mRNA_P-littoralis_Contig174.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.36.1
Unique NamemRNA_P-littoralis_Contig174.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig174.36.1 vs. uniprot
Match: D7FYS0_ECTSI (Tub domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS0_ECTSI)

HSP 1 Score: 485 bits (1248), Expect = 7.530e-158
Identity = 263/391 (67.26%), Postives = 297/391 (75.96%), Query Frame = 1 
Query: 1594 TATKTSKKSDREAASGDENSGGAKPRATTGSWFAAKEEWEDEGESKIYGDTGD-----DXXXDISASDSLSDKIINSRRCHRGESTGMLGGGSPGEGR-GADETVGGGSVGSSSELCWGESSKERQTPARCNSLMLSYERGNNSDLVQCVIVRNRSGMNRLYPQYRFFFEGRVEQLMMAAEKCSKNRTSNYHVFDMKRGGFRARLSKKNGNYLGKVRTNLKRTEATVFTNDQARAERRSEVAELGAISFERPGLVDHLRGGSQPRKFSVLLPALDCNGAPVAHKVDPYDADSDMLSNIKRGRYGNMFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDKLHTVCQFGKASTRYTRIVGEDRFHLDYRAPINAFQAFCIALAQFNF 2748
            TAT   K+  +  A   + + G KPR   G+WFAA+ E +    SK  G+ G+     D     ++ DS SD I++S+R   G+  GM+       GR G DET      G   +  W    +  ++PARC SLMLSYERGNNSDLVQCV+VR+RSGMNRLYPQYRFFFEGR +QLMM A+KCSKNRTSNYHVFDM RGGF+ RLSKKNGNYLGKVRTNLKRTEATVFTNDQ       EVAELGAISFE+PGLVDHLR GSQPRKF+VLLPALDC+G+PVAHKVDPYDADSDMLS +K+GR+GNMFLLQSREPTYT GNYRLNFHGRVTVPSVKNFQLVSPDD LHTVCQFGK        VGEDRFHLDYRAPINAFQA CI++AQFNF
Sbjct:  227 TATAEGKEDSQGTAVSHDKTSGIKPRTAAGAWFAAQGEKKAREGSKRDGNGGESGGERDGVDAAASDDSFSDNIVSSQRRFCGKGEGMV------TGRCGGDETTE--EDGGRGKDSWASIVEGGRSPARCKSLMLSYERGNNSDLVQCVVVRDRSGMNRLYPQYRFFFEGRGDQLMMVAQKCSKNRTSNYHVFDMNRGGFQTRLSKKNGNYLGKVRTNLKRTEATVFTNDQ-------EVAELGAISFEKPGLVDHLRDGSQPRKFTVLLPALDCDGSPVAHKVDPYDADSDMLSRMKQGRHGNMFLLQSREPTYTKGNYRLNFHGRVTVPSVKNFQLVSPDDALHTVCQFGK--------VGEDRFHLDYRAPINAFQALCISIAQFNF 594
[Close]
BLAST of mRNA_P-littoralis_Contig174.36.1 vs. uniprot
Match: A0A835Z9X0_9STRA (Tubby C-terminal-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X0_9STRA)

HSP 1 Score: 302 bits (773), Expect = 7.650e-93
Identity = 150/246 (60.98%), Postives = 185/246 (75.20%), Query Frame = 1 
Query: 2011 LVQCVIVRNRSGMNRLYPQYRFFFEGRVEQLMMAAEKCSKNRTSNYHVFDMKRGGFRARLSKKNGNYLGKVRTNLKRTEATVFTNDQARAERRSEVAELGAISFERPGLVDHLRGGSQPRKFSVLLPALDCNGAPVAHKVDPYDADSDMLSNIKRGRYGNMFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDKLHTVCQFGKASTRYTRIVGEDRFHLDYRAPINAFQAFCIALAQFNF 2748
            ++QCVI+R R G++RLYP Y+ +F+ R + LMMAA+K SK+RTSNYH+FDM RG     LSKK GNYLGKVR+N K+T+ T++TNDQ       E  ELGA+ FE+PGLVDH+  GSQPRKF VLLP +D +  P+ HKVDPYD    M+  +K  R G MFLLQ+++P + NGNYRLNF GRVTVPSVKNFQLV+PDD  + V QFGK        VG+DRFHLD+RAP+NAFQAF IAL+QFNF
Sbjct:    1 MMQCVILRERQGLHRLYPLYKLYFQDR-DTLMMAAQKHSKSRTSNYHIFDMHRGSAARTLSKKGGNYLGKVRSNFKKTDNTIYTNDQ-------EKEELGAVLFEKPGLVDHVMEGSQPRKFYVLLPPIDADSTPIPHKVDPYDPQGPMVELLKARRTGKMFLLQTKDPVFENGNYRLNFRGRVTVPSVKNFQLVAPDDVDYIVGQFGK--------VGDDRFHLDFRAPLNAFQAFAIALSQFNF 230
[Close]
BLAST of mRNA_P-littoralis_Contig174.36.1 vs. uniprot
Match: A0A7S3YIB9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIB9_HETAK)

HSP 1 Score: 280 bits (717), Expect = 1.820e-84
Identity = 139/251 (55.38%), Postives = 178/251 (70.92%), Query Frame = 1 
