATTAAAAGCTTCACGACGACGTCCGTGTCT
ACTCCTTGCCACTGAACGACTCATCTACTACGCGCGGTTCATGGTGCATG
GACAAACAGTCTATCACAGTACAGGACGTGAATCTTGCTACTGATGATGT
GTCTCGACTCCGGCAAGCCTGGGATGCAGCGATCAATCCAGTAATAGACA
GTAGCGGTGGCTCCACCGAGAAGCCATCTTCGGACGGCGACCCTGAAACG
AGAGCGACATGTGCGGGTTCGGCGACCATCGTAATGCAAAAAAGCATCGG
TGACGACATCCGTTTGGTCTTCGCCGGGAAGGATCTTCAAGAGGGGCGGC
CACTTCTAGGATACGGCTTAGGGGGCGAGAGTACCGTACACGTTCTTGGA
AGACTCAGAGGGGGAGCTCAGCTCGGAAAGGTTGTCAAGGGAAGAAGCCA
GGTGCGATACCACACAGAGAGCGTTATCAATCTGTTGGGGAAAACATCAA
AGAGTAAAATTCTCCAGAGGATTTCCGACTGATGAGCTTCACGACACAAG
TTGCTACTGCTGTAATGCGGTTCGAAAGGCGGGTTTTGAAGTGAGATCAC
TTGATTTGAGTTGGTGCAACCCCCCACTTTTTAGAAGAGAGAAGGATTGA
TTTTACTCAGGAGAGAGTAGGATTTACTTGAATTTATTCAGGAGCCGCGG
GCGGCGCTCTACTCTATGTGTTGGTCTAACATTTACAAAAAAGAGCCAAA
CCTTTGAAATGTCTGGTATGAGTCCAAAACAGATCGAAGCACCGCCTTGC
ACGAAATCCCTCCCGCATCCAGCCGATGGATTCTTGGTTGATCGCACACC
GTCGTCAGCACAAAGAACGTGTGATACGACCCAAAAACGTGTGTGTGTCG
GGCCGCTGCACGTCGCTTGATTGTTGAAATGACGTTTGGCGCACTTGCCT
TCTGGAACACACGATTTTAACAGTCTAGCACGGTTTCAACACAAAGGTCA
ACGCCACATGGCTCGGGCGAAAGCCCTACACCATACCAGTCCATGCTGTA
GCACGTCGGTTGAATGCACACCGCGTGGAGCACACAGAGCGTGGTGGGAT
CAAAATGGGAGTGTCTGACCGTAGAAGGCCATGAAGATCCAGACTACGGG
GTATGTTTCTGCTGTACATAACGGACGTTGCCCAACAACTTCGCACGAGA
CGTGCGCAGATCGCAACGGCTCATAGCCTGACTGAAAGTCTTGCACTGTG
GTGACCGATAAAGAAAGTTGCATATTGTAAGCAATAGCGAGCAGCGCACA
GCCCAGTCTGCTATTAAAATAGGGGTGCCGTTTCGACGAACAAGAAAAAA
AACGGTTTCTGGCCAACATCGATCACCAACCGCAGACGCATCACGTTCCA
TCCCCCGTCTGAATCGCTGATGATTTGAGAGTGAGTTTAACCCTTCTGGA
TCTTCAGTGCATTTTTTTGTTCACCGAAATTTTTTCATTTTGTATTATTT
ATTTTCTTAGGGCGGTCTCGCCGGGACATGGGGATGGAGTCCGGGATGGG
GACGAAAACAACAAATAAATCCCTCCTAACCAAAGAACGCGATAGAGTTG
TACACCATTGATCATAAAAGAAAACACCGCACCAGCAGTATCCAACACGA
GCAACACACAACAGTTTTCCAACCACTGGAGGGTTTGCTACATGCATCCT
GCTGTGCCCCAGATTGACAAAATGAAGGTTATGGGCTACAGTGGACAAAA
ATGCGCTAAAAAAATGCGCTATTCCTGAAATGACTTGATTTCATTTAGGT
ATGGGAGAGCAAGGCCTGTGATGACCAGTCATCATTTCGCGATATTTGAG
AGCAGGAGGCGTCATAGCGATCATCGTTTAACTCTCCTCGTCTCTCCAGG
GACGCTGCCAGCCCGCTGCGAGACCTTGTTAGTGACCCCGGCTGAATAAC
TGTGAGGTGCTCACATGTCAAGTTTCTCATGATTTGTGCACGCAGAGCCA
AGAGCTGGGTTTGTTTGTGTCTGGTTCTCGGGCGGTGGAATACCGGCTGG
TTCGGTTTTTTAGAACCCGGGCTATTCGGGTTGCCCCGCCGAAACACCGT
