mRNA_P-littoralis_Contig174.53.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 468 bits (1203), Expect = 2.990e-156 Identity = 243/253 (96.05%), Postives = 243/253 (96.05%), Query Frame = 1
Query: 109 MSAAAEGRVKDLHPEVALAAALAALDDIQQDDMLSDAEAEPDEXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATAQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKECKPTVGYQVTVNHAGRVLAVTEGFTGS 867
MSAAAEGRVKDLHPEVALAAALAALDDIQQDDMLSDAE XXXXXXXXXX KNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFAT QRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKE KPTVGYQVTVNHAGRVLAVTEGFTGS
Sbjct: 1 MSAAAEGRVKDLHPEVALAAALAALDDIQQDDMLSDAEXXXXXXXXXXXXXXXXXXKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGS 253
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI) HSP 1 Score: 380 bits (977), Expect = 5.280e-123 Identity = 219/412 (53.16%), Postives = 270/412 (65.53%), Query Frame = 1
Query: 121 AEGRVKD--LHPEVALAAALAALDDIQQDDMLSDAEAEPDEXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATAQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKECKPTVGYQVTVNHAGRVLAVTEGFTGSHQRQDHLL**SGRQN--SDRQAVRRKTIH--------SPQKGWYHGNPEGVLPHRRQWLPQVADAH*TLEVPVERG*LAVLEEAGERAQGCGVFFRHPEDALQNPEARHDLPEAVSPRLRLLHMLYPAQHAPYA*RHGRPGGGRELGRQCRAPAHVGAQPG 1320
AE V D L P ALA AL ALD++Q++D+ + E + ++RK CAWA++LED+DL++ S +K+FR DFRVP FFLRLV LVK K+WFATA DA GR+ HPVEHKVLA LTILGRGN F SIY +SWMS TVQ +FH FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHI W++CPYN RSYTGKE PT+GYQVTVNHAGR AVTEGFTGS + + + + +D+Q KT + KG Y G H+ Q L AH +VP ER + EEAGERA+G G+ RHPE LQ+PEARH +P A + R R+LH+L+ AQHA + R+GR GG +G+QCR HVG + G
Sbjct: 2 AENGVGDDALLPATALAVALVALDEVQRNDLSQEEEDTAPDLTRPRLSRTQRQRKY-VERCAWARMLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYT-EKTFDVYNEDGTTTTLKGCYLLVDNGY--HKWQIL---MGAH---QVPAERERSPLFEEAGERAEGRGMLLRHPERPLQDPEARHGVPRAGAHRQRVLHVLHLAQHAAHLRRNGRAGGKHAMGQQCRGGDHVGDRAG 403
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE) HSP 1 Score: 303 bits (777), Expect = 1.610e-95 Identity = 152/231 (65.80%), Postives = 175/231 (75.76%), Query Frame = 1
Query: 142 LHPEVALAAALAALDDIQQDDMLSDAEAEPDEXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATAQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKECKPTVGYQVTVNHAGR 834
L P ALA AL ALD++Q++D LS E + +R++ D TCAWAQ+LED+DL+D S +K+FR DFRVPY FFLRLV LVK K+WF TA D GR HPVEHKVLA LTILGRGN F SIY +SWMS TVQ +FH+FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHIGWS+CPYN RSYTGKE PTVGYQVTVNHAGR
Sbjct: 11 LLPATALAVALVALDEVQRND-LSQEEEDTAPDLPRPRLSRTQRQRKDVKTCAWAQMLEDKDLEDSNSRTSKQFRLDFRVPYSFFLRLVALVKSKNWFVTAGCDGAGRHSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGR 240
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 303 bits (775), Expect = 4.130e-93 Identity = 143/200 (71.50%), Postives = 165/200 (82.50%), Query Frame = 1
Query: 268 KRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATAQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKECKPTVGYQVTVNHAGRVLAVTEGFTGS 867
+R++ + CAWAQ+LED+DL+D SI++K+FR DFRVP FFLRLV LVK KDWF T+ DA R+ HPVEHKVLA LTILGRGN F SIY +SWMS TVQ +FH+FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHIGWS+CPYN RSYTGKE PTVGYQVTVNHAGR +AVTEGFT S
Sbjct: 25 ERKRKEVEKCAWAQMLEDKDLEDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDS 224
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE) HSP 1 Score: 287 bits (734), Expect = 6.850e-88 Identity = 144/204 (70.59%), Postives = 161/204 (78.92%), Query Frame = 2
Query: 854 GSLGPTNDKTICC-DEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHT--SGHNLDSSSVGTKDLNDKPQVEAAHAVLKRKLTTNFLYRKKHKKDIVWLFR 1456
G G TNDKTI C D AVD+IRTDKQY EK F ++ +DGTT TLKGCY + DNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGIL+ RFRILKLAM YQ Q R+D VFFTCCILHNMLHT DGM L E+ NWV SA + T + D S GTKD+ND+PQ+E H V KR+LTT+F YRKKHKKDIVWL R
Sbjct: 125 GFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTLATEPEADCGSFGTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDIVWLSR 328
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI) HSP 1 Score: 284 bits (726), Expect = 3.150e-87 Identity = 143/201 (71.14%), Postives = 162/201 (80.60%), Query Frame = 2
Query: 854 GSLGPTNDKT-ICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHTS--GHNLDSSSVGTKDLNDKPQVEAAHAVLKRKLTTNFLYRKKHKKDIVW 1447
G G TNDKT +C D AV++IRTDKQY EK F V+ +DGTT TLKGCY++VDNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGIL+ R RIL LAM +Q Q R+D VFFTCCILHNMLHT DGM L E+ NWV SA + TS DS SVGTKD+N +PQVEA HAV KR+LTT+F YRKKHKKDIV+
