mRNA_P-littoralis_Contig174.24.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.24.2
Unique NamemRNA_P-littoralis_Contig174.24.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig174.24.2 vs. uniprot
Match: D7G118_ECTSI (Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G118_ECTSI)

HSP 1 Score: 357 bits (915), Expect = 2.950e-122
Identity = 184/196 (93.88%), Postives = 185/196 (94.39%), Query Frame = 3 
Query:  243 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKVVDSAAAKEYAESLGIPFLETSAKSASNVEEAFLTMASELIRTREARAATQVDNPTVQLGGSGSGASSNSKCC 830
            DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKVVDSAAAKEYAESLGIPFLETSAK+ASNVEEAFLTMASELIRTREARAATQVDN TV LGG         KCC
Sbjct:    7 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKVVDSAAAKEYAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAATQVDNSTVNLGGXXXXXXXXXKCC 202
[Close]
BLAST of mRNA_P-littoralis_Contig174.24.2 vs. uniprot
Match: A0A835Z965_9STRA (Rab1A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z965_9STRA)

HSP 1 Score: 328 bits (842), Expect = 4.330e-111
Identity = 172/200 (86.00%), Postives = 178/200 (89.00%), Query Frame = 3 
Query:  243 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKVVDSAAAKEYAESLGIPFLETSAKSASNVEEAFLTMASELIRTREARAATQVDNP----TVQLGGSGSGASSNSKCC 830
            DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT QESF HVNDWLSEVNRYASEGTSKLLIGNKSDR DK V +  AK +A+SLGIPFLETSAKSASNVEEAFLTMASELIRTREARAA Q ++     TVQL    SG  S+ KCC
Sbjct:    7 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGGSSGKCC 206
[Close]
BLAST of mRNA_P-littoralis_Contig174.24.2 vs. uniprot
Match: A0A7S3VAP6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAP6_9STRA)

HSP 1 Score: 306 bits (784), Expect = 3.260e-102
Identity = 161/206 (78.16%), Postives = 173/206 (83.98%), Query Frame = 3 
Query:  222 SGTRVICDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDRE-DKVVDSAAAKEYAESLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAT--QVDNPTVQLGGSGSGASSNSKCC 830
            +G +   D+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT Q+SFDHVNDWL EVNRYASEGT KLL+GNKSDR  DKVV +  AKE+A+ +GIPFLETSAKSA+NVEEAFLTMASELI+ R AR  T    D   VQLGG        S CC
Sbjct:    5 NGKKSDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQDSFDHVNDWLKEVNRYASEGTCKLLVGNKSDRTTDKVVTAEQAKEFADDIGIPFLETSAKSAANVEEAFLTMASELIKQRIARGGTAEDADGDNVQLGGGKRAKEMMSNCC 210
[Close]
BLAST of mRNA_P-littoralis_Contig174.24.2 vs. uniprot
Match: A0A7S1XNK2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNK2_9STRA)

HSP 1 Score: 298 bits (764), Expect = 2.050e-99
Identity = 154/197 (78.17%), Postives = 171/197 (86.80%), Query Frame = 3 
Query:  243 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDR-EDKVVDSAAAKEYAESLGIPFLETSAKSASNVEEAFLTMASELIRTREARAATQVDNPTVQLGGSGSGASSNSKCC 830
