mRNA_P-littoralis_Contig174.56.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.56.1
Unique NamemRNA_P-littoralis_Contig174.56.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig174.56.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 1.310e-78
Identity = 130/154 (84.42%), Postives = 137/154 (88.96%), Query Frame = 3
Query:  363 TMNAV*HTEE*YFPCSPLVCFGPFMQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHTSGHNLDSSSVGTKDLNDKPQVEAAHAVLKRKLTT 824
            T++    T E    C  +V  G + +WRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGIL+MRFRILKLAMTYQKQ RLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQ+TSGHNLDSSSVGTKDLNDKPQVEAAHA LKRKLTT
Sbjct:  281 TVHKKDGTTETLKGCYLIVDNG-YHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQNTSGHNLDSSSVGTKDLNDKPQVEAAHAELKRKLTT 433          
BLAST of mRNA_P-littoralis_Contig174.56.1 vs. uniprot
Match: A0A6H5JZL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL5_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 4.240e-52
Identity = 90/130 (69.23%), Postives = 102/130 (78.46%), Query Frame = 3
Query:  441 WRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHT--SGHNLDSSSVGTKDLNDKPQVEAAHAVLKRKLTT 824
            W++LIEPSKYPLSE DLLF KRLESVRKDVECFFGIL+ RFRILKLAM YQ Q R+D VFFTCCILHNMLHT DGM  L E+ NW+ SA +  T  +    D  SVGTKD+ND+PQ+E  H V KR+LTT
Sbjct:   18 WQILIEPSKYPLSENDLLFLKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWISSAGVGATLATEPEADCGSVGTKDVNDQPQLEIGHTVRKRQLTT 147          
BLAST of mRNA_P-littoralis_Contig174.56.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 6.020e-52
Identity = 97/142 (68.31%), Postives = 109/142 (76.76%), Query Frame = 3
Query:  405 CSPLVCFGPFMQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHTS--GHNLDSSSVGTKDLNDKPQVEAAHAVLKRKLTT 824
            C  LV  G + +W++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGIL+ R RIL LAM +Q Q R+D VFFTCCILHNMLHT DGM  L E+ NWV SA +  TS      DS SVGTKD+N +PQVEA HAV KR+LTT
Sbjct:  126 CYVLVDNG-YHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTSVTEPEADSGSVGTKDVNGRPQVEAGHAVRKRQLTT 266          
BLAST of mRNA_P-littoralis_Contig174.56.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.290e-50
Identity = 91/133 (68.42%), Postives = 104/133 (78.20%), Query Frame = 3
Query:  432 FMQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHT--SGHNLDSSSVGTKDLNDKPQVEAAHAVLKRKLTT 824
            + +W++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGIL+ RFRILKLAM YQ Q R+D VFFTCCILHNMLHT DGM  L E+ NWV SA +  T  +    D  S GTKD+ND+PQ+E  H V KR+LTT
Sbjct:  179 YHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTLATEPEADCGSFGTKDVNDQPQLEIGHTVRKRQLTT 311          
BLAST of mRNA_P-littoralis_Contig174.56.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 1.360e-48
Identity = 95/142 (66.90%), Postives = 108/142 (76.06%), Query Frame = 3
Query:  405 CSPLVCFGPFMQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHT--SGHNLDSSSVGTKDLNDKPQVEAAHAVLKRKLTT 824
            C  LV  G + +W++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGIL+ RFRILKLAM YQ Q R+D VFFTC ILHNMLHT DGM  L E+ NWV SA +  T  +    D  SVGTKD+ND+PQ+E  H V KR+LTT
Sbjct:  281 CYLLVDNG-YHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAGVGATLTTEPEADCGSVGTKDVNDQPQLEIEHTVRKRQLTT 421          
BLAST of mRNA_P-littoralis_Contig174.56.1 vs. uniprot
Match: A0A6H5JXJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ4_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.190e-40