Query: 1996 GNNSDLVQCVIVRNRSGMNRLYPQYRFFFEGRVEQLMMAAEKCSKNRTSNYHVFDMKRGGFRARLSKKNGNYLGKVRTNLKRTEATVFTNDQARAERRSEVAELGAISFERPGLVDHLRGGSQPRKFSVLLPALDCNGAPVAHKVDPYDADSDMLSNIKRGRYGNMFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDKLHTVCQFGKASTRYTRIVGEDRFHLDYRAPINAFQAFCIALAQFNF 2748
            G  +++V+C +VR+R+G  RLYPQYR +F+   + L + A+K SKNRTSNYH+FDM R GF   LSKKNGNYLGK+R+N K+TE  +FTND        E  ELGAI+FE+ G +D ++ GSQPRK  ++LP LD +G P+ +K +    ++ +LS +K G+ G MF  +S++P +  GNYRLNFHGRVTV SVKNFQLVSPDD  + VCQFGK        V EDRFHLDYRAP NAFQAF + L QFNF
Sbjct:   12 GAGAEMVRCAVVRDRTGARRLYPQYRMYFQD-TDTLALVAQKQSKNRTSNYHIFDMMRAGFGNHLSKKNGNYLGKLRSNSKKTENVIFTNDH-------EKEELGAITFEKTGFMDQVKEGSQPRKLKIILPQLDPDGIPLPNKPERGRPETSLLSRVKIGQTGRMFYFESKDPVFEKGNYRLNFHGRVTVASVKNFQLVSPDDIDYVVCQFGK--------VDEDRFHLDYRAPFNAFQAFAVTLCQFNF 246
[Close]
BLAST of mRNA_P-littoralis_Contig174.36.1 vs. uniprot
Match: A0A7S2V188_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V188_9STRA)

HSP 1 Score: 249 bits (637), Expect = 1.730e-73
Identity = 125/224 (55.80%), Postives = 159/224 (70.98%), Query Frame = 1 
Query: 2077 FFEGRVEQLMMAAEKCSKNRTSNYHVFDMKRGGFRARLSKKNGNYLGKVRTNLKRTEATVFTNDQARAERRSEVAELGAISFERPGLVDHLRGGSQPRKFSVLLPALDCNGAPVAHKVDPYDADSDMLSNIKRGRYGNMFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDKLHTVCQFGKASTRYTRIVGEDRFHLDYRAPINAFQAFCIALAQFNF 2748
            +F+ R +QL+M  +K ++NRT NYH+FDM R  F   LSKKNGNYLGK+RTNL++T+  ++TND       +E  E+GAI F +PG VD ++ GSQPRK  VLLP LD +G PV +K +P   D+ +L  ++  + G MF LQ+++P +  GNYRLNFHGRVTV SVKNFQL SPDD  + VCQFGK        V EDRFHLDYRAP+NAFQAF +AL QFNF
Sbjct:    2 YFQDR-DQLVMVGKKQAQNRTPNYHIFDMTRAQFGNHLSKKNGNYLGKLRTNLRKTDTIIYTND-------AEREEMGAIIFNKPGFVDQVKEGSQPRKLHVLLPQLDADGVPVPNKPNPRRPDTSLLERLRSAKTGKMFCLQTKDPVFEKGNYRLNFHGRVTVASVKNFQLCSPDDIDYVVCQFGK--------VDEDRFHLDYRAPLNAFQAFALALVQFNF 209
[Close]
BLAST of mRNA_P-littoralis_Contig174.36.1 vs. uniprot
Match: A0A7S2GC62_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GC62_9STRA)

HSP 1 Score: 217 bits (552), Expect = 6.570e-61
Identity = 115/263 (43.73%), Postives = 160/263 (60.84%), Query Frame = 1 
Query: 1996 GNNSDLVQCVIVRNRSGMNRLYPQYRFFFEGR----VEQLMMAAEKCSKNRTSNYHVFDMKRGGFRARLSKKNGNYLGKVRTNLKRTEATVFTNDQARAERRSEVAELGAISFERPGLVDHLRGGSQPRKFSVLLPALDCNGAPVAHKV---DPY-----DADSDMLSNIKRGRYGNMFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDKLHTVCQFGKASTRYTRIVGEDRFHLDYRAPINAFQAFCIALAQFNF 2748
            G N  +VQC+IVR+RSG+ RL P+Y  + +G      E+L++ A K +     +YH++++ RG    RL KK GNY+GK++ +  + E  ++ N++ + E       +GA+ F +P ++DH+R G+QPRK  V+LP  D N  P+  K    DPY        SD L    R        L+ +EP + NGNYRLNFHGRVTVPSVKNFQLV P D    +CQFGK        V +DRFHLD++ P+N FQAFC+ALAQFN+
Sbjct:    7 GPNDPMVQCLIVRDRSGLKRLNPEYNLYLQGGRKKGSEKLILIARKQAHKNGCSYHIYNVSRGHMGGRLRKKGGNYVGKLKCSGTKIENVMYNNEEVKDE-------IGAVLFAKPTIMDHMRDGAQPRKLKVVLPPADENSLPIPQKNKFNDPYAGLLGQLQSDQLEEGCR-------QLERKEPVFENGNYRLNFHGRVTVPSVKNFQLVDPRDVADVICQFGK--------VDDDRFHLDFKGPLNPFQAFCVALAQFNY 247
[Close]
BLAST of mRNA_P-littoralis_Contig174.36.1 vs. uniprot
Match: A0A7S2D0G1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D0G1_9STRA)

