mRNA_P-littoralis_Contig174.16.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig174.16.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI) HSP 1 Score: 135 bits (340), Expect = 2.580e-35 Identity = 69/135 (51.11%), Postives = 88/135 (65.19%), Query Frame = 1
Query: 1 EWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARNGDGEAIAVDPKVSREVFEFVPRKYQNCRMED 405
EW+ FVD +K +SA A+ + EL +V EV RR++ G GLLF TKVF EF LE GY+HILS+PFLLGAY GD P E LRV+ E+ AV+ +WA C +G D KV+ EVF F+ +K+ NCRM D
Sbjct: 228 EWVSFVDLNKSASAGAAVEKDKELEHLVGEVKRRHDEINGAGLLFATKVFFEFTYALEIGYFHILSKPFLLGAYLGDLPGETLRVVREATAVRDAWAECCPPSSGSVN-FEWDSKVAHEVFLFIVQKWHNCRMGD 361
BLAST of mRNA_P-littoralis_Contig174.16.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE) HSP 1 Score: 131 bits (329), Expect = 8.540e-34 Identity = 63/116 (54.31%), Postives = 80/116 (68.97%), Query Frame = 1
Query: 1 EWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARNGDGEAIAVDPKV 348
EWMW VDRHKY S + A E EL V EV RRN+P GL+F T +FL+ +LTLESGY+H+LSQP LG+Y G+ PEEILR++ ESP VQ +W AC AR +G + DP++
Sbjct: 237 EWMWIVDRHKYPSKRAAEGNEMELRGVTEEVQRRNDPTRPRGLVFVTSLFLKLLLTLESGYFHVLSQPAFLGSYLGNLPEEILRLVSESPTVQRAWDACCQAR--EGGSFHADPEM 350
BLAST of mRNA_P-littoralis_Contig174.16.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE) HSP 1 Score: 125 bits (314), Expect = 6.780e-31 Identity = 65/165 (39.39%), Postives = 97/165 (58.79%), Query Frame = 1
Query: 1 EWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARNGDGEAIAVDPKVSREVFEFVPRKYQNCRMEDWTRRVSRMTSMSKAQASVALRTELKVTSDK 495
EW + V + S+ AI + L D+V EVD RN+P G GLLFPT + EFV +E+G YH L P+ LG Y GD EILRV+ ES V+ +WA C + P++ ++++FV +K+ N RM D+ RR+S+ +++ ++ +ALR L+ TS K
Sbjct: 167 EWDFIVQHNHSPSSAGAIERDPILQDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHVENGIYHFLRDPYFLGTYLGDLSAEILRVVTESSEVRRAWAKCCPSAVAP-PPFEAQPEILDDIYKFVLQKFHNVRMGDFARRLSQNSTLRLSKGELALRQNLRATSAK 330
BLAST of mRNA_P-littoralis_Contig174.16.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI) HSP 1 Score: 107 bits (266), Expect = 4.990e-25 Identity = 55/121 (45.45%), Postives = 73/121 (60.33%), Query Frame = 1
Query: 1 EWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARNGDGEAIAVDPKVSREVF 363
EW+ FVD +K +S A+ + EL +V EV RRN+ G GLLF TK F EF E GY+HILS+PFLLGAY P ++LRV+ E+ ++ +WA C +G D KV+ EVF
Sbjct: 170 EWVSFVDLNKSASEGAAVEKDKELEHLVGEVKRRNDEINGAGLLFATKAFFEFTYASEIGYFHILSKPFLLGAYLVGLPGDMLRVVSEATEIRDAWAECCPPSSGSVN-FEWDSKVAHEVF 289
BLAST of mRNA_P-littoralis_Contig174.16.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 3.130e-9 Identity = 42/132 (31.82%), Postives = 62/132 (46.97%), Query Frame = 1
Query: 1 EWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARNGDGEAIAVDPKVSREVFEFVPRKYQNCR 396
EW + V + S+ AI + L D+V EVD RN+P G GLLFPT + LS+ D P EILRVI ES V+ +W C + P++ ++++FV +K+ + R
Sbjct: 182 EWDFIVQHNHSPSSAGAIERDPILKDMVGEVDARNDPAAGAGLLFPTLAWY-------------LSR---------DLPAEILRVITESSEVRRAWGKCCPSAVAH-PPFEAQPEILDDIYKFVLQKFHSFR 290 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig174.16.1 >prot_P-littoralis_Contig174.16.1 ID=prot_P-littoralis_Contig174.16.1|Name=mRNA_P-littoralis_Contig174.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=166bp MWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEback to top mRNA from alignment at P-littoralis_Contig174:69350..69853+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig174.16.1 ID=mRNA_P-littoralis_Contig174.16.1|Name=mRNA_P-littoralis_Contig174.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=504bp|location=Sequence derived from alignment at P-littoralis_Contig174:69350..69853+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig174:69350..69853+ >mRNA_P-littoralis_Contig174.16.1 ID=mRNA_P-littoralis_Contig174.16.1|Name=mRNA_P-littoralis_Contig174.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig174:69350..69853+ (Pylaiella littoralis U1_48)back to top |