mRNA_P-littoralis_Contig174.90.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.90.1
Unique NamemRNA_P-littoralis_Contig174.90.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig174.90.1 vs. uniprot
Match: D7FYT5_ECTSI (40S ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYT5_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 1.920e-65
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 3 
Query:    3 AIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESIDIDPDTKDLLDALDFKDLAGVAVSAVPARV 338
            AIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESIDIDPDTKDLLDALDFKDLAG+AVSAVP RV
Sbjct:   14 AIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESIDIDPDTKDLLDALDFKDLAGIAVSAVPPRV 125
[Close]
BLAST of mRNA_P-littoralis_Contig174.90.1 vs. uniprot
Match: A0A836CIS9_9STRA (40S ribosomal protein S17 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIS9_9STRA)

HSP 1 Score: 184 bits (466), Expect = 3.530e-55
Identity = 94/106 (88.68%), Postives = 102/106 (96.23%), Query Frame = 3 
Query:    6 IIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESIDIDPDTKDLLDALDFKDLAGVAVSA 323
            IIEKYYSRLT+DFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERR+DFVPEVSAIEQE I+IDPDTK+LLDALDFKD+  +++ A
Sbjct:   15 IIEKYYSRLTLDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVSAIEQERIEIDPDTKELLDALDFKDIPNLSIVA 120
[Close]
BLAST of mRNA_P-littoralis_Contig174.90.1 vs. uniprot
Match: A0A7S4SMK2_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SMK2_9DINO)

HSP 1 Score: 183 bits (465), Expect = 6.060e-55
Identity = 94/106 (88.68%), Postives = 101/106 (95.28%), Query Frame = 3 
Query:    6 IIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESIDIDPDTKDLLDALDFKDLAGVAVSA 323
            IIEKYYSRLT+DFHTNKRVCDEVAIIPSKRMRNKIAGF+THLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSA++QE I++DP TK +LDALDFKDL GV VSA
Sbjct:   25 IIEKYYSRLTLDFHTNKRVCDEVAIIPSKRMRNKIAGFITHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSALDQEVIEVDPQTKAMLDALDFKDLPGVQVSA 130
[Close]
BLAST of mRNA_P-littoralis_Contig174.90.1 vs. uniprot
Match: F0Y4Q4_AURAN (Uncharacterized protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0Y4Q4_AURAN)

HSP 1 Score: 181 bits (459), Expect = 3.770e-54
Identity = 90/105 (85.71%), Postives = 101/105 (96.19%), Query Frame = 3 
Query:    6 IIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESIDIDPDTKDLLDALDFKDLAGVAVS 320
            I+EKYYSRL +DFHTNKRVCDEVA++PSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAI+Q+ ++IDPDTK++LDALDFKDL G+ VS