Identity = 76/117 (64.96%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  453 IEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQH--TSGHNLDSSSVGTKDLNDKPQVEAAH 797
            +EP+KYPLSE D+LFSKRLESVRKDVECFFGIL+ RFRILKL M Y +Q R+D VFFTCCILHNMLH  DGM  L E+  WV  A       +    DSS VG KD NDK QVE  H
Sbjct:    1 MEPTKYPLSENDILFSKRLESVRKDVECFFGILKGRFRILKLVMAYHEQERIDNVFFTCCILHNMLHIFDGMDQLVENTLWVSGAGAGTGVATEQEADSSFVGAKDTNDKEQVEKGH 117          
BLAST of mRNA_P-littoralis_Contig174.56.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 6.360e-38
Identity = 80/133 (60.15%), Postives = 96/133 (72.18%), Query Frame = 3
Query:  432 FMQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHTSGHNL--DSSSVGTKDLNDKPQVEAAHAVLKRKLTT 824
            + +W++LIEPSKYPLSE DLLFSKRL+SVR+D     GIL+ RFRILKLAM YQ Q R+D VFFTCCI+HNMLHT DGM  L E+   V SA +  T    L  D  SVG +D+ND+PQ+E    V KR+LTT
Sbjct:  310 YHKWQILIEPSKYPLSENDLLFSKRLDSVRRDGSASDGILKGRFRILKLAMAYQSQERIDDVFFTCCIMHNMLHTFDGMDQLVENTIRVSSAGVGATLATELEADCGSVGRRDVNDQPQLEIGRTVRKRQLTT 442          
BLAST of mRNA_P-littoralis_Contig174.56.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 7.050e-38
Identity = 78/126 (61.90%), Postives = 92/126 (73.02%), Query Frame = 3
Query:  405 CSPLVCFGPFMQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQH--TSGHNLDSSSVGTKDLNDK 776
            C  LV  G + +W++L+EP+KYPLSE D+LFSKRLESVRKDVECFFGIL+  FRI K+AM Y +Q R+D VFFTCCILHNMLHT DGM  L E+  WV SA       +    DSS+VG KD NDK
Sbjct:  266 CYLLVDNG-YHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSAGAGTGVATEQEADSSTVGAKDTNDK 390          
BLAST of mRNA_P-littoralis_Contig174.56.1 vs. uniprot
Match: A0A6H5JKX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKX3_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 3.410e-36
Identity = 78/167 (46.71%), Postives = 102/167 (61.08%), Query Frame = 2
Query:  149 GSLGPTNDKTICC-DEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKVKKCKVPHVAVGLTCDNERGMTHRRVIFPLLSFGLFRSFHAVADAH*TLEVPVERG*LAVLEEAGERAQGCGVFFRHPEDALQNPEARHDLPEAVSPRLRLLHMLYPAQH 646
            G  G TNDKTI C D AV++IRTDKQY ++ F V+ +DGTT TLKGCYL+VDNGYHK K      V + LT   +  ++   ++F             V   + T + P ER   +  EEAGERAQG G+  RHPE +LQ+PEARH +P A + R R+ H+L+  QH
Sbjct:  140 GFTGSTNDKTIVCWDAAVEKIRTDKQYTKQTFDVYNEDGTTTTLKGCYLLVDNGYHKWK------VLMELT---KHPLSENNILFX------------VESPNGTHQAPAEREQHSFFEEAGERAQGRGMLLRHPEGSLQDPEARHGVPRAGAHRQRVFHVLHLEQH 285          
BLAST of mRNA_P-littoralis_Contig174.56.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 3.970e-36
Identity = 72/121 (59.50%), Postives = 87/121 (71.90%), Query Frame = 3
Query:  405 CSPLVCFGPFMQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHTSGHN--LDSSSVGTK 761
            C  LV  G + +W  LI PSKYP+ + DL FSKRLESVRKDVECFFGI++  FRILKL++ Y KQ  +D VFFTCCILHNMLH++D    +EE+ NW G+A L +   HN  LD SSVG K
Sbjct:   83 CYLLVDNG-YHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAK 202          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE1.310e-7884.42Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZL5_9PHAE4.240e-5269.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI6.020e-5268.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUX7_9PHAE1.290e-5068.42DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KNX4_9PHAE1.360e-4866.90DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JXJ4_9PHAE1.190e-4064.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0X4_9PHAE6.360e-3860.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE7.050e-3861.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKX3_9PHAE3.410e-3646.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE3.970e-3659.50DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:251921..252744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size826
