mRNA_P-littoralis_Contig174.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI) HSP 1 Score: 167 bits (423), Expect = 1.060e-50 Identity = 80/142 (56.34%), Postives = 106/142 (74.65%), Query Frame = 1
Query: 1 LVDAREKTHVTQKASAYDHRSKEEEGCDPDGCKADFTRDQDQSDDSRWSCQEDLMDDNCEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEVGY 426
LVDAR++T V + A+AYD R+ E GCDPDGCKA TRDQ D+SRWSC E L D C+I Y+F+EPQDIVR+ ++FYKGDER RTLK+ +DGF + + SSG S +E +D++T + WL++E L +D DEW+SITEV +
Sbjct: 4 LVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRF 145
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: A0A6H5L4E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E8_9PHAE) HSP 1 Score: 132 bits (331), Expect = 6.510e-33 Identity = 69/140 (49.29%), Postives = 91/140 (65.00%), Query Frame = 1
Query: 1 LVDAREKTHVTQKASAYDHRSKEEEGCDPDGCKADFTRDQDQSDDSRWSCQEDLMDDNCEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEV 420
LVDAR++T V + A+AYD R+ E GCDPDGCKA FTRD+ D+SRWSC E L D C I Y F+EPQDIVR+ + N F++I+ SSG S +E +D++T + WL++E L +D DEW+SITEV
Sbjct: 608 LVDARKRTAVKKWANAYDDRTSEYGGCDPDGCKASFTRDRSWKDESRWSCSEKLEDAQCNITYNFEEPQDIVRIKI----------------NGEFKKIITSSGTSSTYETWDINTDETKWLSMEALNLDDDEWISITEV 731
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 6.700e-20 Identity = 60/149 (40.27%), Postives = 83/149 (55.70%), Query Frame = 1
Query: 1 LVDAREKTHVTQKASAYDHRSKE---EEGCDPDGCKADFTRDQ--DQSDDSRWSCQEDLMDDN--CEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEVGY 426
V+A KT V A+AYD R E + GC GC D D ++ +SRWSC E+++ D CEI + FD PQDI + V F+KGDER+RTLK+ N ES S F F + G +T+E +G+D D+W+S+ EV +
Sbjct: 251 FVEAGSKTTVGVTATAYDDRPGESAGDVGCGEMGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEISFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGST-FNSFGIQENGVHTVTMESVGIDRDDWISLLEVRF 398
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: D7G277_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 6.990e-20 Identity = 59/150 (39.33%), Postives = 86/150 (57.33%), Query Frame = 1
Query: 4 VDAREKTHVTQKASAYDHRSKEEEGCDPDGCKADFTRDQDQSDDSRWSCQEDLMD-------DNCEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVD----TRGSSWLTLEGLGMDGDEWLSITEV 420
V+A E T VT +A+D R+ +++GC PDGC + TRD D +D+SRWSC L++ + C++ +E E Q + + V F KGD R+RTL I N ++V S G + G E F++D G L +E G+ DE+LSI EV
Sbjct: 248 VEAGEVTTVTVTTNAFDART-DDDGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQVMFELGEAQLVTSVSVAFLKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEV 396
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: D8LCQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ5_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 1.120e-16 Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 1
Query: 91 GCKADFTRDQ--DQSDDSRWSCQEDLMDDN--CEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEVGY 426
GC D D ++ +SRWSC E+++ D CEI + FD PQDI + V F+KGDER+RTLK+ N ES S F F + G + +E +G+D D+W+S+ EV +
Sbjct: 2 GCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGST-FNSFGIQENGVHTVAMESVGIDADDWISLLEVRF 116
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 4.970e-16 Identity = 56/147 (38.10%), Postives = 81/147 (55.10%), Query Frame = 1
Query: 1 LVDAREKTHVTQKASAYDHRSKE---EEGCDPDGCKADFTRDQDQSD-DSRWSCQEDLMDDN--CEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSN-DGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEV 420