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTV+IDKK VKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT QESF+ +  WL+EVNRYA+EGT KLL+GNKSDR ED++V +A  +E A+SLGIPFLETSAK+A+NVEEAFLTMASELI +RE R     D+  +QLG SG G   N KCC
Sbjct:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVRIDKKVVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNQESFNSITAWLNEVNRYATEGTCKLLVGNKSDRDEDRIVTTAQGEEMAKSLGIPFLETSAKNAANVEEAFLTMASELITSREERGGATGDDANLQLGSSGGG---NGKCC 194
[Close]
BLAST of mRNA_P-littoralis_Contig174.24.2 vs. uniprot
Match: F0YFR6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFR6_AURAN)

HSP 1 Score: 298 bits (763), Expect = 4.110e-99
Identity = 157/200 (78.50%), Postives = 170/200 (85.00%), Query Frame = 3 
Query:  243 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKVVDSAAAKEYAESLGIPFLETSAKSASNVEEAFLTMASELIRTREARAATQVDNPTVQLGGSG----SGASSNSKCC 830
            DHLFKLVLIGD+GVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK+D KTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT  ESFDHV+DWL+EVNRYA+EGT KLL+GNK D EDKVV + AAKEYA+ LGIPFLETSAK+A+NVEEAFLTMA ELIR REA   +Q   P    G SG     G+S   KCC
Sbjct:    7 DHLFKLVLIGDTGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKVDGKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSSESFDHVSDWLTEVNRYANEGTCKLLVGNKCDMEDKVVTTEAAKEYADGLGIPFLETSAKNATNVEEAFLTMAGELIRLREA---SQSAKPGAG-GASGLKLSGGSSRTKKCC 202
[Close]
BLAST of mRNA_P-littoralis_Contig174.24.2 vs. uniprot
Match: W7TI50_9STRA (Rab1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TI50_9STRA)

HSP 1 Score: 296 bits (759), Expect = 2.120e-98
Identity = 153/194 (78.87%), Postives = 166/194 (85.57%), Query Frame = 3 
Query:  243 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKVVDSAAAKEYAESLGIPFLETSAKSASNVEEAFLTMASELIRTREARAATQVDNPTVQLGGSGSGASSNSK 824
            D LFKLVLIGD+GVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT +ESF+H+ DWL+EVNRYASEGT KLL+GNKSDR DKVV +  AK++A+ LGIPFLETSAK+ASNVEEAFLTMA ELIR REA+ A          G SG   S +SK
Sbjct:    7 DFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAASGKSGDTVSLSSK 200
[Close]
BLAST of mRNA_P-littoralis_Contig174.24.2 vs. uniprot
Match: A0A7S2N4U8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N4U8_9STRA)

HSP 1 Score: 296 bits (757), Expect = 4.120e-98
Identity = 154/197 (78.17%), Postives = 165/197 (83.76%), Query Frame = 3 
Query:  243 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDRE-DKVVDSAAAKEYAESLGIPFLETSAKSASNVEEAFLTMASELIRTREARAATQVDNPTVQLGGSGSGASSNSKCC 830
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT ++SFDHVNDW+ EVNRYASEGT KLL+GNKSDR  DK+V    AKE+A+ LGI FLETSAKSA NVEEAFLTMA ELI+ R  R +   D   V L G G  +   S CC