HSP 1 Score: 217 bits (552), Expect = 3.070e-58
Identity = 115/263 (43.73%), Postives = 160/263 (60.84%), Query Frame = 1 
Query: 1996 GNNSDLVQCVIVRNRSGMNRLYPQYRFFFEGR----VEQLMMAAEKCSKNRTSNYHVFDMKRGGFRARLSKKNGNYLGKVRTNLKRTEATVFTNDQARAERRSEVAELGAISFERPGLVDHLRGGSQPRKFSVLLPALDCNGAPVAHKV---DPY-----DADSDMLSNIKRGRYGNMFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDKLHTVCQFGKASTRYTRIVGEDRFHLDYRAPINAFQAFCIALAQFNF 2748
            G N  +VQC+IVR+RSG+ RL P+Y  + +G      E+L++ A K +     +YH++++ RG    RL KK GNY+GK++ +  + E  ++ N++ + E       +GA+ F +P ++DH+R G+QPRK  V+LP  D N  P+  K    DPY        SD L    R        L+ +EP + NGNYRLNFHGRVTVPSVKNFQLV P D    +CQFGK        V +DRFHLD++ P+N FQAFC+ALAQFN+
Sbjct:  226 GPNDPMVQCLIVRDRSGLKRLNPEYNLYLQGGRKKGSEKLILIARKQAHKNGCSYHIYNVSRGHMGGRLRKKGGNYVGKLKCSGTKIENVMYNNEEVKDE-------IGAVLFAKPTIMDHMRDGAQPRKLKVVLPPADENSLPIPQKNKFNDPYAGLLGQLQSDQLEEGCR-------QLERKEPVFENGNYRLNFHGRVTVPSVKNFQLVDPRDVADVICQFGK--------VDDDRFHLDFKGPLNPFQAFCVALAQFNY 466
[Close]
BLAST of mRNA_P-littoralis_Contig174.36.1 vs. uniprot
Match: A0A7S2H5B0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H5B0_9STRA)

HSP 1 Score: 192 bits (489), Expect = 5.060e-50
Identity = 99/251 (39.44%), Postives = 155/251 (61.75%), Query Frame = 1 
Query: 2011 LVQCVIVRNRSGMNRLYPQYRFFFEGRV----EQLMMAAEKCSKNRTSNYHVFDMKRGGFRARLSKKNGNYLGKVRTNLKRTEATVFTNDQARAERRSEVAELGAISFERPGLVDHLRGGSQPRKFSVLLPALDCNGAPVAHKVDPYDADSDMLSNIKRGRYGN-MFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDKLHTVCQFGKASTRYTRIVGEDRFHLDYRAPINAFQAFCIALAQFNF 2748
            +VQC+IVR R  + R+  +Y+ + +G      E+L++ A K ++ +  +YH++++ RG    RL+KK GNY+GK++ +  + E  ++ N++ + E       +G + F +P ++DH+R G+QPRK  +++P ++    P+   V   D    +L+ I+         + + +EP + NGNYRLNF GRVTVPSVKNFQLVS DD     CQFGK        V +DRFHLD++ P+NAFQAFC+ LAQFN+
Sbjct:  194 MVQCLIVRRRVVLQRI-TEYQLYLQGGRKKGHEKLILVARKQAQKQGCSYHIYNVSRGHLGGRLNKKGGNYVGKLKCSGSKIENVMYNNEEKKQE-------VGGVMFMKPSIMDHMRDGAQPRKLKLIVPPINEKNCPIPQPVKFNDPYGGLLAQIQVDEIEQGCSVFERKEPVFENGNYRLNFRGRVTVPSVKNFQLVSTDDVSDIKCQFGK--------VADDRFHLDFKHPMNAFQAFCVCLAQFNY 428
[Close]
BLAST of mRNA_P-littoralis_Contig174.36.1 vs. uniprot
Match: A0A482S955_9ARCH (Tub domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S955_9ARCH)

HSP 1 Score: 180 bits (457), Expect = 1.020e-47
Identity = 108/266 (40.60%), Postives = 155/266 (58.27%), Query Frame = 1 
Query: 1975 LMLSYERGNNSDLVQCVIVRNRSGMN-RLYPQYRFFFEGRVEQLMMAAEKCSKNRTSNYHVFDMKRGGFRARLSKKNGNYLGKVRT-NLKRTEATVFTNDQARAERRSEVAELGAISFERPGLVDHLRGGSQPRKFSVLLPALDCNGAPVAHKVDPYDADSDMLSNI-------KRGRYGNMFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDKLHTVCQFGKASTRYTRIVGEDRFHLDYRAPINAFQAFCIALAQFN 2745
            +++++ RG  +  +QC +VR+R+ +  +LYP Y    E   + ++ A  K S NRTSNYH+FDM RG   ++LSKK GNYLGK+R  N  R E ++  +       +++  EL  +SFE+  L++ L  G+QPRK  +L+   D         V P +  S  LS++       K+    NM LL+++EP   NGNYRLNF GRV +PSVKNFQ+V   +    +CQFGK        V ED FHLD++ P NA +AF +AL QFN
