mRNA_P-littoralis_Contig174.53.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.53.3
Unique NamemRNA_P-littoralis_Contig174.53.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 468 bits (1203), Expect = 2.990e-156
Identity = 243/253 (96.05%), Postives = 243/253 (96.05%), Query Frame = 1
Query:  109 MSAAAEGRVKDLHPEVALAAALAALDDIQQDDMLSDAEAEPDEXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATAQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKECKPTVGYQVTVNHAGRVLAVTEGFTGS 867
            MSAAAEGRVKDLHPEVALAAALAALDDIQQDDMLSDAE     XXXXXXXXXX   KNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFAT QRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKE KPTVGYQVTVNHAGRVLAVTEGFTGS
Sbjct:    1 MSAAAEGRVKDLHPEVALAAALAALDDIQQDDMLSDAEXXXXXXXXXXXXXXXXXXKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGS 253          
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 5.280e-123
Identity = 219/412 (53.16%), Postives = 270/412 (65.53%), Query Frame = 1
Query:  121 AEGRVKD--LHPEVALAAALAALDDIQQDDMLSDAEAEPDEXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATAQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKECKPTVGYQVTVNHAGRVLAVTEGFTGSHQRQDHLL**SGRQN--SDRQAVRRKTIH--------SPQKGWYHGNPEGVLPHRRQWLPQVADAH*TLEVPVERG*LAVLEEAGERAQGCGVFFRHPEDALQNPEARHDLPEAVSPRLRLLHMLYPAQHAPYA*RHGRPGGGRELGRQCRAPAHVGAQPG 1320
            AE  V D  L P  ALA AL ALD++Q++D+  + E    +          ++RK     CAWA++LED+DL++  S  +K+FR DFRVP  FFLRLV LVK K+WFATA  DA GR+ HPVEHKVLA LTILGRGN F SIY +SWMS  TVQ +FH FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHI W++CPYN  RSYTGKE  PT+GYQVTVNHAGR  AVTEGFTGS   +  +   +  +   +D+Q    KT          +  KG Y     G   H+ Q L     AH   +VP ER    + EEAGERA+G G+  RHPE  LQ+PEARH +P A + R R+LH+L+ AQHA +  R+GR GG   +G+QCR   HVG + G
Sbjct:    2 AENGVGDDALLPATALAVALVALDEVQRNDLSQEEEDTAPDLTRPRLSRTQRQRKY-VERCAWARMLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYT-EKTFDVYNEDGTTTTLKGCYLLVDNGY--HKWQIL---MGAH---QVPAERERSPLFEEAGERAEGRGMLLRHPERPLQDPEARHGVPRAGAHRQRVLHVLHLAQHAAHLRRNGRAGGKHAMGQQCRGGDHVGDRAG 403          
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 303 bits (777), Expect = 1.610e-95
Identity = 152/231 (65.80%), Postives = 175/231 (75.76%), Query Frame = 1
Query:  142 LHPEVALAAALAALDDIQQDDMLSDAEAEPDEXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATAQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKECKPTVGYQVTVNHAGR 834
            L P  ALA AL ALD++Q++D LS  E +             +R++ D  TCAWAQ+LED+DL+D  S  +K+FR DFRVPY FFLRLV LVK K+WF TA  D  GR  HPVEHKVLA LTILGRGN F SIY +SWMS  TVQ +FH+FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHIGWS+CPYN  RSYTGKE  PTVGYQVTVNHAGR
Sbjct:   11 LLPATALAVALVALDEVQRND-LSQEEEDTAPDLPRPRLSRTQRQRKDVKTCAWAQMLEDKDLEDSNSRTSKQFRLDFRVPYSFFLRLVALVKSKNWFVTAGCDGAGRHSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGR 240          
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 4.130e-93
Identity = 143/200 (71.50%), Postives = 165/200 (82.50%), Query Frame = 1
Query:  268 KRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATAQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKECKPTVGYQVTVNHAGRVLAVTEGFTGS 867