Sbjct:   15 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSKDSFDHVNDWMKEVNRYASEGTCKLLVGNKSDRTADKIVKEEEAKEFADELGIAFLETSAKSAKNVEEAFLTMAGELIKQRAERGSNGDDKQKVSLNGEGR-SQVMSNCC 210
[Close]
BLAST of mRNA_P-littoralis_Contig174.24.2 vs. uniprot
Match: A0A7S2Y0T5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0T5_9STRA)

HSP 1 Score: 293 bits (750), Expect = 3.380e-97
Identity = 147/196 (75.00%), Postives = 171/196 (87.24%), Query Frame = 3 
Query:  243 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKVVDSAAAKEYAESLGIPFLETSAKSASNVEEAFLTMASELIRTREARAATQVDNPTVQLGGSGSGASSNSKCC 830
            D+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK+D+KTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYD+T +E+FDHVNDWL+EV+RYA E T KLL+GNKSDR D+ V++  AKEYA+ LGIPF+ETSAKSA+NVE+AFLTMA +LI  R+A+   +  N  V LGG  S ++S  +CC
Sbjct:    7 DYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKLDQKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDITHKEAFDHVNDWLAEVDRYAGESTCKLLVGNKSDRTDRAVETQTAKEYADELGIPFIETSAKSAANVEQAFLTMAKQLIELRQAKGVEE-SNQNVSLGGKSS-STSLPQCC 200
[Close]
BLAST of mRNA_P-littoralis_Contig174.24.2 vs. uniprot
Match: A0A6V1NVS4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NVS4_HETAK)

HSP 1 Score: 293 bits (750), Expect = 9.770e-97
Identity = 153/201 (76.12%), Postives = 170/201 (84.58%), Query Frame = 3 
Query:  243 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKVVDSAA-----AKEYAESLGIPFLETSAKSASNVEEAFLTMASELIRTREARAATQVDNPTVQLGGSGSGASSNSKCC 830
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRF+TVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDV  +ESF+HV+ WLSEVNRYA+EGT KLL+GNKSDR ++  D+       AK+YA+ LGIPF+ETSAKSASNVEEAFLTMAS+LI+ REAR   +   P V LG   S  S+  KCC
Sbjct:   32 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFKTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVMNKESFEHVSAWLSEVNRYANEGTCKLLVGNKSDRAEEAPDARQVAAEEAKKYADDLGIPFIETSAKSASNVEEAFLTMASQLIQLREARGEDESMKPAVTLGSRQS--SAKDKCC 230
[Close]
BLAST of mRNA_P-littoralis_Contig174.24.2 vs. uniprot
Match: A0A7S1GR15_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GR15_CYCTE)

HSP 1 Score: 292 bits (748), Expect = 9.920e-97
Identity = 155/197 (78.68%), Postives = 163/197 (82.74%), Query Frame = 3 
Query:  243 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDR-EDKVVDSAAAKEYAESLGIPFLETSAKSASNVEEAFLTMASELIRTREARAATQVDNPTVQLGGSGSGASSNSKCC 830
            D+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT  ESFDHVNDWL EVNRYA+EGT KLL+GNKSDR  DKVV    AKE+A+ LGI FLETSAKSA NVEEAFLTMA ELIR R+AR  T      + L G     S    CC
Sbjct:   16 DYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSSESFDHVNDWLKEVNRYAAEGTVKLLVGNKSDRVADKVVTEEKAKEFADELGIAFLETSAKSAKNVEEAFLTMAGELIRQRDARGITSDGKSGIDLSGRKK-ESVLGNCC 211
