mRNA_P-littoralis_Contig174.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.4.1
Unique NamemRNA_P-littoralis_Contig174.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.060e-50
Identity = 80/142 (56.34%), Postives = 106/142 (74.65%), Query Frame = 1
Query:    1 LVDAREKTHVTQKASAYDHRSKEEEGCDPDGCKADFTRDQDQSDDSRWSCQEDLMDDNCEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEVGY 426
            LVDAR++T V + A+AYD R+ E  GCDPDGCKA  TRDQ   D+SRWSC E L D  C+I Y+F+EPQDIVR+ ++FYKGDER RTLK+  +DGF + + SSG S  +E +D++T  + WL++E L +D DEW+SITEV +
Sbjct:    4 LVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRF 145          
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: A0A6H5L4E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E8_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 6.510e-33
Identity = 69/140 (49.29%), Postives = 91/140 (65.00%), Query Frame = 1
Query:    1 LVDAREKTHVTQKASAYDHRSKEEEGCDPDGCKADFTRDQDQSDDSRWSCQEDLMDDNCEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEV 420
            LVDAR++T V + A+AYD R+ E  GCDPDGCKA FTRD+   D+SRWSC E L D  C I Y F+EPQDIVR+ +                N  F++I+ SSG S  +E +D++T  + WL++E L +D DEW+SITEV
Sbjct:  608 LVDARKRTAVKKWANAYDDRTSEYGGCDPDGCKASFTRDRSWKDESRWSCSEKLEDAQCNITYNFEEPQDIVRIKI----------------NGEFKKIITSSGTSSTYETWDINTDETKWLSMEALNLDDDEWISITEV 731          
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.700e-20
Identity = 60/149 (40.27%), Postives = 83/149 (55.70%), Query Frame = 1
Query:    1 LVDAREKTHVTQKASAYDHRSKE---EEGCDPDGCKADFTRDQ--DQSDDSRWSCQEDLMDDN--CEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEVGY 426
             V+A  KT V   A+AYD R  E   + GC   GC  D   D   ++  +SRWSC E+++ D   CEI + FD PQDI  + V F+KGDER+RTLK+  N       ES   S  F  F +   G   +T+E +G+D D+W+S+ EV +
Sbjct:  251 FVEAGSKTTVGVTATAYDDRPGESAGDVGCGEMGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEISFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGST-FNSFGIQENGVHTVTMESVGIDRDDWISLLEVRF 398          
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: D7G277_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 6.990e-20
Identity = 59/150 (39.33%), Postives = 86/150 (57.33%), Query Frame = 1
Query:    4 VDAREKTHVTQKASAYDHRSKEEEGCDPDGCKADFTRDQDQSDDSRWSCQEDLMD-------DNCEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVD----TRGSSWLTLEGLGMDGDEWLSITEV 420
            V+A E T VT   +A+D R+ +++GC PDGC  + TRD D +D+SRWSC   L++       + C++ +E  E Q +  + V F KGD R+RTL I  N    ++V S G + G E F++D      G   L +E  G+  DE+LSI EV
Sbjct:  248 VEAGEVTTVTVTTNAFDART-DDDGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQVMFELGEAQLVTSVSVAFLKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEV 396          
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: D8LCQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ5_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.120e-16
Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   91 GCKADFTRDQ--DQSDDSRWSCQEDLMDDN--CEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEVGY 426
            GC  D   D   ++  +SRWSC E+++ D   CEI + FD PQDI  + V F+KGDER+RTLK+  N       ES   S  F  F +   G   + +E +G+D D+W+S+ EV +
