mRNA_P-littoralis_Contig174.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.15.1
Unique NamemRNA_P-littoralis_Contig174.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig174.15.1 vs. uniprot
Match: D7FQM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM3_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 7.020e-12
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:   55 LADPEAIVQRLVDAVDRLFTEHYRELIPLWDMTKGLAATRKVILDEWTSLVDILAATSKGKGTTKEASKFTLERFGRW 288
            + D   + +++  A + LF EH+  L+ LW   K LA TR      W  LVD+ A  SKGKG+TKEAS FTL RF  W
Sbjct:   43 IRDAADVGEKVDAAAEGLFREHFPWLLDLWIQVKSLAPTRLFNATSWALLVDVQARVSKGKGSTKEASNFTLARFASW 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQM3_ECTSI7.020e-1244.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:68362..69257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size475
Hectar predicted targeting categoryother localisation
Exons2
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789836.3750582-CDS-P-littoralis_Contig174:68361..686731680789836.3750582-CDS-P-littoralis_Contig174:68361..68673Pylaiella littoralis U1_48CDSP-littoralis_Contig174 68362..68673 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789836.3854313-UTR-P-littoralis_Contig174:68673..687531680789836.3854313-UTR-P-littoralis_Contig174:68673..68753Pylaiella littoralis U1_48UTRP-littoralis_Contig174 68674..68753 +
1680789836.3963625-UTR-P-littoralis_Contig174:69175..692571680789836.3963625-UTR-P-littoralis_Contig174:69175..69257Pylaiella littoralis U1_48UTRP-littoralis_Contig174 69176..69257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.15.1prot_P-littoralis_Contig174.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 68362..68673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.15.1

>prot_P-littoralis_Contig174.15.1 ID=prot_P-littoralis_Contig174.15.1|Name=mRNA_P-littoralis_Contig174.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
GTASSRTQALLDAHADKLLADPEAIVQRLVDAVDRLFTEHYRELIPLWDM
TKGLAATRKVILDEWTSLVDILAATSKGKGTTKEASKFTLERFGRWGALC
NGG*
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mRNA from alignment at P-littoralis_Contig174:68362..69257+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.15.1 ID=mRNA_P-littoralis_Contig174.15.1|Name=mRNA_P-littoralis_Contig174.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=896bp|location=Sequence derived from alignment at P-littoralis_Contig174:68362..69257+ (Pylaiella littoralis U1_48)
GGGACCGCCAGCTCCCGGACGCAGGCCTTGTTGGATGCCCACGCAGACAA
GCTGCTGGCGGACCCGGAAGCCATCGTTCAGCGTCTCGTGGATGCCGTCG
ATCGACTTTTCACCGAGCACTACAGAGAGTTGATTCCCCTTTGGGATATG
ACGAAGGGTCTGGCGGCCACGCGCAAGGTAATCCTCGACGAGTGGACATC
ATTGGTTGACATCCTCGCAGCAACGAGCAAGGGGAAAGGGACGACGAAGG
AGGCTTCCAAGTTCACGTTGGAGCGCTTCGGGCGATGGGGGGCACTTTGC
AATGGTGGCTAGGTCACTATGAGGTCCAGGAGGCGGTGGAGCGCGAGCCC
AAGGACCTCACCCTCCACCGGCTGGCGGGCATCATCGGCCAGGTGGACGA
GGTATGGGCATATGTTCTGCTGTTGTTGCATTGTGTTTCGTTGGTCGTGT
AAAATTTGCGCCTGCATGTGTGGGCGCAAATGTGTATGTTTACTTTGCGG
ATGGGGGGGCTCACCAGAGTGTCTCACCTCTCAATTTTCTCACGGGTCAT
ACGGCATACTCCAAGAGTTCTTGCATGCCTTGCGGCGCTTCGAAAGACGC
GCGGAGTCTGGTAGGTTCTTCATGTGTAGCTGGACTGAAAAGCAATTATT
TGGCCTACGCTCGTTTGTTTCAGCAGTGAGGGCTGGAATGATGCTCGCCG
TTAAATTTGTGGCGTTAATCTAGGCCTGATCTTTTACAAACCCTCGTGCC
GTCGTGCGTCCTCGCCCGTTGTTCGCTCCCGACTTGTTCCATCTGTCCGT
TTTCTGTTCCGAAGGAGCTGTACAGGCTGTTTGTCCAAGAGAAGAGGAAG
GCGAACTCGGTCACCCTCGAGTACCCGAAGCAACAGATAGCCATGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:68362..69257+

>mRNA_P-littoralis_Contig174.15.1 ID=mRNA_P-littoralis_Contig174.15.1|Name=mRNA_P-littoralis_Contig174.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig174:68362..69257+ (Pylaiella littoralis U1_48)
GGGACCGCCAGCTCCCGGACGCAGGCCTTGTTGGATGCCCACGCAGACAA
GCTGCTGGCGGACCCGGAAGCCATCGTTCAGCGTCTCGTGGATGCCGTCG
ATCGACTTTTCACCGAGCACTACAGAGAGTTGATTCCCCTTTGGGATATG
ACGAAGGGTCTGGCGGCCACGCGCAAGGTAATCCTCGACGAGTGGACATC
ATTGGTTGACATCCTCGCAGCAACGAGCAAGGGGAAAGGGACGACGAAGG
AGGCTTCCAAGTTCACGTTGGAGCGCTTCGGGCGATGGGGGGCACTTTGC
AATGGTGGCTAG
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