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.24.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G118_ECTSI2.950e-12293.88Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835Z965_9STRA4.330e-11186.00Rab1A, rab family GTPase n=1 Tax=Tribonema minus T... [more]
A0A7S3VAP6_9STRA3.260e-10278.16Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1XNK2_9STRA2.050e-9978.17Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0YFR6_AURAN4.110e-9978.50Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
W7TI50_9STRA2.120e-9878.87Rab1 family protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A7S2N4U8_9STRA4.120e-9878.17Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2Y0T5_9STRA3.380e-9775.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1NVS4_HETAK9.770e-9776.12Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S1GR15_CYCTE9.920e-9778.68Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:110592..118872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G118
PFAMsRas
Model size882
Max annot lvl2759|Eukaryota
KEGG koko:K07874
KEGG Pathwayko05134,map05134
Hectar predicted targeting categoryother localisation
Exons7
Evalue3.72e-123
EggNOG OGsKOG0084@1|root,KOG0084@2759|Eukaryota
Ec32 ortholog descriptionRab1A, RAB family GTPase
Ec32 orthologEc-19_002140.1
DescriptionGTPase activity
Cds size669
COG categoryS
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.24.2prot_P-littoralis_Contig174.24.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 110756..118823 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789836.879741-UTR-P-littoralis_Contig174:110591..1107551680789836.879741-UTR-P-littoralis_Contig174:110591..110755Pylaiella littoralis U1_48UTRP-littoralis_Contig174 110592..110755 +
1680789836.9676929-UTR-P-littoralis_Contig174:118823..1188721680789836.9676929-UTR-P-littoralis_Contig174:118823..118872Pylaiella littoralis U1_48UTRP-littoralis_Contig174 118824..118872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789836.8899767-CDS-P-littoralis_Contig174:110755..1108321680789836.8899767-CDS-P-littoralis_Contig174:110755..110832Pylaiella littoralis U1_48CDSP-littoralis_Contig174 110756..110832 +
1680789836.8985898-CDS-P-littoralis_Contig174:114826..1149471680789836.8985898-CDS-P-littoralis_Contig174:114826..114947Pylaiella littoralis U1_48CDSP-littoralis_Contig174 114827..114947 +
1680789836.9099746-CDS-P-littoralis_Contig174:115559..1156071680789836.9099746-CDS-P-littoralis_Contig174:115559..115607Pylaiella littoralis U1_48CDSP-littoralis_Contig174 115560..115607 +
1680789836.9208667-CDS-P-littoralis_Contig174:116252..1163481680789836.9208667-CDS-P-littoralis_Contig174:116252..116348Pylaiella littoralis U1_48CDSP-littoralis_Contig174 116253..116348 +