Sbjct:    2 GCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGST-FNSFGIQENGVHTVAMESVGIDADDWISLLEVRF 116          
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.970e-16
Identity = 56/147 (38.10%), Postives = 81/147 (55.10%), Query Frame = 1
Query:    1 LVDAREKTHVTQKASAYDHRSKE---EEGCDPDGCKADFTRDQDQSD-DSRWSCQEDLMDDN--CEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSN-DGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEV 420
            LV+A   T +   A+ +D R  +   + GC   GC      D    D +SRWSC ED++ D   CEI++ F  PQ++ +L V F+KG+ER+RTLK+  N + F +     G    +  FDV       +TLE LG+D DEW+S+ EV
Sbjct:  191 LVNAATITAIAASATGFDERPGQASGDHGCGKYGCLPVLATDGITDDVESRWSCAEDIVPDGGQCEIEFTFSHPQNLKQLQVDFWKGEERTRTLKVKINGEKFGEFDSHPGSVTSY--FDVIAYDVHTVTLESLGLDTDEWISLLEV 335          
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.430e-13
Identity = 55/148 (37.16%), Postives = 82/148 (55.41%), Query Frame = 1
Query:    4 VDAREKTHVTQKASAYD---HRSKEEEGCDP---DGCKADFTRDQDQSD-DSRWSCQEDLMDDN--CEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEV 420
            V+   KT V+  A+A+D    RS  E GC     +GC A+  RD   ++ +SRWSC   L+DD   C+I++ F EPQ+IV + V F+KG+ER RTL++  N       ES   S  F    V    ++ + LE + +  +EW+S+ EV
Sbjct:  154 VEVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEVYVNGELTHTHESYADST-FNTLGVTANEANTVMLESVSLLSNEWISLIEV 300          
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.730e-12
Identity = 59/152 (38.82%), Postives = 83/152 (54.61%), Query Frame = 1
Query:    1 LVDARE---KTHVTQKASAYDHR---SKEEEGCDPDG---CKADFTRDQDQSD-DSRWSCQEDLMDDN--CEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEV 420
            ++DA E   KT V   A+A+D R   S ++ GC   G   C A  TRD   SD +SRWSC   L+ D   C+I++ F EPQ++V + V F+KG+ER+RTL +  N       ES   S  F    V    +S + LE + +  DEW+S+ EV
Sbjct:  455 VIDAVEVGTKTEVGVSATAHDVRPRSSSDDVGCGQVGGLGCTATNTRDGIVSDIESRWSCATILVPDEGACQIEFSFAEPQNVVDIQVAFWKGNERTRTLWVHVNGELTHTHESYADST-FNTLGVTATEASTVMLESVALLSDEWISLLEV 605          
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.150e-12
Identity = 55/145 (37.93%), Postives = 79/145 (54.48%), Query Frame = 1
Query:    4 VDAREKTHVTQKASAYDHRSKEEEGCDPDG---CKADFTRDQDQSD-DSRWSCQEDLMDDN--CEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEV 420
            V+   KT V   ++A+D R  ++ GC   G   C A  TRD   S+ +SRWSC   L+DD   C+I++ F EPQ IV + V F+KG+ER+RTL++  N       ES   +  F    V     S + LE + +  DEW+S+ EV
Sbjct:   89 VEVGTKTEVGVSSTAHDVRPGDD-GCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADAT-FNTLGVTATDVSTVMLESVALLSDEWISLIEV 231          
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 7.780e-12
Identity = 55/145 (37.93%), Postives = 79/145 (54.48%), Query Frame = 1
Query:    4 VDAREKTHVTQKASAYDHRSKEEEGCDPDG---CKADFTRDQDQSD-DSRWSCQEDLMDDN--CEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIVESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEV 420
            V+   KT V   ++A+D R  ++ GC   G   C A  TRD   S+ +SRWSC   L+DD   C+I++ F EPQ IV + V F+KG+ER+RTL++  N       ES   +  F    V     S + LE + +  DEW+S+ EV