            +R++ +   CAWAQ+LED+DL+D  SI++K+FR DFRVP  FFLRLV LVK KDWF T+  DA  R+ HPVEHKVLA LTILGRGN F SIY +SWMS  TVQ +FH+FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHIGWS+CPYN  RSYTGKE  PTVGYQVTVNHAGR +AVTEGFT S
Sbjct:   25 ERKRKEVEKCAWAQMLEDKDLEDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDS 224          
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 6.850e-88
Identity = 144/204 (70.59%), Postives = 161/204 (78.92%), Query Frame = 2
Query:  854 GSLGPTNDKTICC-DEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHT--SGHNLDSSSVGTKDLNDKPQVEAAHAVLKRKLTTNFLYRKKHKKDIVWLFR 1456
            G  G TNDKTI C D AVD+IRTDKQY EK F ++ +DGTT TLKGCY + DNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGIL+ RFRILKLAM YQ Q R+D VFFTCCILHNMLHT DGM  L E+ NWV SA +  T  +    D  S GTKD+ND+PQ+E  H V KR+LTT+F YRKKHKKDIVWL R
Sbjct:  125 GFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTLATEPEADCGSFGTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDIVWLSR 328          
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 3.150e-87
Identity = 143/201 (71.14%), Postives = 162/201 (80.60%), Query Frame = 2
Query:  854 GSLGPTNDKT-ICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHTS--GHNLDSSSVGTKDLNDKPQVEAAHAVLKRKLTTNFLYRKKHKKDIVW 1447
            G  G TNDKT +C D AV++IRTDKQY EK F V+ +DGTT TLKGCY++VDNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGIL+ R RIL LAM +Q Q R+D VFFTCCILHNMLHT DGM  L E+ NWV SA +  TS      DS SVGTKD+N +PQVEA HAV KR+LTT+F YRKKHKKDIV+
Sbjct:   80 GFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTSVTEPEADSGSVGTKDVNGRPQVEAGHAVRKRQLTTSFAYRKKHKKDIVY 280          
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5KFR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR8_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 9.100e-87
Identity = 177/394 (44.92%), Postives = 214/394 (54.31%), Query Frame = 1
Query:  160 LAAALAALD-----DIQQDDMLSDAEAEPDEXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATAQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKECKPTVGYQVTVNHAGRVLAVTEGFTGSHQRQDHLL**SGRQ----------------NSDRQAVRRKTIHSPQKGWYHGNPEGVLPHRRQWLPQ---------VADAH*TLEVPVERG*LAVLEEAGERAQGCGVFFRHPEDALQNPEARHDLPEAVSPRLRLLHMLYPAQHAPYA*RHG 1251
            LA  LAALD     D+ Q D+L + +  PD           +R++ D   CAWAQ+LED+DL D  SI +K+FR DFRVPY FFLRL  LVK KDWF T+  DA GR+ HPVEHKVLA LTILGRGN F SIY +SWMS  T                           N ELD VM QY++LGF G+MGS DVTHIGWS+CPYN  RSYTGKE  P +GYQV V+HAGR +AVTEGFT S   +  +   +  +                N D      K  +      YH     V   R    P          V     T +VP ER   ++ E AGERAQG GV  RHPE +LQ+PEARH +P   + R R+   L+ AQHA +  R+G
Sbjct:   49 LAVTLAALDKVQRNDLSQKDLLEEEDRAPD--LPRPKLNRGQRKRKDVEKCAWAQMLEDKDLDDSNSITSKQFRLDFRVPYSFFLRLGALVKSKDWFTTSGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKT---------------------------NDELDHVMEQYDRLGFSGSMGSMDVTHIGWSKCPYNLARSYTGKEGVPAIGYQVMVSHAGRAIAVTEGFTCSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKLVNSVESKRPSLGPSPFPLSFFFPVEYPDGTHQVPAERERHSLFEGAGERAQGRGVLLRHPEGSLQDPEARHGVPRVGAHRQRVFRELHLAQHAAHLRRNG 413          
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 9.680e-83
Identity = 133/186 (71.51%), Postives = 151/186 (81.18%), Query Frame = 1