LV+A T + A+ +D R + + GC GC D D +SRWSC ED++ D CEI++ F PQ++ +L V F+KG+ER+RTLK+ N + F + G + FDV +TLE LG+D DEW+S+ EV
Sbjct: 191 LVNAATITAIAASATGFDERPGQASGDHGCGKYGCLPVLATDGITDDVESRWSCAEDIVPDGGQCEIEFTFSHPQNLKQLQVDFWKGEERTRTLKVKINGEKFGEFDSHPGSVTSY--FDVIAYDVHTVTLESLGLDTDEWISLLEV 335
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 2.430e-13 Identity = 55/148 (37.16%), Postives = 82/148 (55.41%), Query Frame = 1
Query: 4 VDAREKTHVTQKASAYD---HRSKEEEGCDP---DGCKADFTRDQDQSD-DSRWSCQEDLMDDN--CEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEV 420
V+ KT V+ A+A+D RS E GC +GC A+ RD ++ +SRWSC L+DD C+I++ F EPQ+IV + V F+KG+ER RTL++ N ES S F V ++ + LE + + +EW+S+ EV
Sbjct: 154 VEVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEVYVNGELTHTHESYADST-FNTLGVTANEANTVMLESVSLLSNEWISLIEV 300
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 1.730e-12 Identity = 59/152 (38.82%), Postives = 83/152 (54.61%), Query Frame = 1
Query: 1 LVDARE---KTHVTQKASAYDHR---SKEEEGCDPDG---CKADFTRDQDQSD-DSRWSCQEDLMDDN--CEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEV 420
++DA E KT V A+A+D R S ++ GC G C A TRD SD +SRWSC L+ D C+I++ F EPQ++V + V F+KG+ER+RTL + N ES S F V +S + LE + + DEW+S+ EV
Sbjct: 455 VIDAVEVGTKTEVGVSATAHDVRPRSSSDDVGCGQVGGLGCTATNTRDGIVSDIESRWSCATILVPDEGACQIEFSFAEPQNVVDIQVAFWKGNERTRTLWVHVNGELTHTHESYADST-FNTLGVTATEASTVMLESVALLSDEWISLLEV 605
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 2.150e-12 Identity = 55/145 (37.93%), Postives = 79/145 (54.48%), Query Frame = 1
Query: 4 VDAREKTHVTQKASAYDHRSKEEEGCDPDG---CKADFTRDQDQSD-DSRWSCQEDLMDDN--CEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEV 420
V+ KT V ++A+D R ++ GC G C A TRD S+ +SRWSC L+DD C+I++ F EPQ IV + V F+KG+ER+RTL++ N ES + F V S + LE + + DEW+S+ EV
Sbjct: 89 VEVGTKTEVGVSSTAHDVRPGDD-GCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADAT-FNTLGVTATDVSTVMLESVALLSDEWISLIEV 231
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 7.780e-12 Identity = 55/145 (37.93%), Postives = 79/145 (54.48%), Query Frame = 1
Query: 4 VDAREKTHVTQKASAYDHRSKEEEGCDPDG---CKADFTRDQDQSD-DSRWSCQEDLMDDN--CEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEV 420
V+ KT V ++A+D R ++ GC G C A TRD S+ +SRWSC L+DD C+I++ F EPQ IV + V F+KG+ER+RTL++ N ES + F V S + LE + + DEW+S+ EV
Sbjct: 340 VEVGTKTEVGVSSTAHDVRPGDD-GCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADAT-FNTLGVTATDVSTVMLESVALLSDEWISLIEV 482 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig174.4.1 >prot_P-littoralis_Contig174.4.1 ID=prot_P-littoralis_Contig174.4.1|Name=mRNA_P-littoralis_Contig174.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=142bp LVDAREKTHVTQKASAYDHRSKEEEGCDPDGCKADFTRDQDQSDDSRWSCback to top mRNA from alignment at P-littoralis_Contig174:23529..23954- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig174.4.1 ID=mRNA_P-littoralis_Contig174.4.1|Name=mRNA_P-littoralis_Contig174.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig174:23529..23954- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig174:23529..23954- >mRNA_P-littoralis_Contig174.4.1 ID=mRNA_P-littoralis_Contig174.4.1|Name=mRNA_P-littoralis_Contig174.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig174:23529..23954- (Pylaiella littoralis U1_48)back to top |