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.23e-54
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size390
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789838.472327-UTR-P-littoralis_Contig174:251920..2523541680789838.472327-UTR-P-littoralis_Contig174:251920..252354Pylaiella littoralis U1_48UTRP-littoralis_Contig174 251921..252354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789838.4834533-CDS-P-littoralis_Contig174:252354..2527441680789838.4834533-CDS-P-littoralis_Contig174:252354..252744Pylaiella littoralis U1_48CDSP-littoralis_Contig174 252355..252744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.56.1prot_P-littoralis_Contig174.56.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 252355..252744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.56.1

>prot_P-littoralis_Contig174.56.1 ID=prot_P-littoralis_Contig174.56.1|Name=mRNA_P-littoralis_Contig174.56.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAM
TYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHTSGHN
LDSSSVGTKDLNDKPQVEAAHAVLKRKLTT
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mRNA from alignment at P-littoralis_Contig174:251921..252744+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.56.1 ID=mRNA_P-littoralis_Contig174.56.1|Name=mRNA_P-littoralis_Contig174.56.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=824bp|location=Sequence derived from alignment at P-littoralis_Contig174:251921..252744+ (Pylaiella littoralis U1_48)
GCAATGGGTTCAACGGACGTCACCCATATCGGGTGGAGTAGGTGCCCGTA CAACCAAGGACGTTCTTACACCGGTAAGGAATGCAAGCCTACGGTCGGAT ACCAGGTGACGGTCAACCACGCTGAGCGTGTGCTGGCCGTGACAGAGGGG TTCACTGGGTCCCACCAACGACAAGACCATCTGCTGTGATGAAGCGGTAG ACAGAATTCGGACCGACAAGCAGTACGCCGAAAAACCATTCACAGTCCAC AAAAAGGATGGTACCACGGAAACCCTGAAGGGGTGCTACCTCATCGTCGA CAATGGTTACCACAAGGTGAAAAAATGTAAAGTACCACACGTTGCCGTGG GTTTGACGTGCGACAATGAACGCGGTATGACACACAGAAGAGTAATATTT CCCCTGCTCTCCTTTGGTTTGTTTCGGTCCTTTCATGCAGTGGCGGATGC TCATTGAACCCTCGAAGTACCCGTTGAGCGAGGCTGACTTGCTGTTCTCG AAGAGGCTGGAGAGCGTGCGCAAGGATGTGGAGTGTTTTTTCGGCATCCT GAGGATGCGCTTCAGAATCCTGAAGCTCGCCATGACCTACCAGAAGCAGT ATCGCCTCGACTACGTCTTCTTCACATGCTGTATCCTGCACAACATGCTC CATACGCATGACGGCATGGGCGGCCTGGAGGAGGACGTGAACTGGGTCGG CAGTGCCGAGCTCCAGCACACGTCGGGGCACAACCTGGACTCGAGCTCGG TCGGGACCAAGGACCTCAACGACAAGCCCCAGGTCGAGGCCGCCCATGCG GTGCTCAAGCGGAAGCTGACCACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:251921..252744+

>mRNA_P-littoralis_Contig174.56.1 ID=mRNA_P-littoralis_Contig174.56.1|Name=mRNA_P-littoralis_Contig174.56.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig174:251921..252744+ (Pylaiella littoralis U1_48)
ATGCAGTGGCGGATGCTCATTGAACCCTCGAAGTACCCGTTGAGCGAGGC
TGACTTGCTGTTCTCGAAGAGGCTGGAGAGCGTGCGCAAGGATGTGGAGT
GTTTTTTCGGCATCCTGAGGATGCGCTTCAGAATCCTGAAGCTCGCCATG
ACCTACCAGAAGCAGTATCGCCTCGACTACGTCTTCTTCACATGCTGTAT
CCTGCACAACATGCTCCATACGCATGACGGCATGGGCGGCCTGGAGGAGG
ACGTGAACTGGGTCGGCAGTGCCGAGCTCCAGCACACGTCGGGGCACAAC
CTGGACTCGAGCTCGGTCGGGACCAAGGACCTCAACGACAAGCCCCAGGT
CGAGGCCGCCCATGCGGTGCTCAAGCGGAAGCTGACCACG
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