Query:  310 VLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATAQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKECKPTVGYQVTVNHAGRVLAVTEGFTGS 867
            +LED+DL+D TSI AK+ R DFRVPY  FLRLV LVK K+WF+TA  DA G   HPVEHKVLA LTILGRGN F SIY +SWMS  TVQ +FH+FC HFA EMYDE I LP+EE+G+LD VM QY++LGF GA+GS DVTHI WSRCPYNQ RSYTGKE  PT+ YQVTV+HAGR +AVTEGFTGS
Sbjct:   26 LLEDKDLEDSTSITAKQLRVDFRVPYTVFLRLVALVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGS 211          
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 8.520e-71
Identity = 126/193 (65.28%), Postives = 147/193 (76.17%), Query Frame = 2
Query:  884 ICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHTSGHNL--DSSSVGTKDLNDKPQVEAAHAVLKRKLTTNFLYRKKHKKDIVWLFR 1456
            +C D AV++IRTDKQY EK F V+ +DGTT TLKG YL+VDNGYHKW++LIEPSKYPLSE DLLFSKRL+SVR+D     GIL+ RFRILKLAM YQ Q R+D VFFTCCI+HNMLHT DGM  L E+   V SA +  T    L  D  SVG +D+ND+PQ+E    V KR+LTT+F YRKKHKKDIVWL R
Sbjct:  267 VCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGWYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLDSVRRDGSASDGILKGRFRILKLAMAYQSQERIDDVFFTCCIMHNMLHTFDGMDQLVENTIRVSSAGVGATLATELEADCGSVGRRDVNDQPQLEIGRTVRKRQLTTSFAYRKKHKKDIVWLSR 459          
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 6.550e-68
Identity = 115/200 (57.50%), Postives = 152/200 (76.00%), Query Frame = 1
Query:  274 RKNDTSTCAWAQVLEDEDL--KDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATAQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKECKPTVGYQVTVNHAGRVLAVTEGFTGS 867
            RK+ T +  W +++E  +    D T+  A++FR +FRVPYPFF+ LVELV+ +DWF T + D  GR+  PVE KVLACL IL RGNVF  IY++S++S  TV   FH+FC++FA E+YDE+++LP+ E+  L +VM QY+++GFPGA+GSTDVTHI W  CPYNQ R YTGKE KPTV +QVTV+H+GRVLAVT GFTG+
Sbjct:  101 RKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGED--LRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGA 298          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE2.990e-15696.05Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI5.280e-12353.16Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5L642_9PHAE1.610e-9565.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE4.130e-9371.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE6.850e-8870.59DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FSK2_ECTSI3.150e-8771.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFR8_9PHAE9.100e-8744.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE9.680e-8371.51DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L0X4_9PHAE8.520e-7165.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE6.550e-6857.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:257173..260393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size2030
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.01e-37
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size888
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789838.350178-UTR-P-littoralis_Contig174:257172..2581811680789838.350178-UTR-P-littoralis_Contig174:257172..258181Pylaiella littoralis U1_48UTRP-littoralis_Contig174 257173..258181 -
1680789838.3599288-UTR-P-littoralis_Contig174:258305..2584321680789838.3599288-UTR-P-littoralis_Contig174:258305..258432Pylaiella littoralis U1_48UTRP-littoralis_Contig174 258306..258432 -