Sbjct:    2 VLVAHPRGVRNQHIQCTVVRDRNSVGGKLYPSYELILENPRKTIIKAC-KMSYNRTSNYHLFDMTRGTAGSKLSKKAGNYLGKLRARNTNRLECSLLNH-------KADKEELMGVSFEKMTLINQLTEGTQPRKMRILILRPDVVTG-TTEGVYPSNFGSPSLSDLLLDVVDRKKSLPENMMLLETKEPVLENGNYRLNFFGRVNLPSVKNFQIVHYSNIDEILCQFGK--------VEEDMFHLDFKTPFNALEAFALALCQFN 250
[Close]
BLAST of mRNA_P-littoralis_Contig174.36.1 vs. uniprot
Match: A0A812Y244_SYMMI (Tulp3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y244_SYMMI)

HSP 1 Score: 174 bits (441), Expect = 7.980e-47
Identity = 88/155 (56.77%), Postives = 106/155 (68.39%), Query Frame = 1 
Query: 2287 RSEVAE-LGAISFERPGLVDHLRGGSQPRKFSVLLPALDCNGAPVAHKVD-PYDADSDMLSNIKRGRYGNMFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDKLHTVCQFGKASTRYTRIVGEDRFHLDYRAPINAFQAFCIALAQFN 2745
            RSEV E + AI F+R GLV  ++ G QPRK SVLLP LD    PV H+ +  +     M+  +KR     MFLL S+EP Y NGNYRLNFHGRV+VPSVKNFQL SPDD  H +CQFGK        +G+DRFHLDY+AP+NAFQAF +AL  F+
Sbjct:    8 RSEVREEVAAIVFDRVGLVSQIKDGCQPRKMSVLLPQLDAESHPVPHRTENKHGVKKSMVDMLKRDDTSRMFLLASKEPVYENGNYRLNFHGRVSVPSVKNFQLSSPDDPGHVICQFGK--------IGDDRFHLDYKAPLNAFQAFSLALCHFD 154
[Close]
BLAST of mRNA_P-littoralis_Contig174.36.1 vs. uniprot
Match: T0Q607_SAPDV (Tub domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=T0Q607_SAPDV)

HSP 1 Score: 181 bits (458), Expect = 1.930e-46
Identity = 112/247 (45.34%), Postives = 150/247 (60.73%), Query Frame = 1 
Query: 2011 LVQCVIVRNRSGMNRLYPQYRFFFEGRVEQLMMAAEKCSKNRTSNYHVFDMKRGGFRARLSKKNGNYLGKVRTNLKRTEATVFTNDQARAERRSEVAELGAISFERPGLVDHLRGGSQPRKFSVLLPALDCNGAPVAHKVDPY-DADSDMLSNIKRGRYGNMFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDKLHTVCQFGKASTRYTRIVGEDRFHLDYRAPINAFQAFCIALAQFNF 2748
            L +  IVR   G NRL PQY+FF + +   L++ A+K   NRTSNYH+FDM RG    +LSKK+GNY+GK+R++  R E  + +   A+AE+R    ELGAI FE      H    S+PRK +V+ P L  +G   A  V    DA S +   +K GR  ++ +L +++P Y  G YRLNF+GRV+VPSVKNFQLV    K   + QFGK S +         FHLD+R P+  FQAF IAL+QFN+
Sbjct:  150 LTEGSIVRCNHGANRLTPQYQFFIKNK---LVLLAQKQLNNRTSNYHIFDMSRGAASYKLSKKSGNYIGKLRSSFGRQENVMIS---AQAEKR----ELGAILFETK--TSH----SKPRKLTVICPGLTSSGE--AKSVPSKGDAFSSLAEQVKLGRTSDLVILDNKDPEYEKGCYRLNFNGRVSVPSVKNFQLVLRGTKQGVILQFGKVSDKL--------FHLDFRHPMTPFQAFSIALSQFNY 370
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYS0_ECTSI7.530e-15867.26Tub domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z9X0_9STRA7.650e-9360.98Tubby C-terminal-like domain-containing protein n=... [more]
A0A7S3YIB9_HETAK1.820e-8455.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V188_9STRA1.730e-7355.80Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2GC62_9STRA6.570e-6143.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2D0G1_9STRA3.070e-5843.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2H5B0_9STRA5.060e-5039.44Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A482S955_9ARCH1.020e-4740.60Tub domain-containing protein (Fragment) n=1 Tax=a... [more]
A0A812Y244_SYMMI7.980e-4756.77Tulp3 protein n=1 Tax=Symbiodinium microadriaticum... [more]
T0Q607_SAPDV1.930e-4645.34Tub domain-containing protein n=3 Tax=Saprolegnia ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:172467..178035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FYS0
PFAMsTub