1680789836.9305208-CDS-P-littoralis_Contig174:116960..1170391680789836.9305208-CDS-P-littoralis_Contig174:116960..117039Pylaiella littoralis U1_48CDSP-littoralis_Contig174 116961..117039 +
1680789836.9412985-CDS-P-littoralis_Contig174:117663..1178201680789836.9412985-CDS-P-littoralis_Contig174:117663..117820Pylaiella littoralis U1_48CDSP-littoralis_Contig174 117664..117820 +
1680789836.9547906-CDS-P-littoralis_Contig174:118732..1188231680789836.9547906-CDS-P-littoralis_Contig174:118732..118823Pylaiella littoralis U1_48CDSP-littoralis_Contig174 118733..118823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.24.2

>prot_P-littoralis_Contig174.24.2 ID=prot_P-littoralis_Contig174.24.2|Name=mRNA_P-littoralis_Contig174.24.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=223bp
MYRMGKTGKANIFPTRLSNSGTRVICDHLFKLVLIGDSGVGKSCLLLRFA
DDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYR
GADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKV
VDSAAAKEYAESLGIPFLETSAKSASNVEEAFLTMASELIRTREARAATQ
VDNPTVQLGGSGSGASSNSKCC*
back to top

mRNA from alignment at P-littoralis_Contig174:110592..118872+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.24.2 ID=mRNA_P-littoralis_Contig174.24.2|Name=mRNA_P-littoralis_Contig174.24.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8281bp|location=Sequence derived from alignment at P-littoralis_Contig174:110592..118872+ (Pylaiella littoralis U1_48)
ATCAGCTGCATAATAACGGAGGAGAAAGCCTTGCTGGAGAAGGAGCTTCC
AGAGGCCGTGGATTGCCATGTCGAAGCGTGATTAGTGAGTCGGTTCAGAA
CGCAGAGGAAGACAGAGATTGTGGAAAGAAAGAACTCTCGGTCGCGCCAT
TTTTCATTCTTCGAATGTACAGGATGGGCAAGACAGGGAAAGCGAATATA
TTCCCCACTAGGCTCAGCAACAGCGGCACCCGTGTAATTTGGTGGGTGAT
GGTGATGATTGAATACATCAAGCACCTCGTGCGTCGGTATTTGGTGCCCC
GCGCTTCGAGCTTCGAATCATCTCGTTCTGTTTTCGACGTTCAGCGTTCA
TGGGCAGGTGGTATGGTCTTTCTTCTCTCGCGCAAACTCATTTTGCGCAA
AATCATTTGTGCATCACACAGCAGCACTGCCCGACTCATTGTACTTCTGT
AGAGTCGATCCTGCCATCTGCGCAGTTTTTAGTTTTTCGATTTCTTCACC
TTCGATTTGCAGTGTGCTGAAGTGGAGACACACAGAGTTGAGAGCACACC
CATCCTTCTGACAGCAGTAGCAGTATTTACCACCCCGTTAAAGCGGCGGT
GTGTGCGTGAGATCGAGAGAGCGAGAGGAGCGAGATTGAAGCTGGTTGTC
TGTTAGCTGTGTCACGAATCATCCAAACTTTGTCGCAGAAACCACCAAGA
ACTCCTGTTGTGGTTTCGTGACCGAAAGTCAAAACAATGATCGACTTCAG
TTGTACTGCCTCTCTGTAACAGCGCACTTATTATATCATGTAATTCTAGC
AGCAGTATGTGTGCGTGTTGTCATCCCTTTAATTGGACGCCACTCTGCAC
CTTTCGGGTAGGTCGACGCTCCAACTGGGGTTACACAGGGGGAACTCAAC
ACAGTAGTTTTTTTTTTTTTTCTCCACTTCCCTCTGGGGTGCTTGCCTTG
TTTTGGTTGAGCTTTTATCGCGAGAAAGGGGACAGCAAGTCCCTTCCCTC
GTCGATGGTATGCAACGTCGAAAATCGAGAATCTTCCCAAACCAGTTTAT
TCTGACCACCATGTTGTCCTGTGTGCTCTCCGTGCTGTGTGCTACTGTGA
CACCCACTCACTGCATGCTGGACGCCAGCCCACCGGCACTATGATACAGT
ATACTCGACTTAATCCGTACGATGATATGTATGTGTTGTCATCCCATATT
CTCTGGCACACTAGTCTGCACCCTGCGGTTCAAACTACAGGCTAGGCCCA
TCGACGGGGTCACACAGGAGGAAGGTCAACACAGGAGGAGTTACCCCCAC