Sbjct:   15 IVEKYYSRLGVDFHTNKRVCDEVAVVPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIDQDFVEIDPDTKEMLDALDFKDLPGIQVS 119
[Close]
BLAST of mRNA_P-littoralis_Contig174.90.1 vs. uniprot
Match: Q8ISP1_BRABE (40S ribosomal protein S17 n=4 Tax=Branchiostoma TaxID=7737 RepID=Q8ISP1_BRABE)

HSP 1 Score: 163 bits (412), Expect = 6.620e-47
Identity = 78/105 (74.29%), Postives = 100/105 (95.24%), Query Frame = 3 
Query:    6 IIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESIDIDPDTKDLLDALDFKDLAGVAVS 320
            IIEKYY+RLT+DFHTNKR+C+E+AIIPSK++RNK+AGFVTHLMKRIQRGPVRGIS+KLQEEERERR ++VPEVSAI+Q+ I++DPDTK++L ALDF +++G+ V+
Sbjct:   16 IIEKYYTRLTLDFHTNKRICEEIAIIPSKKLRNKVAGFVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSAIDQDIIEVDPDTKEMLKALDFGNISGLQVT 120
[Close]
BLAST of mRNA_P-littoralis_Contig174.90.1 vs. uniprot
Match: A0A7S0LDM9_9EUKA (Hypothetical protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S0LDM9_9EUKA)

HSP 1 Score: 162 bits (411), Expect = 6.620e-47
Identity = 84/105 (80.00%), Postives = 97/105 (92.38%), Query Frame = 3 
Query:    6 IIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESIDIDPDTKDLLDALDFKDLAGVAVS 320
            IIEKYYS+LT+DFHTNKRV  EVAIIPSKRMRNKIAGF+THLMKRIQRGPVRGISLKLQEEERE R+DFVPE SAIEQ+ I ID DTKD+L++++FKD++GV V+
Sbjct:   15 IIEKYYSKLTLDFHTNKRVTAEVAIIPSKRMRNKIAGFITHLMKRIQRGPVRGISLKLQEEEREARLDFVPERSAIEQDVIVIDQDTKDMLESINFKDMSGVQVA 119
[Close]
BLAST of mRNA_P-littoralis_Contig174.90.1 vs. uniprot
Match: A0A1E7EU86_9STRA (Ribosomal protein S17 component of cytosolic 80S ribosome and 40S small subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EU86_9STRA)

HSP 1 Score: 162 bits (411), Expect = 7.050e-47
Identity = 81/110 (73.64%), Postives = 98/110 (89.09%), Query Frame = 3 
Query:    6 IIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESIDIDPDTKDLLDALDFKDLAGVAVSAVPAR 335
            I+E YY RLT+DFHTNKR+ DEVAI+PSKRMRNKIAG+ THLM+RI +GPVRGISLKLQEEERERR+DFVPEVSA+EQ++I IDPDT+D+L++L F  L GVAV++ P R
Sbjct:   15 IVENYYPRLTLDFHTNKRIVDEVAILPSKRMRNKIAGYTTHLMRRIAKGPVRGISLKLQEEERERRLDFVPEVSALEQDTITIDPDTRDMLESLGFGSLNGVAVNSGPHR 124
[Close]
BLAST of mRNA_P-littoralis_Contig174.90.1 vs. uniprot
Match: A0A7S2YDZ4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YDZ4_9STRA)

HSP 1 Score: 162 bits (410), Expect = 9.650e-47
Identity = 80/104 (76.92%), Postives = 97/104 (93.27%), Query Frame = 3 
Query:    6 IIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESIDIDPDTKDLLDALDFKDLAGVAV 317