Model size2751
Max annot lvl2759|Eukaryota
KEGG koko:K19600
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.23e-158
EggNOG OGsKOG2502@1|root,KOG2502@2759|Eukaryota
Ec32 ortholog descriptionTubby C-terminal-like domain
Ec32 orthologEc-19_002290.1
Descriptionphosphatidylinositol binding
Cds size2751
COG categoryS
BRITEko00000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.36.1prot_P-littoralis_Contig174.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 172467..178035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789837.7080207-CDS-P-littoralis_Contig174:172466..1737881680789837.7080207-CDS-P-littoralis_Contig174:172466..173788Pylaiella littoralis U1_48CDSP-littoralis_Contig174 172467..173788 +
1680789837.7224755-CDS-P-littoralis_Contig174:174203..1749181680789837.7224755-CDS-P-littoralis_Contig174:174203..174918Pylaiella littoralis U1_48CDSP-littoralis_Contig174 174204..174918 +
1680789837.732686-CDS-P-littoralis_Contig174:175280..1754271680789837.732686-CDS-P-littoralis_Contig174:175280..175427Pylaiella littoralis U1_48CDSP-littoralis_Contig174 175281..175427 +
1680789837.7458508-CDS-P-littoralis_Contig174:176053..1761611680789837.7458508-CDS-P-littoralis_Contig174:176053..176161Pylaiella littoralis U1_48CDSP-littoralis_Contig174 176054..176161 +
1680789837.7645152-CDS-P-littoralis_Contig174:176571..1767361680789837.7645152-CDS-P-littoralis_Contig174:176571..176736Pylaiella littoralis U1_48CDSP-littoralis_Contig174 176572..176736 +
1680789837.7746391-CDS-P-littoralis_Contig174:177008..1772121680789837.7746391-CDS-P-littoralis_Contig174:177008..177212Pylaiella littoralis U1_48CDSP-littoralis_Contig174 177009..177212 +
1680789837.7891922-CDS-P-littoralis_Contig174:177945..1780351680789837.7891922-CDS-P-littoralis_Contig174:177945..178035Pylaiella littoralis U1_48CDSP-littoralis_Contig174 177946..178035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.36.1

>prot_P-littoralis_Contig174.36.1 ID=prot_P-littoralis_Contig174.36.1|Name=mRNA_P-littoralis_Contig174.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=917bp
NQVAYKFPPPVDSPPFIASSRYEEGGEGEKNRRRSRSATPPRPRGGRRGG
FGLVYDRQQGGHCGDSSSSRSSSSCGSHSSRSRSSSNSSRRSSSRSGLRG
DDRDGHYIGGSSSTSGDEGKTYLANDLVSAENDGESGDGGKGGVRSGSSI
DGKRGIYNHRDGQHGSLGLSECAGRIRRPSRDSAAAYPLEKEYHHNRPCC
SHPKNRSRKKGASTGRWAEGSPAKNIIASNNDEEDDNGDNGDNDESPGSY
VCRRNSSRRSIKRGEKARGSETTATPSPREYPSGFGRSPVSGTSVSGGNE
GVVGGPAISAETDAMAYGTGGGGSSGGDGGSGLNSSRQRHSTTSSSSTLR
AFRQESTLPSPDFGGEVHDDDRGLQIDDSASKGNRKRDGGRSSHGGGDSV
NLSENDQKSSSRRRESLRAMRSHHSEETKKTSGSASNADASSAFRAALMH
PIFHFPAHHPRKLARCRDRRGGGGHRARGIRDNKTPRRREESDAILEAFG
KSSSIVGNDDNNDDDDVKHDNDSSVRIESPPTATKTSKKSDREAASGDEN
SGGAKPRATTGSWFAAKEEWEDEGESKIYGDTGDDDDDDISASDSLSDKI
INSRRCHRGESTGMLGGGSPGEGRGADETVGGGSVGSSSELCWGESSKER
QTPARCNSLMLSYERGNNSDLVQCVIVRNRSGMNRLYPQYRFFFEGRVEQ
LMMAAEKCSKNRTSNYHVFDMKRGGFRARLSKKNGNYLGKVRTNLKRTEA
TVFTNDQARAERRSEVAELGAISFERPGLVDHLRGGSQPRKFSVLLPALD
CNGAPVAHKVDPYDADSDMLSNIKRGRYGNMFLLQSREPTYTNGNYRLNF
HGRVTVPSVKNFQLVSPDDKLHTVCQFGKASTRYTRIVGEDRFHLDYRAP
INAFQAFCIALAQFNF*
back to top