CTTCCTTCTGCGGTACATGCGTGAGATTTTTTCTGGCGAGCAGGGATCCG
CGGTCTCTACCCTCGTCGGCGAAGCCGAATCTGATTTTACTAACAGCATA
GCCGCTTTCAAAGTAGCAAAGGAACACATTCACCGGGAATCAAACCCCCG
TTCCCCTGCATCTAGTGGTTAACTAGGGGACCACTTGTCCACCGGGGCGA
CCGGTGTATGTGCCTGTATGATGTCACGCCACGTATCTGCTGTGGTAGAC
CATGTACGAAGTTGTATTTTATTTTAAACTTACCAAAACATCAATGTGTT
CGCCTCTCTCCAGACAAGGATTTGGAGCAGATATTGCAACGAGCACAAAA
AGTGAAGTCCGTCTACCAGTGTTTCTATACTCATCAGATAATGTACCGTT
GCAACTCCCCTGAGGGTATCAGGCTCAACAAGACAATTTGGTAGTCGTCT
TGTGTGACACACGTTGTATTTCAAATTGATGTTTTTGTAAGTAAAAAAAT
AATAATAATCTCGGCGCTGCCTCTCCATCTCCTTCAATGATACGAAGTAA
CTACCTTGTTCTTCGCATAAACGATTTGATACCAGAAAGGATGGGTTGCT
CGGCGACGGGAAGGAAAGACGTCGTTTTAGAGAGCTGCATCATGCGACAA
CCTGAAGTTGGGCGATGATATTGTAGACTTATTTAATGCAGCAACCCCGT
GCTTGTAGCAGTGCCTGCGAGCTCTAGCACATCGACAGATGGTACTGCCT
ACACACGAAAGCTCGATGAGTGTTCCGTGGAGACGGCTGTTGCTGCTGCA
GTATTAGAAATGTGTGCCATATTTGTAGACTTGAGGGAGGGATGCTGGAG
TTTCCTGCGTTATTAATCGAAGGCAAGCAACAGCAAAGCAAAGTAGCGTA
CGACCTGAGGAAGCAGGAAGGTGTTTGGAGGGATTCAAGGGGATGGTACA
TCGGGCACGCCCAAAAATACTGAAACGAACTGCTGTACCAGGTGTGAAAT
TTAAGGCACAGCAGGCAAAGAGATGAGTGGACGGCGTCCAGGACAAAATC
AAAAGACAACAATAAGCACGTGCTGCTACCTATAGTTGTAGCGGAACGAC
GCTCGCTGCTGTCTAGGTGCTGTGCTTTACAAGTATTGGTTCCTCGATTC
CTGTAAAAATAACTCCGAGTATATCTTTTGTTGAGAACCTTTCCCTCTTG
TCCAATCAGGCCATCAGCGTTGTCGTTCGTATGATACAGCAGTATCGTTG
TTGTGCGCCGAGTCGAGCTATTGCACTACTCTTGAGTACTATCAAGCTGC
AGCGGTCTTAGCCTTTCCCCCCTTCCCAGTTTTCCCGACATACAACAAAT
ATCGGTCGCCGCCGTCTTCCCAGTCAACTTATTTGTAGACCAAGCGGGCA
CGTACGTACACAGCAGTGTCCTGCTGGAAGGAAGGGTAGAACTCGGCCCC
GTCTAGATTTCCGGGAACCGGGTACCCGTCTGGGCTCGATGAGATGGTAC
CGACCGGGTACCCGAGGAATTGGAAAGTGGAACACGGTGCCCCCTTCCCC
CCGGAATGGTGAAATACCGTGCCCACAAAACTTAGTTGGGCGTCGTGTGT
GAAGTTCACGGGGGTACCCCATTACCGAAGGGCACCATATTGCGATTTCA
ACTACCCGGTGGTAAATATGCTACCCGGCACCGACCGGGTAGTGCCCGGT
ACCCGGGAAAGGTTTAGACGGGGCCGATCTCTAGAAGGAAGGGAGACAGG
AAGGAAGGGCCCACATAAGGTTATAAATACAGTGCTCAGGGACGGGGGGG
TGGGGGGGGGGGAGGCGGGCGGGGGGGTTCGTGGTCGTCACATTGAGCGT
ACCACAGATGTTGAATTGAGGTTCAAGTGATGTCTGGAAGGATCAAAACA
ACATGAACAGGTCCACCTGGTTCCAGGTATGTACTAGTGCTGCTCTACAC
ACATCGCTGTATTTCCAGCTGGCGCCAATGAAACTCTGAACCTCACTCGC
TACTTACTGATGTAAGGAAACCTCAAGGTTCCAGCCTCGGATTGGCGGTC
ATGGCCTACGTCGATGACTGTTAATTTTCGAAAAAACACAAGCAGTGTAG
AAGGTCAATGCACCAGCTGGTCGATAGCACACCATCTGAGAAACGGCTTG
GAAGCCGCAGTAGGCCACCAAACAGCATTTGCTGGAGGTGTAATGGGACG
TTTGCATCCTACTTGGCTTCGTGCAAGATAGGACAGCAGTACGACCTGGT
GCAGGTGGAGTTCCCAGAAATTCTCGAGGCGTTCCTCGCGGTCCGAGATG
TCTGGGGGAGAGGCCCCGCTTTCCTCGAGTGCATGCGTAATATTGCAAAC
CGTGTCGGGTAGCAACGCGTTACCGCGTCCGAGGTGTGAACTGGCTTATT
TCCCGACGTTTGATGGCCGTGCAACTGGTCGTGAACTCTTACGCGGCGAC
TTGCGAGGCTGAAGGACATCGGCCGAGCGAAAAGGGGTTGGCTGCACAAC
GCTCTCGGTGGCGGTGTCGACTGCCGTTCCTTACGCACCCCCCTCCCTCC
ATACACACGTACAACCCCTTTGATTGCCTGGGATATTACAGCCTTGAGAA
TGCTTCAGGTCTCCTTCGTTGGCTGAGCCCTTGATATTTCGCTGGTCGCC
GCAGCTCTGCGGACTGCACGCCTTGCTGTCACTTCCGTCGTTGGGAAAGC