Sbjct:  340 VEVGTKTEVGVSSTAHDVRPGDD-GCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADAT-FNTLGVTATDVSTVMLESVALLSDEWISLIEV 482          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G122_ECTSI1.060e-5056.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4E8_9PHAE6.510e-3349.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8U9_9PHAE6.700e-2040.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G277_ECTSI6.990e-2039.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCQ5_ECTSI1.120e-1639.66Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JFX1_9PHAE4.970e-1638.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G0S3_ECTSI2.430e-1337.16LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FI87_ECTSI1.730e-1238.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5F4_ECTSI2.150e-1237.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4F9_ECTSI7.780e-1237.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:23529..23954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FL48
PFAMsLRR_8
Model size426
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.92e-18
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002200.1
Descriptionregulation of response to stimulus
Cds size426
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789836.015203-CDS-P-littoralis_Contig174:23528..239541680789836.015203-CDS-P-littoralis_Contig174:23528..23954Pylaiella littoralis U1_48CDSP-littoralis_Contig174 23529..23954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.4.1prot_P-littoralis_Contig174.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 23529..23954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.4.1

>prot_P-littoralis_Contig174.4.1 ID=prot_P-littoralis_Contig174.4.1|Name=mRNA_P-littoralis_Contig174.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=142bp
LVDAREKTHVTQKASAYDHRSKEEEGCDPDGCKADFTRDQDQSDDSRWSC
QEDLMDDNCEIKYEFDEPQDIVRLDVQFYKGDERSRTLKITSNDGFRQIV
ESSGHSQGFEEFDVDTRGSSWLTLEGLGMDGDEWLSITEVGY
back to top

mRNA from alignment at P-littoralis_Contig174:23529..23954-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.4.1 ID=mRNA_P-littoralis_Contig174.4.1|Name=mRNA_P-littoralis_Contig174.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig174:23529..23954- (Pylaiella littoralis U1_48)
CTCGTCGACGCGCGGGAGAAGACCCACGTCACCCAAAAGGCCAGCGCCTA CGACCACAGGTCCAAGGAGGAGGAGGGCTGCGACCCCGATGGCTGTAAGG CCGACTTCACGCGCGACCAGGACCAGAGCGACGACTCCCGCTGGAGCTGT CAGGAAGACCTAATGGACGATAATTGCGAGATCAAGTACGAGTTCGACGA GCCCCAAGATATCGTCCGCCTCGACGTGCAGTTCTACAAGGGAGACGAGC GCAGCCGTACGCTCAAGATCACGAGCAACGACGGCTTCCGGCAGATTGTC GAATCCAGCGGGCACAGCCAAGGGTTCGAGGAGTTCGACGTCGACACCCG CGGCTCCTCTTGGCTCACCCTGGAGGGTCTCGGCATGGACGGCGACGAGT GGCTCAGTATCACAGAGGTGGGTTAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig174:23529..23954-

>mRNA_P-littoralis_Contig174.4.1 ID=mRNA_P-littoralis_Contig174.4.1|Name=mRNA_P-littoralis_Contig174.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig174:23529..23954- (Pylaiella littoralis U1_48)
CTCGTCGACGCGCGGGAGAAGACCCACGTCACCCAAAAGGCCAGCGCCTA
CGACCACAGGTCCAAGGAGGAGGAGGGCTGCGACCCCGATGGCTGTAAGG
CCGACTTCACGCGCGACCAGGACCAGAGCGACGACTCCCGCTGGAGCTGT
CAGGAAGACCTAATGGACGATAATTGCGAGATCAAGTACGAGTTCGACGA
GCCCCAAGATATCGTCCGCCTCGACGTGCAGTTCTACAAGGGAGACGAGC
GCAGCCGTACGCTCAAGATCACGAGCAACGACGGCTTCCGGCAGATTGTC
GAATCCAGCGGGCACAGCCAAGGGTTCGAGGAGTTCGACGTCGACACCCG
CGGCTCCTCTTGGCTCACCCTGGAGGGTCTCGGCATGGACGGCGACGAGT
GGCTCAGTATCACAGAGGTGGGTTAC
back to top