            I+EKYY+RLT+DFHTNKR+ D+VAI+PSKR+RNKIAG+ THLM+RI +GPVRGISLKLQEEERERR+DFVPEVSA+EQE+I IDPDT+D+L++L F  LAGVAV
Sbjct:   15 IVEKYYTRLTLDFHTNKRLIDDVAILPSKRIRNKIAGYTTHLMRRIAKGPVRGISLKLQEEERERRLDFVPEVSALEQETIQIDPDTRDMLESLGFNGLAGVAV 118
[Close]
BLAST of mRNA_P-littoralis_Contig174.90.1 vs. uniprot
Match: M4BS57_HYAAE (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BS57_HYAAE)

HSP 1 Score: 162 bits (410), Expect = 1.200e-46
Identity = 89/110 (80.91%), Postives = 97/110 (88.18%), Query Frame = 3 
Query:    6 IIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESIDIDPDTKDLLDALDFKDLAGVAVSAVPAR 335
            IIEKYYSRLT+DF TNKRVCDEVAIIPSKRMRNKIAG++THLMKRIQ G VRGISLKLQEEERERRMDFVPEVSAI+ ++I+ID DTKDLL  LD K LAGV V  + AR
Sbjct:   15 IIEKYYSRLTLDFDTNKRVCDEVAIIPSKRMRNKIAGYITHLMKRIQHGQVRGISLKLQEEERERRMDFVPEVSAIDTDNIEIDNDTKDLLVHLDLK-LAGVHVPQLKAR 123
[Close]
BLAST of mRNA_P-littoralis_Contig174.90.1 vs. uniprot
Match: A0A482RVV4_9ARCH (40S ribosomal protein S17 (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVV4_9ARCH)

HSP 1 Score: 162 bits (409), Expect = 1.240e-46
Identity = 84/110 (76.36%), Postives = 97/110 (88.18%), Query Frame = 3 
Query:    6 IIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESIDIDPDTKDLLDALDFKDLAGVAVSAVPAR 335
            IIEKYYS+LT+DFHTNKR+  EVAIIPSKRMRNKIAGF+THLMKRIQ+GPVRGISLKLQEEERE RMDFVPE SAI+++ I +D DTK +LDAL+FKDL GV V+   A+
Sbjct:   11 IIEKYYSKLTLDFHTNKRITGEVAIIPSKRMRNKIAGFITHLMKRIQKGPVRGISLKLQEEEREARMDFVPERSAIDKDEILVDSDTKAMLDALNFKDLVGVRVADANAK 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYT5_ECTSI1.920e-6598.2140S ribosomal protein S17 n=2 Tax=Ectocarpus TaxID... [more]
A0A836CIS9_9STRA3.530e-5588.6840S ribosomal protein S17 n=2 Tax=Tribonema minus ... [more]
A0A7S4SMK2_9DINO6.060e-5588.68Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
F0Y4Q4_AURAN3.770e-5485.71Uncharacterized protein n=2 Tax=Pelagomonadales Ta... [more]
Q8ISP1_BRABE6.620e-4774.2940S ribosomal protein S17 n=4 Tax=Branchiostoma Ta... [more]
A0A7S0LDM9_9EUKA6.620e-4780.00Hypothetical protein n=2 Tax=Eukaryota TaxID=2759 ... [more]
A0A1E7EU86_9STRA7.050e-4773.64Ribosomal protein S17 component of cytosolic 80S r... [more]
A0A7S2YDZ4_9STRA9.650e-4776.92Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
M4BS57_HYAAE1.200e-4680.91Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
A0A482RVV4_9ARCH1.240e-4676.3640S ribosomal protein S17 (Fragment) n=1 Tax=archa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:366000..372624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FYT5