GGTCCCAGAAGGGTTAAACAGATCGCAACAGCACAGCAGCACGCAAATAA
ACGAGCGAGCCTCACAGCAGCAAGAGGGGCTGAACGTCGATTTCATTCAA
TCCGTTGTGAACAGAAACCAGCCAAGAATTGTTGTAAAATAGGTGTTCTT
AGAGTGCTACACGTGTACACACACACATACGCGAGCCTGCAGCAGCGACC
GCAAGACACGTACCATGGCACCTCCGGAGTCTCGACTACCTAGTCCCCAA
GGCCATACCCTCTCGACCTACAGCAGTAATTCTCATTACAAACTACCTCA
GGTGAACCCAAAGCTCGGGAGATACAGCTGGTCGAGAGCGATGGATCACA
ATGATGATGACCACAGAGCCAGGTGTCCTGTAGCCGCCGCAGCAACAAAA
TATGGCACATTTTGAATTGTTGCGGCGCTAAAGGACGGCTTTTGTTTTCT
CGCTCCGAGATGGCTATTCTAAACGCAAGATGATAACACAGATTCGCCAA
AAAGCGACCTTCCCATATTGGCAACCAGCAAACGCTGTCACCACGTCCTA
GATCGTCTTTTGAACTCGCAAGGCCCTGTTCCGAGGGAGGATCTTAAAAA
CATTGAGCTTACAAACACGGTCCCCAGCCATATTTCATCACCCGACATAA
CCCCGCCTTCCTCACTGTGCGGGAAGGCGGGTCAGCAATATCACCGTTGA
CTTTCAAAATATTGTGGATCGTGCATATGCACCATTGGAGCGCGGAGGGC
GAAACTTAGACCCTACAGCAGAGAGATGAGTATATACAGTAACGAAAGTT
GAAAGTTAGGCAAAGTTCAAACGTCAGACGGGAAGGAGGACCGGCGGGAG
CATCGTTTGACAAGAGTTCCAGTCCTGTACCAAGTCACTATTTTAATCTC
ATCACTTCATGCACACCGGTGGACGCGCCGCCCTTCCCAGGTGAAAAAGA
AGGGCGCCGAAAAGCCCAAGGAGTATGCCGAGCTGCAGGCGAAGTACGCC
AAGATGCAGGAGATGGATGTGGCCAGGTTTGACGCACTACATGAACACTC
CGCTGAAATGTTTGGCTTGGATCCGTCTAGTATGACAGCGTTTCGTGGTT
TCTATCGTGTCGCAACCCCAGTGATTATGTAACACTGTTCGTACAACCAA
TTGGATTCGACGTCTGGTCTAACCCTGGTGTTTGTGCTTGCTAGACAAAA
AAATGCGCATCGCGTAACACGATACTTCGAGCATTCCCCCGGACGGCTCG
TCGACCCATTCCTCAATGTGTGCTGAAAATAATTAAACGTGAGGGCCGAA
ATTTAAACATGACAAAAGCTGCAACCAACCATGGTTCCCCGCTTCATTTT
CTGTGTGAGGCTTAGGTACGAGTAATCATTGCCAACAAGTTTTAACAGCA
GGCTTTGCCGGCTTTCGGTTCTACAATTGATTTTCGTTTTTTGTCTTCTT
TCATTATTCATGTTCGCGCATCACCACAGAAAGGTCTATGCATGACCTGA
CAAGCAAAGAAACGACGATCCATCGGCCGATCGATGCAGGCAGCAGGCCA
TTGCGGCGAAGGCAGAGCTGCGACGCCGCGTCGAGCAGGAGGAGAAGAAC
AGCAAGATGAACAGACTCAAGATTCAGAACCAGTGGAGAAAGATCATGCG
CCTCGCAAAGGTAGTGGCAGATGGGGTGACCACCGGAAGGTGGAAGGAGT
GTACCACGCGGGGGGGGGGGGGTGAATGCTAGAGAGGGAAACAGCCGTAT
GGCAATCGTGGCTGGCTGGCAAGAAGTAACAGGGGGGAAAGAGAAGCGGG
ATTCGGCGAAGAAAGAGGGAGTGGACGAAACAATGGGTCGCGATGCGCCA
CTTTTTTACACGAAGAATTGTAAAATTTGGACTCAGCACGGTAGCTGTCT
GTCCAAATCATTTTTTGTTTGGCTACGACATTGCAGCAGGAAGGGAACTC
AAACGATCGCCGATAACAAATATGGACAAGAACCTCTGAGCATGGTGCAC
GACTACAAACAGCTACCCTTGAAAAAACTACATCGAAAAAAAAAACGCGG