1680789838.3907545-UTR-P-littoralis_Contig174:260387..2603931680789838.3907545-UTR-P-littoralis_Contig174:260387..260393Pylaiella littoralis U1_48UTRP-littoralis_Contig174 260388..260393 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789838.3687603-CDS-P-littoralis_Contig174:258432..2588371680789838.3687603-CDS-P-littoralis_Contig174:258432..258837Pylaiella littoralis U1_48CDSP-littoralis_Contig174 258433..258837 -
1680789838.3800392-CDS-P-littoralis_Contig174:259904..2603871680789838.3800392-CDS-P-littoralis_Contig174:259904..260387Pylaiella littoralis U1_48CDSP-littoralis_Contig174 259905..260387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.53.3prot_P-littoralis_Contig174.53.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 258433..260387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.53.3

>prot_P-littoralis_Contig174.53.3 ID=prot_P-littoralis_Contig174.53.3|Name=mRNA_P-littoralis_Contig174.53.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=296bp
MPARLPSLLLLLLLVVGGQRVASSSSPASSVHPIMSAAAEGRVKDLHPEV
ALAAALAALDDIQQDDMLSDAEAEPDEEPRREKRGRRKRRKNDTSTCAWA
QVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATAQRDA
YGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHF
ATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPY
NQGRSYTGKECKPTVGYQVTVNHAGRVLAVTEGFTGSHQRQDHLL*
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mRNA from alignment at P-littoralis_Contig174:257173..260393-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.53.3 ID=mRNA_P-littoralis_Contig174.53.3|Name=mRNA_P-littoralis_Contig174.53.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=3221bp|location=Sequence derived from alignment at P-littoralis_Contig174:257173..260393- (Pylaiella littoralis U1_48)
AGCGCTATGCCAGCTCGGCTGCCATCACTGCTGCTCCTACTGCTACTTGT GGTGGGTGGTCAGCGTGTTGCTTCATCGTCGTCTCCCGCCAGCAGCGTTC ATCCCATCATGTCCGCAGCAGCAGAGGGCAGAGTCAAAGACCTCCATCCA GAAGTCGCGCTTGCGGCAGCGCTGGCTGCTCTGGATGACATCCAACAGGA TGACATGCTGTCAGATGCCGAGGCCGAACCTGACGAGGAACCCCGGCGCG AGAAGCGCGGTCGAAGGAAGAGAAGGAAGAACGACACCAGCACGTGTGCT TGGGCGCAGGTGCTGGAGGATGAAGACCTAAAGGATCCTACAAGCATAGC GGCGAAGAAGTTTCGAGAGGACTTTCGCGTCCCCTACCCCTTTTTTCTGC GGCTTGTGGAGTTGGTGAAGAAGAAGGATTGGTTCGCCACCGCGCAGCGC GACGCGTATGGGCGGCGATGCCACCCAGTGGAGCACAAAGTGAGCTTGAC GAGGTTGATCACTCGTGGGTTGTGGCTTGTGTACAGCAGTAGTTTTACTG CACTAGCAGACTCGGGGTGCGTTGAATTGAAGGAGGCGATATTCCAAAAT GGATGATACCAAAAAAGTAGCTGATCCTGCTGTAGTATGTTTGTGTGAGA GAGAGAGAGAGAGCGAGAGAGAGACGGAGCTGCTCTCTCTCTTATACTGC TGTTGATGAACCCGCACCTGCTCTCTCTCTCTACTGCTGTTGATAAACCT GTGCAGCAGCAACGACTCTTCTTTTCACTATACAGCAGTACCCGGTACTC CATACAGCAGTATTGGCTACATCTGTCTGGATCGCATCCTAGTGCTGTAC AGCAGTACTGGAATATATTTTTCGTTTGTGTCACATGATGTGATATGATA CAGCAGTCGCCTCTATCGGCTATTTCATACCTTGTACTCCGTAGTACATG CTATATCTGTCTAGATCGGATGTAGAGCTGTAGGCTACAGCAGTAGCTTT TGTATCATATGATATGATACAGCAGTCGCCTTTGTCGGCTACGTCATACC TGGTACTCCGTACAGCAATACAGGGGACATACTCGTATTTTTGGATCCCT TTTTTGTTTGTATCATATGATATGATACAGCAGCCGCCTCTGTCGGCTAT ATCATACCTGGTACCTGGAACTCCGTGCAGCAGTACATCTAAATCTGTCT GGATCGCATTCTAGTGCTGTACAGCAGTAGCTCTTTCAGCAAATATACGA GTAAGTAGTATATACCGCAACAGGACAGTGTCTGGATCACACTAATGGAA TATTTGTATCACAGCGGTGGCCCTGTTGGTTGTGTCATGCAACAGCAGGT