AGTGACGCTGTCACCGCGATGGTCGCACAGCGCCCTCTCGTTTCCAACCT
TGCCGTCTGTCTACATTCATGCCCGATCCCTGTTTTATCCCACGCGTCTG
TGCCTTGGCTTGTTCGTGTCCAAAAACCGTGTGAATGTGCGATGAGGTTT
GCATGTCATTATGTAAGGAAGAAACACCTAACAACAAAGTGCAATCGATT
TTTTCTCGGGCTGTGCCTTATTTATTTTTTCTCAGTGATCACCTCTTCAA
GCTGGTGCTCATCGGCGACTCCGGAGTGGGCAAGTCGTGCCTGCTGCTGC
GTTTCGCAGACGACGCCTTTACGGACAGTTATATCAGCACCATCGGCGTA
GACTTCGTGAGTCAGCGGTGTTTACGCCATTTATAGGACAGTGGTTACAG
GTACAGGACTTTGCAGAGAGTTTACGATCTTTAAAATGGTTTGTGAGACA
GAAGCAGCAGTGGCGTCAGTACCATCAGCCGTAGACATCGTGGTTTCATC
ATTTATTTGTCAGATGGTTGGAACCGCTCGTGCGGGTGAAGTTACATACG
CACTTGCAGTAGTATCGGCGTACACGCTTGCCTAACTTGATTTTTCCGAA
AGACGAATCAGCGACGCAGCGACAAGAACTGCACAGAAAGGAGGCCGAAA
GAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCGATGGAAAACG
TCCATCACGACATCGCATCACGAAACGCAGACAGAAAGAAGACGAAGAAG
AGGTCCACGAGTAAACAACCTCAATACATGTAAACATAAGGCTCAAAGAT
ACTTCCTACTTCGAAGTACAAGAGACCATTGCTTTCCCGAACTTGAAATG
TCGTCAAGTAACATCCCCCCCCCCTCACCCCTTCTCTCCCGCGCGCACGT
GCTCTTCCCTCCTCTCCACTCTCACCACTCCGATGGGTTTGTTGCACGCT
CTGGTTTGTCCTGCTCAGCGTTTCCGAACGGTCAAGATCGACAAGAAGAC
CGTTAAGCTTCAGATTGTGAGTGGGAGGGGGCGCTTTGGATCGCGTTGCG
GGTGCGTTGGTAAAGGTGTTGCGGAATCGTTCATGCTGAGCTGCATATCG
TAGCCTTGTTCATACATAGCTTGACGGGTTTTTGTGACTCGATTTCTGTA
GTTATTGACTTCTCCCGATGCGTTACATGTATTGCCCTGCAACAGCTAGA
GCGTGCGAGTGGGAGACACTCGGCGACAAACTAGCTTTGAAGTGGCGCTC
TTGTGCGTGTGTGTGCGTATTTTTTCGTGCTTCCATATCTTTCTCTCGTC
GTGTCTAGTATCACTCCTTCGTTCACTCTGATATGTACAGCCGGGGGTCG
GGGGGATCACACGGAAGGATTACTTTCCTTGGAAGCCCCCCAGCTTTCTC
TGCGGTCCATGCACGCCTTCAGTTTTGTTTTGTCGCGAGGAGGGCTCAAC
ATTCCAGCAGTTTCTCTTGATGAACTAAGACTGGATGGTGTTTCCTGAAA
TGGTTACCGCAGGTCATGTGGCATAAGTCGTCCCCCGCACCCCCTCCAGG
CTTTTGGCTCATGTTCTACGAACAACATGTCAACGCCGTGTGTATGTTCT
CGTGCTTGTTGTGCTCTGCCTGTGTGGCTGCTGCTGTATCGTATCTGCCC
CCTTGAGACAGTGGGATACCGCGGGGCAGGAGCGTTTCCGGACGATCACA
TCGGCCTACTACAGGGGTGCGGATGGGATCATCATGGTGTATGACGTCAC
GGGACAGGTGTGAAACCGATAATACGAACACGAAACGACACGTCGAAACA
ACCGAAACCGAAGGCGAAATTGCTCTACGCATCTTTCTCTCGTCGAGCTG
TCGGTGTACGTAGGACAGCAGTATGTGAGCATGCGGAAGGAGTGCGTGCA
AGTGGGTCTCTCGAGATTTGCACCGCACGATTGCTCCAGTTTTGTGTGAA
ATTCATTTCCACTGTTTTTGTCACATGCTCACAACTCTGCCGGTCTACAC
TGCACTGCTGTGTACCACACCTGTCCTGCTTTGTGACCGACCAAAGTTCT
GCTTTGGTTTACATTCCTGATGTATGTTTCTCGGGCAAGATTTCAGAGAG
AGAGAGAGACTCGACGTGGGTGGCATGGAATGGCGCCCTAGGCTTCTTGA
AGTAATCCAGCTCGTGGTTTACTGATTTTGTGGTATCTTCCTCGGTTGTG
CAGACTACAGTGTACGTGATATTAGCCCTACATACCACGATACGACGCAT
GAACGCGATTGTCTACCGCGACAGCGCCAGATATAGGTGTCGTTGCTCGC
GTCTATCATGCCAGGACTGTTACCGAGCTCCTGTCTTTTTTCATTTTACT
GCTGTGCTCTCGCTGCCAGGAATCTTTCGACCATGTGAACGATTGGCTGA
GCGAAGTCAACCGTTACGCTAGCGAGGGCACAAGCAAGCTCCTAATAGGT
GAGGATGTTGTCTCATGTGGCATACGCATGTGTGTGTGTATTTGTGCGGA
CCTGTTCGGAATGTGGTGGCGACAACAGCGAGCGGAAAAAGGGGTTTTTA
TTGATGTCGCCATGTTGGCCACAGGAAGGGAAAAAAAGTCACGGTTATGA
CATCGGCGAACGCCTCCCCGATAGCGAACTCCCCGGAGCGCTGTAAAAAA