GTGTGGTCTGTCTCGGAACAGTCATCAAGATGCCGCAGTCTTTCAGGCGA
CAAACAAAACAACAAGATTACCACCCGGAATGACATCGCTGTTAAACTAT
TGCTTAAGTAAACTTTGGAGGTGCTCCCCTACTCTGTTCGTATACATATG
TAGGTGGAAAGCCTTCGCAAGGATATCGAGATTCTATCGCAGAACCACGA
GCGAGACGTCGACCGTAAGGACGCCATCATCCAGATGCTCGACCGAGATC
TCGAGGAGGTGAGGAACAACTCCTCGACAGAAAGGGGTGCGGGAACGAAC
CATTATTGTGTGACCACCACACAGGTGCTATGATAACCTAGACCTGGCGA
AAGGAGTTGAAAGAGAACCGCTGCCTACTGTGAGCGAGCGCGAAGCGAGC
ACCGGCTGATCCCGAGCCTTCCACGGAAAAATACAGAAAACCCTGTCATT
CGTCATCTAAGGATAAACTCCTAAATACGGGCTAGCTAGGTCGAGGCCTA
GGATGCTCTAGGGAGAAGCTTCAGCTTTTTTGTGGGTGCAGTTTTTGTTT
CTCCTCCCTCCCTTGCCTTCCCCTTCTCTCCTATCTTATTCCAAACGCCT
CCCCCCGTTTGGCCACCGGTCGGGGTTTCCACGAGACAGGCGGAAGATCA
GTTCCAGACCGCTTTGAGGGCCCACCTCCAAAACATGGATCAGCTCATCG
ATCTGCAGGACTCGAGGCTGTTGGCGCTTGAGCAGGAGTTTGAAGTGGAG
CTCCAGACACTTCAGAAGGCGCGTCTCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig175:82168..87297+

>mRNA_P-littoralis_Contig175.13.1 ID=mRNA_P-littoralis_Contig175.13.1|Name=mRNA_P-littoralis_Contig175.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=879bp|location=Sequence derived from alignment at P-littoralis_Contig175:82168..87297+ (Pylaiella littoralis U1_48)
ATGGAGGATAACGTTCGAAGCTGCGGAGACGTGTCACCCCATAAGCTGGT
TCAGCTTTTCCTAGCTACCCCCCAGGGACCGTCTATCACAGTACAGGACG
TGAATCTTGCTACTGATGATGTGTCTCGACTCCGGCAAGCCTGGGATGCA
GCGATCAATCCAGTAATAGACAGTAGCGGTGGCTCCACCGAGAAGCCATC
TTCGGACGGCGACCCTGAAACGAGAGCGACATGTGCGGGTTCGGCGACCA
TCGTAATGCAAAAAAGCATCGGTGACGACATCCGTTTGGTCTTCGCCGGG
AAGGATCTTCAAGAGGGGCGGCCACTTCTAGGATACGGCTTAGGGGGCGA
GAGTACCGTACACGTTCTTGGAAGACTCAGAGGGGGAGCTCAGCTCGGAA
AGGTTGTCAAGGGAAGAAGCCAGGTGAAAAAGAAGGGCGCCGAAAAGCCC
AAGGAGTATGCCGAGCTGCAGGCGAAGTACGCCAAGATGCAGGAGATGGA
TGTGGCCAGGCAGCAGGCCATTGCGGCGAAGGCAGAGCTGCGACGCCGCG
TCGAGCAGGAGGAGAAGAACAGCAAGATGAACAGACTCAAGATTCAGAAC
CAGTGGAGAAAGATCATGCGCCTCGCAAAGGTAGTGGAAAGCCTTCGCAA
GGATATCGAGATTCTATCGCAGAACCACGAGCGAGACGTCGACCGTAAGG
ACGCCATCATCCAGATGCTCGACCGAGATCTCGAGGAGGCGGAAGATCAG
TTCCAGACCGCTTTGAGGGCCCACCTCCAAAACATGGATCAGCTCATCGA
TCTGCAGGACTCGAGGCTGTTGGCGCTTGAGCAGGAGTTTGAAGTGGAGC
TCCAGACACTTCAGAAGGCGCGTCTCTAA
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