Sbjct: 80 GFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTSVTEPEADSGSVGTKDVNGRPQVEAGHAVRKRQLTTSFAYRKKHKKDIVY 280
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5KFR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR8_9PHAE) HSP 1 Score: 288 bits (738), Expect = 9.100e-87 Identity = 177/394 (44.92%), Postives = 214/394 (54.31%), Query Frame = 1
Query: 160 LAAALAALD-----DIQQDDMLSDAEAEPDEXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATAQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKECKPTVGYQVTVNHAGRVLAVTEGFTGSHQRQDHLL**SGRQ----------------NSDRQAVRRKTIHSPQKGWYHGNPEGVLPHRRQWLPQ---------VADAH*TLEVPVERG*LAVLEEAGERAQGCGVFFRHPEDALQNPEARHDLPEAVSPRLRLLHMLYPAQHAPYA*RHG 1251
LA LAALD D+ Q D+L + + PD +R++ D CAWAQ+LED+DL D SI +K+FR DFRVPY FFLRL LVK KDWF T+ DA GR+ HPVEHKVLA LTILGRGN F SIY +SWMS T N ELD VM QY++LGF G+MGS DVTHIGWS+CPYN RSYTGKE P +GYQV V+HAGR +AVTEGFT S + + + + N D K + YH V R P V T +VP ER ++ E AGERAQG GV RHPE +LQ+PEARH +P + R R+ L+ AQHA + R+G
Sbjct: 49 LAVTLAALDKVQRNDLSQKDLLEEEDRAPD--LPRPKLNRGQRKRKDVEKCAWAQMLEDKDLDDSNSITSKQFRLDFRVPYSFFLRLGALVKSKDWFTTSGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKT---------------------------NDELDHVMEQYDRLGFSGSMGSMDVTHIGWSKCPYNLARSYTGKEGVPAIGYQVMVSHAGRAIAVTEGFTCSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKLVNSVESKRPSLGPSPFPLSFFFPVEYPDGTHQVPAERERHSLFEGAGERAQGRGVLLRHPEGSLQDPEARHGVPRVGAHRQRVFRELHLAQHAAHLRRNG 413
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 277 bits (709), Expect = 9.680e-83 Identity = 133/186 (71.51%), Postives = 151/186 (81.18%), Query Frame = 1
Query: 310 VLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATAQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKECKPTVGYQVTVNHAGRVLAVTEGFTGS 867
+LED+DL+D TSI AK+ R DFRVPY FLRLV LVK K+WF+TA DA G HPVEHKVLA LTILGRGN F SIY +SWMS TVQ +FH+FC HFA EMYDE I LP+EE+G+LD VM QY++LGF GA+GS DVTHI WSRCPYNQ RSYTGKE PT+ YQVTV+HAGR +AVTEGFTGS
Sbjct: 26 LLEDKDLEDSTSITAKQLRVDFRVPYTVFLRLVALVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGS 211
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE) HSP 1 Score: 246 bits (629), Expect = 8.520e-71 Identity = 126/193 (65.28%), Postives = 147/193 (76.17%), Query Frame = 2
Query: 884 ICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHTSGHNL--DSSSVGTKDLNDKPQVEAAHAVLKRKLTTNFLYRKKHKKDIVWLFR 1456
+C D AV++IRTDKQY EK F V+ +DGTT TLKG YL+VDNGYHKW++LIEPSKYPLSE DLLFSKRL+SVR+D GIL+ RFRILKLAM YQ Q R+D VFFTCCI+HNMLHT DGM L E+ V SA + T L D SVG +D+ND+PQ+E V KR+LTT+F YRKKHKKDIVWL R
Sbjct: 267 VCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGWYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLDSVRRDGSASDGILKGRFRILKLAMAYQSQERIDDVFFTCCIMHNMLHTFDGMDQLVENTIRVSSAGVGATLATELEADCGSVGRRDVNDQPQLEIGRTVRKRQLTTSFAYRKKHKKDIVWLSR 459
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 240 bits (612), Expect = 6.550e-68 Identity = 115/200 (57.50%), Postives = 152/200 (76.00%), Query Frame = 1
Query: 274 RKNDTSTCAWAQVLEDEDL--KDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATAQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKECKPTVGYQVTVNHAGRVLAVTEGFTGS 867
RK+ T + W +++E + D T+ A++FR +FRVPYPFF+ LVELV+ +DWF T + D GR+ PVE KVLACL IL RGNVF IY++S++S TV FH+FC++FA E+YDE+++LP+ E+ L +VM QY+++GFPGA+GSTDVTHI W CPYNQ R YTGKE KPTV +QVTV+H+GRVLAVT GFTG+
Sbjct: 101 RKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGED--LRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGA 298 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.53.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig174.53.3 >prot_P-littoralis_Contig174.53.3 ID=prot_P-littoralis_Contig174.53.3|Name=mRNA_P-littoralis_Contig174.53.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=296bp MPARLPSLLLLLLLVVGGQRVASSSSPASSVHPIMSAAAEGRVKDLHPEVback to top mRNA from alignment at P-littoralis_Contig174:257173..260393- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig174.53.3 ID=mRNA_P-littoralis_Contig174.53.3|Name=mRNA_P-littoralis_Contig174.53.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=3221bp|location=Sequence derived from alignment at P-littoralis_Contig174:257173..260393- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig174:257173..260393- >mRNA_P-littoralis_Contig174.53.3 ID=mRNA_P-littoralis_Contig174.53.3|Name=mRNA_P-littoralis_Contig174.53.3|organism=Pylaiella littoralis U1_48|type=CDS|length=888bp|location=Sequence derived from alignment at P-littoralis_Contig174:257173..260393- (Pylaiella littoralis U1_48)back to top |