mRNA from alignment at P-littoralis_Contig174:172467..178035+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.36.1 ID=mRNA_P-littoralis_Contig174.36.1|Name=mRNA_P-littoralis_Contig174.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5569bp|location=Sequence derived from alignment at P-littoralis_Contig174:172467..178035+ (Pylaiella littoralis U1_48)
AACCAAGTAGCCTACAAGTTTCCGCCCCCGGTCGATTCGCCCCCATTCAT
TGCATCATCCCGCTATGAAGAAGGCGGAGAAGGAGAAAAAAACCGAAGGC
GCAGCCGCAGTGCTACCCCACCTCGGCCTCGTGGCGGTCGTCGGGGTGGC
TTTGGTTTGGTCTACGACCGTCAACAAGGTGGCCACTGTGGCGATAGCAG
CAGTAGCCGAAGTAGTAGCAGCTGTGGCAGTCACAGCAGCCGTAGCAGGA
GCAGCAGCAACAGCAGTAGAAGGAGCAGCAGCAGAAGTGGTTTAAGAGGC
GATGATCGCGACGGTCACTACATCGGCGGCAGCAGCAGCACCAGTGGTGA
CGAGGGGAAAACTTATCTTGCCAACGATCTCGTGAGTGCTGAGAACGATG
GCGAGAGTGGGGATGGTGGTAAAGGTGGGGTACGCAGCGGCAGCAGCATC
GACGGAAAGAGAGGAATATACAATCATCGCGACGGCCAACACGGTAGTTT
GGGCCTTAGCGAATGTGCTGGGCGGATTCGAAGACCGTCGAGGGACTCAG
CAGCAGCCTACCCTCTGGAAAAGGAGTACCACCATAACCGGCCTTGTTGT
TCGCACCCCAAAAACCGTAGTAGAAAAAAGGGAGCGTCGACTGGCCGTTG
GGCCGAAGGAAGCCCTGCAAAAAATATTATTGCTAGCAATAACGACGAAG
AGGACGACAATGGTGACAACGGCGATAACGACGAAAGCCCCGGGTCATAC
GTTTGTCGCAGAAACAGTTCTCGTCGTTCAATCAAGAGAGGTGAGAAAGC
TCGAGGGTCGGAGACGACTGCAACACCCTCGCCTCGTGAATACCCGTCCG
GCTTCGGCAGGTCGCCAGTGAGCGGGACGTCCGTCAGCGGCGGGAACGAA
GGGGTTGTAGGTGGGCCCGCAATATCCGCAGAGACGGACGCGATGGCATA
CGGGACAGGTGGCGGTGGTAGTAGTGGTGGCGACGGCGGCAGCGGTCTCA
ACAGCTCGCGACAGCGACACTCTACCACTTCCTCGTCGTCAACCTTAAGA
GCCTTCCGCCAAGAGAGTACGCTACCTTCGCCAGATTTTGGTGGTGAGGT
ACACGACGATGACCGTGGCCTCCAAATCGACGATTCAGCTTCGAAGGGGA
ACCGCAAACGCGATGGTGGTCGTAGTAGTCATGGTGGTGGTGACTCTGTC
AATCTCTCGGAGAATGACCAGAAATCGTCATCGAGGAGGAGAGAGTCACT
GCGTGCGATGAGAAGCCATCATTCCGAAGAGACAAAGAAGACTAGCGGTT
CGGCAAGCAACGCGGACGCGAGGTGACTGAGTTGTTGCTTCCCGGGCAGA
GGGTAGAGGAGAGAGAGGCGGGAAGGGTGGGGGGGCGGCAGGCAGCAAGA
GAGAGGATGACCAGAAACGTATCAAAGAAATGAGAAGACAAGGGGGGAAA
TCAACACTTCATAGTCCGCCGCCAAATCACAGCAATGCTCATTACCAGCA
GGCTCATGCTAATAAAGATCAACCTTACATGAGATAAGTTGTTGGAATAA
GGCTTCAATTTTGCCTTTCCAAGGTCGCGTACTGTTCATCTTCAATAGAG
ACTACATTAGCGCCGATCGATAACTACCAAAATACGACCATATCACCACC
TCGGGGAAGTCATAGAGGACACTCCCCCGCCCCCTGATTACACCGTTTGG
CGAATTCTTCGCCCTCTATGTTTGAATCACTCAAAAGTTCAGCTTTTCGT
GCCGCACTCATGCATCCGATCTTTCATTTCCCCGCACATCACCCCAGGAA
GCTGGCACGCTGCAGAGACAGAAGGGGCGGGGGGGGGCACCGTGCCAGAG
GGATCCGAGACAACAAGACACCACGACGTCGCGAAGAATCCGATGCCATC
CTCGAGGCCTTCGGTAAGAGCAGCAGCATCGTCGGTAACGATGACAACAA
CGACGACGACGACGTCAAGCACGACAATGATTCTAGTGTAAGGATCGAAA
GTCCGCCCACTGCCACGAAAACGAGTAAGAAGAGTGACCGGGAGGCAGCC
AGTGGCGATGAGAATAGTGGCGGAGCAAAACCAAGAGCAACTACCGGGAG
TTGGTTCGCGGCAAAGGAGGAGTGGGAGGACGAGGGGGAGAGCAAGATTT
ACGGTGACACTGGGGATGATGATGATGATGATATTTCAGCCAGCGACTCA
CTTTCAGATAAAATCATCAACTCCAGGCGGTGCCATCGTGGTGAAAGTAC
GGGGATGCTAGGCGGAGGCAGCCCGGGCGAGGGACGGGGTGCAGATGAGA
CCGTTGGGGGTGGCAGCGTTGGGAGTAGCAGCGAGCTTTGTTGGGGGGAG
TCGTCTAAGGAGAGGCAGACGCCTGCACGATGCAACTCGCTCATGCTGTC
ATACGAGAGGGGAAACAACTCGGACTTAGTGCAGTGCGTCATTGTGAGGA
ACGTGAGTGAAACTGGACACGATATAAAAGCGTTCTCTCTTGTAAGTGCG
TTAATTCGCCCGGTTCCGAAAGGAAAAAGCGACATCACTATCCACAAGGT
TGTGGCCGTGGGTAAAAGTGCTTCCGACAATTTTGCTCGTCGAGTTAATG
ATACTGGCAGCATGTTGCTGAGGCGTTGCTCGTGGCCTGTCGTTTCGCGT
TGAGCGTAGCCTGCTGTTTAATCGCGAATACAATCGCGCCTTGTCTTCCT