Preferred nameRPS17
PFAMsRibosomal_S17e
Model size900
Max annot lvl2759|Eukaryota
KEGG koko:K02962,ko:K04324,ko:K06674,ko:K14807,ko:K20099
KEGG Pathwayko03010,ko04111,map03010,map04111
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000184,GO:0000956,GO:0002181,GO:0002182,GO:0002262,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030867,GO:0031090,GO:0031974,GO:0031981,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034101,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042254,GO:0042255,GO:0042274,GO:0042592,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0048872,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons2
Evalue2.47e-61
EggNOG OGsCOG1383@1|root,KOG0187@2759|Eukaryota
Ec32 ortholog description40S ribosomal protein S17
Ec32 orthologEc-19_002440.1
EC3.6.4.13
Descriptionribosomal small subunit assembly
Cds size306
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03009,ko03011,ko03036,ko03041,ko04030
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789840.3883438-UTR-P-littoralis_Contig174:365999..3665581680789840.3883438-UTR-P-littoralis_Contig174:365999..366558Pylaiella littoralis U1_48UTRP-littoralis_Contig174 366000..366558 -
1680789840.4243522-UTR-P-littoralis_Contig174:372589..3726241680789840.4243522-UTR-P-littoralis_Contig174:372589..372624Pylaiella littoralis U1_48UTRP-littoralis_Contig174 372590..372624 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789840.402006-CDS-P-littoralis_Contig174:366558..3666781680789840.402006-CDS-P-littoralis_Contig174:366558..366678Pylaiella littoralis U1_48CDSP-littoralis_Contig174 366559..366678 -
1680789840.410929-CDS-P-littoralis_Contig174:372403..3725891680789840.410929-CDS-P-littoralis_Contig174:372403..372589Pylaiella littoralis U1_48CDSP-littoralis_Contig174 372404..372589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.90.1prot_P-littoralis_Contig174.90.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 366559..372589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.90.1

>prot_P-littoralis_Contig174.90.1 ID=prot_P-littoralis_Contig174.90.1|Name=mRNA_P-littoralis_Contig174.90.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
MDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQE
EERERRMDFVPEVSAIEQESIDIDPDTKDLLDALDFKDLAGVAVSAVPAR
V*
back to top

mRNA from alignment at P-littoralis_Contig174:366000..372624-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.90.1 ID=mRNA_P-littoralis_Contig174.90.1|Name=mRNA_P-littoralis_Contig174.90.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6625bp|location=Sequence derived from alignment at P-littoralis_Contig174:366000..372624- (Pylaiella littoralis U1_48)