GTTCTGTCTGAAACGCCTACTCCTTTGCCTGTTTTGTGCTACGCACGCGC GCCAGGGTAACAAACGTTGCTAATTCGTCTGGAACGCCTACTCCTTTGCC TGTTTTGTGCTACGCACGCGCGCCAGGGTAACAAACCTTGCTAATTCGTC TGCACCCTGCCCCCCCCCCCCCCAACGAACACATGTTGCGAATGGTGCTG CCGTAGGTGCTGGCGTGTCTGACTATACTGGGCAGGGGGAATGTATTCGG AAGCATCTACAACCTTTCGTGGATGAGCACCCCGACAGTGCAGAAGGTGT TCCACCAGTTCTGCGAGCACTTCGCAACCGAGATGTACGACGAGCACATC TTCCTTCCCAGCGAGGAGAACGGCGAGCTGGATCGCGTCATGGGACAGTA CGAGAAGCTGGGGTTCCCGGGCGCAATGGGTTCAACGGACGTCACCCATA TCGGGTGGAGTAGGTGCCCGTACAACCAAGGACGTTCTTACACCGGTAAG GAATGCAAGCCTACGGTCGGATACCAGGTGACGGTCAACCACGCTGGGCG TGTGCTGGCCGTGACAGAGGGGTTCACTGGGTCCCACCAACGACAAGACC ATCTGCTGTGATGAAGCGGTAGACAGAATTCGGACCGACAAGCAGTACGC CGAAAAACCATTCACAGTCCACAAAAAGGATGGTACCACGGAAACCCTGA AGGGGTGCTACCTCATCGTCGACAATGGTTACCACAAGGTGAAAAAATGT AAAGTACCACACGTTGCCGTGGGTTTGACGTGCGACAATGAACGCGGTAT GACACACAGAAGAGTAATATTTCCCCTGCTCTCCTTTGGTTTGTTTCGGT CCTTTCATGCAGTGGCGGATGCTCATTGAACCCTCGAAGTACCCGTTGAG CGAGGCTGACTTGCTGTTCTCGAAGAGGCTGGAGAGCGTGCGCAAGGATG TGGAGTGTTTTTTCGGCATCCTGAGGATGCGCTTCAGAATCCTGAAGCTC GCCATGACCTACCAGAAGCAGTATCGCCTCGACTACGTCTTCTTCACATG CTGTATCCTGCACAACATGCTCCATACGCATGACGGCATGGGCGGCCTGG AGGAGGACGTGAACTGGGTCGGCAGTGCCGAGCTCCAGCACACGTCGGGG CACAACCTGGACTCGAGCTCGGTCGGGACCAAGGACCTCAACGACAAGCC CCAGGTCGAGGCCGCCCATGCGGTGCTCAAGCGGAAGCTGACCACGAACT TCCTGTACCGCAAGAAGCACAAGAAGGACATTGTTTGGCTTTTCAGGAAG AGGCCTGAGATTTAACCGTAGAAATCTGTTGTTCGTTTCCATCTCTTGGG ATGCCGCTTTTCTATTTTTTATCAATTTCGTAAGGGTTACGCGCTGTCGC GTGTGCTGGTGTGCGACGTTTTGTGTCATGTAGTAGGGGAGGAAAGCGTC TACTGTACCAATTCGTGTTTGGCAATGGCAGCGTAGAATACGAAGGAGAC GCGGGTGAAATCTTTTTTTATGATCGTACCGTTCGTTAATTTTTTTTTGT TGTCCCATGTACGCAGAAAGACCAAAATATAACAAAGACGAGCACACACA CAAACAAAAAAGAAGAACGAGCGGAGCAGTAGAAACGACAGGTGTTCACT CCGGTACCAACAGCACCGCATGCTCCAGAAGCAATGTGAAATTCAACAAA GACAAAAACACACAAGTACGGAAAAAAAAAAGTGGTAGACCGGCACTTAC TCTGGTGCAAGCGCCGTACAAAAAAAACAAACAAGCAGAGCAGTAGAAAC GACAGGTGTTTACTCCGGTACCAACAGCACCGCATGCTCCACAAGCAATG TGAAATTCAACAAAGACAAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:257173..260393-

>mRNA_P-littoralis_Contig174.53.3 ID=mRNA_P-littoralis_Contig174.53.3|Name=mRNA_P-littoralis_Contig174.53.3|organism=Pylaiella littoralis U1_48|type=CDS|length=888bp|location=Sequence derived from alignment at P-littoralis_Contig174:257173..260393- (Pylaiella littoralis U1_48)
ATGCCAGCTCGGCTGCCATCACTGCTGCTCCTACTGCTACTTGTGGTGGG
TGGTCAGCGTGTTGCTTCATCGTCGTCTCCCGCCAGCAGCGTTCATCCCA
TCATGTCCGCAGCAGCAGAGGGCAGAGTCAAAGACCTCCATCCAGAAGTC
GCGCTTGCGGCAGCGCTGGCTGCTCTGGATGACATCCAACAGGATGACAT
GCTGTCAGATGCCGAGGCCGAACCTGACGAGGAACCCCGGCGCGAGAAGC
GCGGTCGAAGGAAGAGAAGGAAGAACGACACCAGCACGTGTGCTTGGGCG
CAGGTGCTGGAGGATGAAGACCTAAAGGATCCTACAAGCATAGCGGCGAA
GAAGTTTCGAGAGGACTTTCGCGTCCCCTACCCCTTTTTTCTGCGGCTTG
TGGAGTTGGTGAAGAAGAAGGATTGGTTCGCCACCGCGCAGCGCGACGCG
TATGGGCGGCGATGCCACCCAGTGGAGCACAAAGTGCTGGCGTGTCTGAC
TATACTGGGCAGGGGGAATGTATTCGGAAGCATCTACAACCTTTCGTGGA
TGAGCACCCCGACAGTGCAGAAGGTGTTCCACCAGTTCTGCGAGCACTTC
GCAACCGAGATGTACGACGAGCACATCTTCCTTCCCAGCGAGGAGAACGG
CGAGCTGGATCGCGTCATGGGACAGTACGAGAAGCTGGGGTTCCCGGGCG
CAATGGGTTCAACGGACGTCACCCATATCGGGTGGAGTAGGTGCCCGTAC
AACCAAGGACGTTCTTACACCGGTAAGGAATGCAAGCCTACGGTCGGATA
CCAGGTGACGGTCAACCACGCTGGGCGTGTGCTGGCCGTGACAGAGGGGT
TCACTGGGTCCCACCAACGACAAGACCATCTGCTGTGA
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