GCCTCCATCAAGAGTAAACAAGTCAACTACATCCACCAGGCGTACCAAGC
TAACCTTGCTCTCTCGTACCATCGCACCCCTTCCCTCCCTGTGTCTCCCC
GCGCCCTCTTGAAGCGCTCTGGGATGAACCGCTTGTATCCTCAGTATAGA
TTTTTCTTCGAAGGGAGAGTGGAGCAGCTCATGATGGCTGCGGAGAAGTG
CAGCAAAAACCGCACGAGCAACTACCATGTCTTCGATATGAAGCGTGGAG
GGTTCCGAGCGGTGAGTCAACTTTGAGCACTCGACAACGTTTGTTCACTG
TACAGCGGTGTGGGTAAGGAAGGAGAGAGGCCGGTTTGCAATAGCACGGG
CTGCGCATCCGTTTTTTAGCTCCTATAAAGAAAAAACTCCTGTGCTGACT
CCCCCCTGTGTGACCCCAGTTGGAGCGTCGACCTACCCGAAAGGTGCAGA
GTGGCGTCCAATTAAAGGGATGACAACACACACAACACACATACAAGAGA
GTTGGTGCCAACAAACCCGGGTAAATTGGTGGGAGGTGGTGGCGATCGGC
ACAAAAGCGACACCAAATATAGAAAGCGCAATCACCGGCACGATTAAAAA
TATACGTGCTCTTTTCAGCGAAACGACACTGTTACTGATGAACTGTTTTT
CTGCGCTCTCATGTATTAATAACACAGATAGCAGCACCTGTCTGCGTCGA
ATGTTTCTTCAAATCCGTGTTGTTTGAACGAAAGACTAATCCTTGGCTAC
AAGTGATACCATTCGAAGCACGTTCCGGTGTCAATCAAGAGTCTTCTCCT
CCGCACGTTCCGGGTGTCCATTTGATCGATTTTCCCAATCGATTCGGATT
ATTGCCGGTTGGCGACGTTTCGATGATTGCCCGGCAGCGTCTTAGCAAGA
AGAACGGGAACTACCTGGGAAAGGTCAGGACAAACCTGAAGAGAACGGAG
GCTACCGTCTTCACGAACGACCAGGCAAGAGCAGAGCGAAGAAGCGTGGA
AATAGCACACGATGGATGTGAGGGCACCACTCGCTACGGTAACCCTCACA
ATAAATCGTGACTCAGACTTCGTCGGCGATTTGAGAGGAGAAAAAAAAAA
TGATACCTTCTTTCATTGCCCTCTTTCAACAATCCGTCAGTGAGCATAAA
CCGCAGCAACAAGGTGGTGGCCTGCGATGCTCTTACGGTATCGTGCAAGC
CTACTCCGGTGCCGCCAAAGCCCCAATAGGTAAAATGGTTATCAGCAGAA
GAAGGTCACTGCCTGAGATTCATTTTGTTAAAACTGAAGAATCTCAGGCC
TGAACTTTCATCACTCGTCGAAATGTTGAAAATCTAGGAATTTAAATTTT
CACAAACCGAAAACCAACACCACCCCTAACAAACGATTGAAAACGATGTT
AACAGGAGGTCGCCGAACTAGGTGCTATTTCATTCGAAAGGCCTGGCCTG
GTCGATCACTTGCGAGGCGGAAGCCAGCCCAGGAAGTTCTCGGTCTTGTT
ACCCGCGCTGGACTGCAACGGTGCGCCCGTCGCGCACAAGGTGGACCCGT
ATGACGCGGACAGCGACATGGTGAGGAACAAAAACGAGTGTACCGTGTGC
TCTCGGTGCTTGAGATCAATTTATGTTGCTGTGGGACAATCCTGAAGACG
TGTTTCAGACTCTAACAGACCATCGGTAAAACTATCACGCACAGGGATTA
CGTCGATAAGATGTCCGAGCCCCCTCCCCGTGGTACCCCCGGCCTTACGC
CCCTCCTCCGCTCTCTTCACTCCAATTATCTCCGTCGCTGTCTCTTGCTT
GCTTTCTTATTTTCTCCTCTTGCTCATTCTACATCCTCCCAGCTGTCCAA
TATCAAGCGCGGTAGATACGGAAATATGTTTCTCCTCCAGTCGAGGGAGC
CAACCTACACGAACGGAAACTACCGCCTCAACTTCCATGGGCGCGTGACG
GTACCATCGGTGAAGAACTTCCAACTCGTCAGCCCCGACGACAAGCTGCA
CACCGTGTGCCAATTCGGCAAGGCAAGCACTCGGTATACTCGTATTGTTT
CTGCTCATGTTACCCCCCTCCACTTTCACGCTACAGTATGATACCATTTT
TTCGTGTGGTTTGGTTCAGACCTCGCCGGTCTAAATGTCGTTGGTCAGCA
TTTGTCAGCTCGTCGTCCCTGATGCATGCAAAACCACTACACGCCTTGTG
TCGCTTCGGCAAGGTACGTGTACGAAAGGTGGGGAGTACGTCAAACGCCC
GTCTTTGGCTTGCTCGTGGGCTTGATCAAGAGAAAACTATAGATTGCGTA
GTAGATCTATCGCACCCATGTTTTGCTATTGTTTGAAAACGTTGAACCTC
GTGATTGTTTACCACACGTCTCGTCGAAGAGGCTGTGCGCAGCGTCTACG
TACAACAAGTCGCTTGTGGTATTGAAAGCGCATGACGCGCTTCAGAGTTC
TACAAGTACCGGACACATCGCTCGCGCGTTCCTTATTGCTTATGATACTC
GTAGGTGTGTGGTAAACCCCCGGGTGGAACTCGACGCAGTGAGGCTATGG
AGCAGTAGCGCGCTGTGGATGCCGTTTTCACCACGGTTCACAGTAAACAT
GTTACGCACGAAGAGAGGAGATAAATCCCCAAACAGAAAAGTACATACTT
GAACGAATTCGTCGTTGGTCGTCACCAACGTTCTGCAGCTGAACACAGGT
ACACACGCAATAATCCGGACCTGTTGGAAATGCTCACGCTCATGAAATAC
TATCCATGTGCGTATGCTGCGTACGGCAGGTGGGAGAAGACCGGTTCCAC
TTGGACTACCGTGCCCCCATCAACGCCTTCCAAGCGTTCTGCATCGCCCT
CGCGCAGTTTAACTTCTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig174:172467..178035+