GAGCCATCATCGAGAAGTACTACTCTCGTCTGACCATGGACTTCCACACG
AACAAGCGCGTGTGCGACGAAGTTGCCATCATTCCGTCAAAGCGGATGCG
CAACAAGATCGCTGGCTTTGTCACACACCTCATGAAGCGTATCCAGAGAG
GCCCTGTGAGAGGCATTTCGCTCAAGCTCCAGGAGGAGGAGCGCGAGAGG
CGTATGGACTTCGTGCCGGAGGTATGATATGCATGGCTGCTGTACAGCAC
TAGGTTTTTCACTGCTAGTCATACCGCTTGTATTCGTAAGTACTGCTGCA
CTGCATTCCGTTATTGTATACTTGTACGAAGTCTTCGTACTTAAGTTTAT
TATATGTACTAGGTGTGGATTACTGCTGCTGCAATACATCCTGCTGTAGG
TACTGCACGCAGAGTCCGTGTGGCGTCCCCACTTGGCACTTACGTTTACG
GCAGTTACGGGTGTGGGTTCTGTATGGCACACTCCTAGAGCCAGTAACTG
GTGCATCTTTTTTGTCAAATTGAAACAATTCATGACAAATTGAAACAATT
CATAACAAAAACGACACGGCAGACATACAGCGTTCCACAGCCTCTGTACT
GCTGTGCTGCGTTGTCACGTCGTGCGAAGCTCGTGAGCAGCTCTTCGGTA
TATGATACTCGTCCTCGTAAAGGGAGGCAAATACCGGTTCAATGTCCTGT
TCCAATATTTGACGTTCACTGCTTGAAAGCAGGACAGCAGCAGCAGCAGG
CAGGGTAGAGGTCTGGAAAAATTGTGTTCTATTTTAGAGGGTGTTTGAAA
GGCTTTTGGTATGAGGGAGGGGATATGGGCCTGAAACTGCAGCGAACCAA
ACCGAATGACCATCCGGGTCTGTTTTTCCATATAACAATTGGAAAGAAAA
CCCGCAGTGGTCACGGGAGGAAACATTTGCTGCTCCAATTTCCCACTCCG
AAGTATTCATACAGCAACAGTATTGATTTTGCACCAGTTTTTGGTTCACG
CTGGTTCACGGTGAAGACCCCAGATTCCTCCAATACGCCGTAACGAACTC
AGGAAGTACTCGAACACGACATTTTTGGTAACAAACTGACCTCCGTCAAG
TGCTAAACACCATGGCATTGCTGGTTTTTCCCTTGAAGCTGCAGCGGTAG
CGCTAGGGAAGAATGTGTTCCGGTCAATGGTTGGTGTAAGGTAAGACCCC
CCGGAGTTTAAAAAAATCAGGCTGTCTACGCTAAATCCTCAATACATTGG
GGTTTAAGTATAGGCTCTTCGATTTTTACAGTGGTTGAACCCTCTTACCC
CGAGATGGCTAAATGTCTCCATTTTGTTTTTGTCACTTGGAAAATCACGT
GACTCCCAATAGCTTAACTTTTACCTCGCTGACCGCTCAATTATCAAACG
CATTCTAAAAGCAAGAGAACGCATGACCATTTTTTTGGCGACGAGTTCAC
TTGCTTTATAGAGCTTTTGTTAAAAAATTGTTCCATGATTTTTTACAGGG
GAGTAGATACAGGCTTTGAGATGTTTTCAAATACCCGTAGTTTCATTAGA
TCCCGAGGAAGGTCATAACGAAACATTTGTCCCAATGTCATTTACTAACG
TTTTTTTTCTGGAGAAGGCGTAAAAGTTTCAATGAAGGACCGGTTCTGAA
CTTGATCATGTTGCCATACGGGGCATGTACATTTGGCTTCACTGACGTGC
GATTATTCGGGCGGTTTTTACATACCTAAATTTTGCACACCTGATATCTG
GTGCACTACGCAACTTTCGATCGGCGGGTTTGTAGTTTCGTTTTCGCTCA
CCAGATATTTGGGGTCCCAGGCAACCAAAGCAGTCCCGTATGGCCTTTAA
AGCGACAACGGAATTTGCGTTTTTCGTAGAACATGTGTGCAAATTTCATG
GCATTACTAAGAAAAACGCGTGAAAAATCGATGTCCAAGGAAGTTAAATT
GTGGGGAGCTAAATCCACGTATCGCCGCGCCTTCAGGCGTGTGCCCTTCC
GTGGTGTTTTCGGGTTGTGCAAGCTACCATCCCTGAGAAAGGTTTTCTTC
TGGTCCTGGAGAAATACTTGAAAAGGGTACTGGACAGCAACAAATTTACG
ATGAGTGACAAGGCAAAGTCGCGCTGCTCTCTCAATATTATATGCACTCA
AGTTCGAAGCGTGGTGTCGCCGCTGTTGGGATCCAATATCTTACCACACC
GGCACTCGCATCAAAGCATATCTTGGCTCGGTAACGTCGTGAGCACGCCT
CCATAAATTTCGTCCTTAACTCAACACGCTCCACTGCCTCTCAAGACCTT