AAAACTGGACATCCTGAGCGCCCTTTTTAGTGGCGACGGAAAGTCAGTTG
TCTTTCACCGCTGTGGATCAGCATGGAAAGTGCAGATAATATCGAAGTAG
ACGGATAGATATTTGGCACAACGGGACTCAGTGTTGAGTAACAAAACTGA
GCATTATAACAATGCTGTCGGCCAAAACTTATGAACCAACAGCAACACCC
ACACACGAAATCACGACGAAAAAACTCAGTGTCGACCAAAACTACTGAAC
AAACACCAGCAGTAGCAGTGACGACTACAGCCCACCACAGTGCAACAAAA
CAACGACAACCTTATGTAGGTATTCGTACATCAGTGTCGACCAAAACAAC
TCAACAACACACCAACAACACAAACAGCAGCAACCACAACGACCAGCAAC
AACACCAAACATATTTTGGCAGGCAACAAGAGCGATCGCGAGGACAAGGT
GGTGGACAGTGCGGCCGCAAAGGAGTACGCGGAGTCGTTGGGCATTCCCT
TCTTGGAGACGAGCGCCAAAAGCGCGTCGAACGTGGAGGAGGCGTTTCTA
ACCATGGCCTCGGAGCTCATCCGGACCAGGTACTCGTACAACAGCAGTGT
CGTATGAACTCGAAGTACGAAGTACCAAGAGCATGACAGCGTTTGGTCTT
TCCTCATGAGCAAGAGTTTGTGGTATGCTCGTGATGACCCGTCACATCAT
GCAGACTTCGTCCCAACGTGGTCCGATGCGCGTGATGTAAGAGCGTATCG
TCTTGGCGCGCACGAAAAGGGTCAAGTGGTGTATAGATAGCGCACGCATT
GCCTGGTGCGGAGGAGAAGGAAACCTGCGTGCGGCGGCCGAACCCCCCCC
CCCCCCCCCCCCCCCACACACACACACACGCACGCGCGTGGAAGGAGTCT
CGTCGTTCCTTGCCAGGGCCTTGCAGCTCTCACCCGCACCAGGCGATCGT
CTGGTGTGTGCGTGGTTAATGCACGTAGGAAAAGGTCTTGGTGACGGAGG
AAGTATAAGTTAGTTACACGCGGACGTAATTTGTTGAGGTTGCCAAATCT
GGTTCCATCGGCGCCGGGTACGCACGTGAAGGCCGTGTGGTGTGCGTGAC
GAACGGCAGGTCTTATTGCTTAACAACGCTGGGCTGCGTAGTCATTTCCG
TCATATCAGGCTGCTTGCATGCACGCAAGCAGGAGCCGTAGAATACTGAA
AGGCGGCATGCGCTTACACGCGTTCACCAAGCTCGAATACATAGTCACGT
TTCGTATTCGATTTTCGTTATCGTCCATAATTGGAAGCCGCACTTGGTTG
CGTGGCGTCTCATCTGCTTTCAAGTGCTTCGTACTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCAGGGCGACGTTTCTCAGCGAACCTTTGCCTCCAAAA
CCCTCCAAACACACAAACCATGTCGCTCCCTTTGATCAGTATCGCCCCGC
CGCTTTTTTTTCCCTTTTTCTCGACTTCGGAACAACCCTAGGGAAGCGCG
AGCTGCAACGCAGGTGGACAACCCCACGGTGCAGTTGGGCGGAAGCGGTA
GCGGCGCATCCTCGAATTCCAAATGCTGCTGATGAGCCCCCCGCATCGGC
CTATTTCTGTGTCATTCCTAGTATGGGTTGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig174:110592..118872+

>mRNA_P-littoralis_Contig174.24.2 ID=mRNA_P-littoralis_Contig174.24.2|Name=mRNA_P-littoralis_Contig174.24.2|organism=Pylaiella littoralis U1_48|type=CDS|length=669bp|location=Sequence derived from alignment at P-littoralis_Contig174:110592..118872+ (Pylaiella littoralis U1_48)
ATGTACAGGATGGGCAAGACAGGGAAAGCGAATATATTCCCCACTAGGCT
CAGCAACAGCGGCACCCGTGTAATTTGTGATCACCTCTTCAAGCTGGTGC
TCATCGGCGACTCCGGAGTGGGCAAGTCGTGCCTGCTGCTGCGTTTCGCA
GACGACGCCTTTACGGACAGTTATATCAGCACCATCGGCGTAGACTTCCG
TTTCCGAACGGTCAAGATCGACAAGAAGACCGTTAAGCTTCAGATTTGGG
ATACCGCGGGGCAGGAGCGTTTCCGGACGATCACATCGGCCTACTACAGG
GGTGCGGATGGGATCATCATGGTGTATGACGTCACGGGACAGGAATCTTT
CGACCATGTGAACGATTGGCTGAGCGAAGTCAACCGTTACGCTAGCGAGG
GCACAAGCAAGCTCCTAATAGGCAACAAGAGCGATCGCGAGGACAAGGTG
GTGGACAGTGCGGCCGCAAAGGAGTACGCGGAGTCGTTGGGCATTCCCTT
CTTGGAGACGAGCGCCAAAAGCGCGTCGAACGTGGAGGAGGCGTTTCTAA
CCATGGCCTCGGAGCTCATCCGGACCAGGGAAGCGCGAGCTGCAACGCAG
GTGGACAACCCCACGGTGCAGTTGGGCGGAAGCGGTAGCGGCGCATCCTC
GAATTCCAAATGCTGCTGA
back to top