mRNA_P-littoralis_Contig174.138.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig174.138.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI) HSP 1 Score: 190 bits (482), Expect = 1.170e-55 Identity = 92/184 (50.00%), Postives = 124/184 (67.39%), Query Frame = 1
Query: 1 KRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKVSREVFEFVTRKYQNCRMGD 552
K++AN + L YP ++ ++ R ++LY+I+GWLLS++W HVRR K+ E EW+ FVD +K +SA A+ + EL +V EV RR++ G GLLF TKVF EF LE GY+HILS+PFLLGAY GD P E LRV+ E+ AV+ +WA C G D KV+ EVF F+ +K+ NCRMGD
Sbjct: 179 KKEANLIKLSYPDKKTRVTKPRAKVLYYISGWLLSKVWTHVRRQKIEEREWVSFVDLNKSASAGAAVEKDKELEHLVGEVKRRHDEINGAGLLFATKVFFEFTYALEIGYFHILSKPFLLGAYLGDLPGETLRVVREATAVRDAWAECCPPSSGSVN-FEWDSKVAHEVFLFIVQKWHNCRMGD 361
BLAST of mRNA_P-littoralis_Contig174.138.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE) HSP 1 Score: 174 bits (440), Expect = 1.810e-48 Identity = 87/212 (41.04%), Postives = 130/212 (61.32%), Query Frame = 1
Query: 7 KANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKVSREVFEFVTRKYQNCRMGDWTRRVSRMTSISKAQASVALRTELKVTSDK 642
K+N+V L YP + +S AR ++LY+IAGWLLS+ W RR+ + + EW + V + S+ AI + L D+V EVD RN+P G GLLFPT + EFV +E+G YH L P+ LG Y GD EILRV+ ES V+ +WA C + P++ ++++FV +K+ N RMGD+ RR+S+ +++ ++ +ALR L+ TS K
Sbjct: 120 KSNTVALTYPTEIHKISTARGKVLYYIAGWLLSKAWSRKRRHNIPDQEWDFIVQHNHSPSSAGAIERDPILQDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHVENGIYHFLRDPYFLGTYLGDLSAEILRVVTESSEVRRAWAKCCPSAVAP-PPFEAQPEILDDIYKFVLQKFHNVRMGDFARRLSQNSTLRLSKGELALRQNLRATSAK 330
BLAST of mRNA_P-littoralis_Contig174.138.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE) HSP 1 Score: 161 bits (408), Expect = 9.490e-45 Identity = 90/217 (41.47%), Postives = 119/217 (54.84%), Query Frame = 1
Query: 4 RKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEP----------------------------------------KGGT-------------GLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKV 495
R AN +T YP+ Q+A+S R R+LY+IAGW+LS+I HVRR+ + E+EWMW VDRHKY S + A E EL V EV RRN+P +G T GL+F T +FL+ +LTLESGY+H+LSQP LG+Y G+ PEEILR++ ESP VQ +W AC AR+G + DP++
Sbjct: 136 RDANVITPTYPRTQVALSIPRRRLLYYIAGWVLSKIVTHVRRHNIQEIEWMWIVDRHKYPSKRAAEENEMELRGVTEEVQRRNDPTRPRGLVFVTSLLQEIEWMWIVDRHKYPSKRAAEGNEMELRGVTEEVQRRNDPTRPRGLVFVTSLFLKLLLTLESGYFHVLSQPAFLGSYLGNLPEEILRLVSESPTVQRAWDACCQAREGG--SFHADPEM 350
BLAST of mRNA_P-littoralis_Contig174.138.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI) HSP 1 Score: 155 bits (391), Expect = 7.450e-43 Identity = 77/170 (45.29%), Postives = 106/170 (62.35%), Query Frame = 1
Query: 1 KRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKVSREVF 510
K++AN + L YP + ++ R ++LY+I+GWLLS+ W HVRR K+ E EW+ FVD +K +S A+ + EL +V EV RRN+ G GLLF TK F EF E GY+HILS+PFLLGAY P ++LRV+ E+ ++ +WA C G D KV+ EVF
Sbjct: 121 KKEANLIKLSYPDNKTRVTKPRAKVLYYISGWLLSKDWAHVRRQKIEEREWVSFVDLNKSASEGAAVEKDKELEHLVGEVKRRNDEINGAGLLFATKAFFEFTYASEIGYFHILSKPFLLGAYLVGLPGDMLRVVSEATEIRDAWAECCPPSSGSVN-FEWDSKVAHEVF 289
BLAST of mRNA_P-littoralis_Contig174.138.1 vs. uniprot
Match: A0A6H5KLR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR4_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 3.160e-11 Identity = 41/119 (34.45%), Postives = 61/119 (51.26%), Query Frame = 1
Query: 10 ANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGA 366
A+ V + YP + + + + R++Y IAGWLLS V R + ++ F + HK +SA++ + + V+ RN P G GL+F + F FV LESGY L P LL A
Sbjct: 149 AHLVKVAYPAEDVDLDVHQRRLVYNIAGWLLSSALSRVSRQRSLGSAFLPFFNSHKVASAEEFREAYPHFSGLEFVVEERNNPWEGKGLIFASADFFLFVRALESGYRSSLLNPALLAA 267
BLAST of mRNA_P-littoralis_Contig174.138.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 9.880e-9 Identity = 42/132 (31.82%), Postives = 62/132 (46.97%), Query Frame = 1
Query: 148 EWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKVSREVFEFVTRKYQNCR 543
EW + V + S+ AI + L D+V EVD RN+P G GLLFPT + LS+ D P EILRVI ES V+ +W C + P++ ++++FV +K+ + R
Sbjct: 182 EWDFIVQHNHSPSSAGAIERDPILKDMVGEVDARNDPAAGAGLLFPTLAWY-------------LSR---------DLPAEILRVITESSEVRRAWGKCCPSAVAH-PPFEAQPEILDDIYKFVLQKFHSFR 290 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig174.138.1 >prot_P-littoralis_Contig174.138.1 ID=prot_P-littoralis_Contig174.138.1|Name=mRNA_P-littoralis_Contig174.138.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=217bp KRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEback to top mRNA from alignment at P-littoralis_Contig174:455018..455669+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig174.138.1 ID=mRNA_P-littoralis_Contig174.138.1|Name=mRNA_P-littoralis_Contig174.138.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=652bp|location=Sequence derived from alignment at P-littoralis_Contig174:455018..455669+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig174:455018..455669+ >mRNA_P-littoralis_Contig174.138.1 ID=mRNA_P-littoralis_Contig174.138.1|Name=mRNA_P-littoralis_Contig174.138.1|organism=Pylaiella littoralis U1_48|type=CDS|length=651bp|location=Sequence derived from alignment at P-littoralis_Contig174:455018..455669+ (Pylaiella littoralis U1_48)back to top |