TGGACTACTTGTGAACGGGGGTTCGTCTATCCTGCATCCTGAAGGGTCTT
GTTTACACTACCAAATCTTACCGGGCCGCCAGAAACCTGTGTGGTAAGTT
GAAATGTTGAGATATGGCCACGTCTCTACGCGCGTGTTGCACGACAGATT
GAGGTTTCGCTTCACCACGCAAATACTGGTCAGGGAATCCACGCAATAGC
AAGCGTTTGAAGGGTTTTCTTTGTCTTGTGATTCAGGTTGCACAGGTGGC
CACTGGGGCACATTATGGTAGCCTATCATTTTTCATAACGTAAAGAGGTT
GTGGGGTGGTTGTGGGAGGACGGAATTGACCTGAAACCTTTTTTTCTGTG
CTGCCAGCCCGCCCTGTTGCTTGCATCAAGAATGTTAGTACTATGTTTGT
TCGCACCAAAGGAACGAATATAGGGTTCAGGTCGATTCTATCCTCCCATA
GCCACCCCCAACCTTTCTAGGTTGAGCCATATGGATAACCTGCGACAACG
TGTCCCAGTGGCCACTGTGTGGGCGTATAATTCTACGACGACTTGGGTAT
GCGGCAATTCAAGCTGGGCCTTTCGCCCTCTATTGCGAAGTTGAGCGAGC
TGAATAACGGTGTGTGCCTGGTTTGTGACCACGGGCTAGACTAAATATAT
GCGATTGTGGTGGTAGTCACGTGACTAAGGTGACAAATGGAGACAATATG
TTATGTGCAGACTGTGGTCTTCACGCTCTCACGACGTAAAGAGAAAATCT
TCAAGAGCCCTCTCAGTAATATTCTCGTGCGGTGATTACCGCGGTCATGG
GACTTATGGCGTTACCGCGCGTTTTGAATTGTCACATTCCCATACAACCG
TTACCGGAGATTATCCCACTCCAATTCCCGTTGAAGAAAGTTGTCCCATT
ACCGCAGGCAAAATTACCGTGGAAATTATCTCGCGAACACCGCGATTTTT
GGGTACTGCGGTAGCAAGTGTAGCGACATTCACAAAGTCCCAACCACCGC
ACAGAAACCCATGTTGCATAACCGCCTTTGGAAAACAGTGTCCCTGAGAA
ATATACGATGAACACGTCATGTCAACAAAAAAAGTGAGAGGGAGGGGGTT
CATTTCCTGTCTGTTGTGACCGTTTTTTTTTTATCTTTTCCCACCTTTTT
TTCTGCAGCAGCGGGCTCGACTATAGAGTTGAGGCTATGTTGCTGCGTGC
AGTATAAGAATTTTTGGTTTGGAAAGTAGTGGTAGTAGTAATGACGGACG
CTGTAGTCGACACGCAGGATTCTGATTTGTTTTTGGTCGTCTGCTTTGGC
TTCAAATATCTGCCTTTGATCTAAGGAGTAGTTTTTGGGAATTTATCATA
CATACTTGGGCCTACGTTTTTGGTTGATAGATTCAACTCGCTTAGTTTTA
CACCATTCAAAGACTTCGTATTTATATAATAAATACGGAGTTTAAATTAT
AAAAACGGAGTTATGTAAATGCCGCATGGAATGACCATAGATTGTGAATG
CATCAAATGGCCCGCCGGAGATACCGACGGGGTATTCTTCCAGATCAAAG
ATAATCCCGTTCCTCGGGTTCACGGAACGATCCTCCTCCACAGGACAGCT
GCCTCCCAAAGGGAAACTGCGTTGATGATTCTCACCCCGTTTCTCCCTCT
CGTTGTCGAGAGAGGGCAACTCCGTGCGACTCCGCACCACACAACACGTG
AAGTAGAACCTACCTGACCGAACCTGAGTGCTGATAGCTTTTATAGTGGC
GTCGACGACAGGCAAAGTAGTGGTCATCTTTGACATGTCGAAACGAAAAA
GGAAACAAATATCATCGGAGGATCAGAGTGCTCCCCCCGACGCGAAACTT
GACTTCGAAGCCGAGGACAGCACCAAAGACGGCGACAAAGGCGATGACGG
TATATCATCGTCCAACGCAACTTCGTCGCACGCGCCGGAAGCAGCGGGGA
GCGCCCCTAGTGTCGAAGATCATGGACTTGTCGGTCGGTCCGACAAGGAA
CTTCTCCGCTTGAACTGGAGATCGATAGCTTTTATAGTTGCTTCGACCGT
TTTTCGATTATCGCGTTCTTGCTGTGAAAGTTCCACTCGCTTCGCTGCAT
CATACAATTCGCTAGTACAAAATACGAAACATAACCGCGGTTGTGACTAC
CGCGGAAACAATTTTCGTGTTGGCCAATTACTGAGGAACAATTACCGCGC
GTCACAGCGGTCGTCGAGTACGGCGGTAGCAGTTTTCGGGGCAGTCGATT
TCCTAAAATAAACGTGAATTACCGCGTTTCCTGACTACCACGGCAAATGG
TCACATTAACAGTCGTTACCGATAGACCCCCCGAAAATTCTCACTCTTTT
GGTCACTGTGTACCTACCGCGGTGTGGTTGTGTGAGGTTTCATCATATTG
CCCGCGATGAAGCCTTTTTGAGTGTGGGGCGTGTTTCAGATTTCGAGATC