>mRNA_P-littoralis_Contig174.36.1 ID=mRNA_P-littoralis_Contig174.36.1|Name=mRNA_P-littoralis_Contig174.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2751bp|location=Sequence derived from alignment at P-littoralis_Contig174:172467..178035+ (Pylaiella littoralis U1_48)
AACCAAGTAGCCTACAAGTTTCCGCCCCCGGTCGATTCGCCCCCATTCAT
TGCATCATCCCGCTATGAAGAAGGCGGAGAAGGAGAAAAAAACCGAAGGC
GCAGCCGCAGTGCTACCCCACCTCGGCCTCGTGGCGGTCGTCGGGGTGGC
TTTGGTTTGGTCTACGACCGTCAACAAGGTGGCCACTGTGGCGATAGCAG
CAGTAGCCGAAGTAGTAGCAGCTGTGGCAGTCACAGCAGCCGTAGCAGGA
GCAGCAGCAACAGCAGTAGAAGGAGCAGCAGCAGAAGTGGTTTAAGAGGC
GATGATCGCGACGGTCACTACATCGGCGGCAGCAGCAGCACCAGTGGTGA
CGAGGGGAAAACTTATCTTGCCAACGATCTCGTGAGTGCTGAGAACGATG
GCGAGAGTGGGGATGGTGGTAAAGGTGGGGTACGCAGCGGCAGCAGCATC
GACGGAAAGAGAGGAATATACAATCATCGCGACGGCCAACACGGTAGTTT
GGGCCTTAGCGAATGTGCTGGGCGGATTCGAAGACCGTCGAGGGACTCAG
CAGCAGCCTACCCTCTGGAAAAGGAGTACCACCATAACCGGCCTTGTTGT
TCGCACCCCAAAAACCGTAGTAGAAAAAAGGGAGCGTCGACTGGCCGTTG
GGCCGAAGGAAGCCCTGCAAAAAATATTATTGCTAGCAATAACGACGAAG
AGGACGACAATGGTGACAACGGCGATAACGACGAAAGCCCCGGGTCATAC
GTTTGTCGCAGAAACAGTTCTCGTCGTTCAATCAAGAGAGGTGAGAAAGC
TCGAGGGTCGGAGACGACTGCAACACCCTCGCCTCGTGAATACCCGTCCG
GCTTCGGCAGGTCGCCAGTGAGCGGGACGTCCGTCAGCGGCGGGAACGAA
GGGGTTGTAGGTGGGCCCGCAATATCCGCAGAGACGGACGCGATGGCATA
CGGGACAGGTGGCGGTGGTAGTAGTGGTGGCGACGGCGGCAGCGGTCTCA
ACAGCTCGCGACAGCGACACTCTACCACTTCCTCGTCGTCAACCTTAAGA
GCCTTCCGCCAAGAGAGTACGCTACCTTCGCCAGATTTTGGTGGTGAGGT
ACACGACGATGACCGTGGCCTCCAAATCGACGATTCAGCTTCGAAGGGGA
ACCGCAAACGCGATGGTGGTCGTAGTAGTCATGGTGGTGGTGACTCTGTC
AATCTCTCGGAGAATGACCAGAAATCGTCATCGAGGAGGAGAGAGTCACT
GCGTGCGATGAGAAGCCATCATTCCGAAGAGACAAAGAAGACTAGCGGTT
CGGCAAGCAACGCGGACGCGAGTTCAGCTTTTCGTGCCGCACTCATGCAT
CCGATCTTTCATTTCCCCGCACATCACCCCAGGAAGCTGGCACGCTGCAG
AGACAGAAGGGGCGGGGGGGGGCACCGTGCCAGAGGGATCCGAGACAACA
AGACACCACGACGTCGCGAAGAATCCGATGCCATCCTCGAGGCCTTCGGT
AAGAGCAGCAGCATCGTCGGTAACGATGACAACAACGACGACGACGACGT
CAAGCACGACAATGATTCTAGTGTAAGGATCGAAAGTCCGCCCACTGCCA
CGAAAACGAGTAAGAAGAGTGACCGGGAGGCAGCCAGTGGCGATGAGAAT
AGTGGCGGAGCAAAACCAAGAGCAACTACCGGGAGTTGGTTCGCGGCAAA
GGAGGAGTGGGAGGACGAGGGGGAGAGCAAGATTTACGGTGACACTGGGG
ATGATGATGATGATGATATTTCAGCCAGCGACTCACTTTCAGATAAAATC
ATCAACTCCAGGCGGTGCCATCGTGGTGAAAGTACGGGGATGCTAGGCGG
AGGCAGCCCGGGCGAGGGACGGGGTGCAGATGAGACCGTTGGGGGTGGCA
GCGTTGGGAGTAGCAGCGAGCTTTGTTGGGGGGAGTCGTCTAAGGAGAGG
CAGACGCCTGCACGATGCAACTCGCTCATGCTGTCATACGAGAGGGGAAA
CAACTCGGACTTAGTGCAGTGCGTCATTGTGAGGAACCGCTCTGGGATGA
ACCGCTTGTATCCTCAGTATAGATTTTTCTTCGAAGGGAGAGTGGAGCAG
CTCATGATGGCTGCGGAGAAGTGCAGCAAAAACCGCACGAGCAACTACCA
TGTCTTCGATATGAAGCGTGGAGGGTTCCGAGCGCGTCTTAGCAAGAAGA
ACGGGAACTACCTGGGAAAGGTCAGGACAAACCTGAAGAGAACGGAGGCT
ACCGTCTTCACGAACGACCAGGCAAGAGCAGAGCGAAGAAGCGAGGTCGC
CGAACTAGGTGCTATTTCATTCGAAAGGCCTGGCCTGGTCGATCACTTGC
GAGGCGGAAGCCAGCCCAGGAAGTTCTCGGTCTTGTTACCCGCGCTGGAC
TGCAACGGTGCGCCCGTCGCGCACAAGGTGGACCCGTATGACGCGGACAG
CGACATGCTGTCCAATATCAAGCGCGGTAGATACGGAAATATGTTTCTCC
TCCAGTCGAGGGAGCCAACCTACACGAACGGAAACTACCGCCTCAACTTC
CATGGGCGCGTGACGGTACCATCGGTGAAGAACTTCCAACTCGTCAGCCC
CGACGACAAGCTGCACACCGTGTGCCAATTCGGCAAGGCAAGCACTCGGT
ATACTCGTATTGTGGGAGAAGACCGGTTCCACTTGGACTACCGTGCCCCC
ATCAACGCCTTCCAAGCGTTCTGCATCGCCCTCGCGCAGTTTAACTTCTG
A
back to top