CAAAGCGAACTTCAAAGAGCGCTCGGCGGGCGCATCACCTGTTAAAAAAA
GCGTGTACGTGTGAAAAACTTCGTACTCATTTGGGTTCTCATCTTCGACG
CAAACCTGCGCTTTTTGTAGAATTAGCTGCATCGCTGCCGACCCCACTTT
TTCGCCGGGTCCTGCGATTTCCAGGCTTTTTCGTTTCAGTACTCTTCTTG
TCTCCAACACCCGAACAAGGAGATAACACGCTCAAAGTGTCCAAGAGGTA
CAAGTAGTGAGTTCGAGGGTCTGACGGTTACTAGGTCCTAGCTCTGGCTT
GTCGAGTCTGGCTTAAGATTTGGAGGCAACCTGACGCTAGTTTTATTCCA
CGAACTGAAACAGTTGACGATCCATCGTGACCATATTTCCTTCACCGGTG
TCTTGGCTATCGTATTTTTAGCGTTGAGAGTGAAGTGAATGTAGCGTGAC
CATGGTTCCTGCACCTCCTGTATCTTGACTTTCGTGTCCTCATGTCTGCG
CGCGTGGAAAACGTCTTTGAGAGCCTTCGAATGACTTGAGCCCAGAGGCT
GAGCCTCAGCCACGAAGTCTGCGTGTTGTGCCCTACACTTGAAAAAATCT
CTAGGTTCTGAGTTTACAACAAACTACAAAACCGTTTTCTGACGAAAATA
TTGATGGCACGTACCGCTCAGAGACGGAATGGGGACCTTACAGAAAACTC
ACCTCGTGCGGCCTCGGATCGACCTCAGTGCGGAGTCTAGACTGGCGTAA
AGGATTGACAGCGCATTGTGCACAACAGGCTTAATCGTGTCGGTTATTTT
GACAGATATTATGCCATTATCCTGTTGCTTGTGATGGAAAATGGTGGTAA
CACCAGCCACGCTTTCGTCCGTGAAATACCACGCATAACGTTGAGGTGTG
ACTCAAATTTTACTGATGACGAAGTTTTATGTGCACCAAACCTTTGATGT
ACATTCGTCGGTGATGTCATATTCTCCGGAGTTCGTAGAACGCTTGAAGA
TTCACGCGCATGCGAACGATACCTCGGTGCCACCCTCGTCAGTTTCGCAC
TTTTGACCTCGTGCCGACACGGCCCTCATGTTGGCCTTGGTTGTCCTTCG
GCTTCTATATATTTGTGCTGTTATCCGAACAAGCTATGTCGTATTTTTGT
GACGTGTTTTTTTTCTTTCTCTTGCCTCCGTCTATGCAATCGCCAGGTCT
CGGCCATCGAGCAGGAGTCCATTGACATCGATCCTGACACTAAGGACCTT
CTCGACGCTCTCGACTTCAAGGACTTGGCTGGCGTCGCGGTGTCCGCGGT
GCCCGCCCGTGTCTGATTCCTAGCTGATTTGGGACTCATGTACTGCCGTA
CCTGAGTCCGAGCCGATTTGAGAGTTGAATACTGCTGTGCCTCCGGGACA
AAAAATAATTTGAAAGTTTTTTGGCCGCCGTGGCATCTATGTTCGCGTAG
CATGACCCAGTGCTTTGTTATTTGGCGGTAAGGGTTTAGCCCTTTCCTGC
CATCAAGTTATGCGTGTCGACCATGCGGCACGTGCACCAAGTGTAACCGC
ATGGCGTCGCATACGGGGTTGACCCTAACGTCCCCTCATGTGGACCCTAA
AGGCTTGGAAGTGACTTCAAGAGACGAACTTCTAGGGCTTCACTGAAAAT
AATGGATCCAAACCCATATGAGCCGTCGCACGACACGGGTAATACGCTGG
CAGTTTCTCGCGAAACAGTCTCGACTCTACATTTCAAAAATGTACCGTCA
TCTGTTGACGGCTACACCGCTGCGAGCAGGCAATAATTGCCACAACAACG
GACATTTGCACTCTTCTCGTTTTCGCTGCTATATTCTCTGAAAATCGGCA
GTTTTATTAACCATTCGTTCTAGAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig174:366000..372624-

>mRNA_P-littoralis_Contig174.90.1 ID=mRNA_P-littoralis_Contig174.90.1|Name=mRNA_P-littoralis_Contig174.90.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig174:366000..372624- (Pylaiella littoralis U1_48)
ATGGACTTCCACACGAACAAGCGCGTGTGCGACGAAGTTGCCATCATTCC
GTCAAAGCGGATGCGCAACAAGATCGCTGGCTTTGTCACACACCTCATGA
AGCGTATCCAGAGAGGCCCTGTGAGAGGCATTTCGCTCAAGCTCCAGGAG
GAGGAGCGCGAGAGGCGTATGGACTTCGTGCCGGAGGTCTCGGCCATCGA
GCAGGAGTCCATTGACATCGATCCTGACACTAAGGACCTTCTCGACGCTC
TCGACTTCAAGGACTTGGCTGGCGTCGCGGTGTCCGCGGTGCCCGCCCGT
GTCTGA
back to top