mRNA_P-littoralis_Contig174.138.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.138.1
Unique NamemRNA_P-littoralis_Contig174.138.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig174.138.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 1.170e-55
Identity = 92/184 (50.00%), Postives = 124/184 (67.39%), Query Frame = 1
Query:    1 KRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKVSREVFEFVTRKYQNCRMGD 552
            K++AN + L YP ++  ++  R ++LY+I+GWLLS++W HVRR K+ E EW+ FVD +K +SA  A+  + EL  +V EV RR++   G GLLF TKVF EF   LE GY+HILS+PFLLGAY GD P E LRV+ E+ AV+ +WA C     G       D KV+ EVF F+ +K+ NCRMGD
Sbjct:  179 KKEANLIKLSYPDKKTRVTKPRAKVLYYISGWLLSKVWTHVRRQKIEEREWVSFVDLNKSASAGAAVEKDKELEHLVGEVKRRHDEINGAGLLFATKVFFEFTYALEIGYFHILSKPFLLGAYLGDLPGETLRVVREATAVRDAWAECCPPSSGSVN-FEWDSKVAHEVFLFIVQKWHNCRMGD 361          
BLAST of mRNA_P-littoralis_Contig174.138.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 1.810e-48
Identity = 87/212 (41.04%), Postives = 130/212 (61.32%), Query Frame = 1
Query:    7 KANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKVSREVFEFVTRKYQNCRMGDWTRRVSRMTSISKAQASVALRTELKVTSDK 642
            K+N+V L YP +   +S AR ++LY+IAGWLLS+ W   RR+ + + EW + V  +   S+  AI  +  L D+V EVD RN+P  G GLLFPT  + EFV  +E+G YH L  P+ LG Y GD   EILRV+ ES  V+ +WA C  +           P++  ++++FV +K+ N RMGD+ RR+S+ +++  ++  +ALR  L+ TS K
Sbjct:  120 KSNTVALTYPTEIHKISTARGKVLYYIAGWLLSKAWSRKRRHNIPDQEWDFIVQHNHSPSSAGAIERDPILQDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHVENGIYHFLRDPYFLGTYLGDLSAEILRVVTESSEVRRAWAKCCPSAVAP-PPFEAQPEILDDIYKFVLQKFHNVRMGDFARRLSQNSTLRLSKGELALRQNLRATSAK 330          
BLAST of mRNA_P-littoralis_Contig174.138.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 9.490e-45
Identity = 90/217 (41.47%), Postives = 119/217 (54.84%), Query Frame = 1
Query:    4 RKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEP----------------------------------------KGGT-------------GLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKV 495
            R AN +T  YP+ Q+A+S  R R+LY+IAGW+LS+I  HVRR+ + E+EWMW VDRHKY S + A   E EL  V  EV RRN+P                                        +G T             GL+F T +FL+ +LTLESGY+H+LSQP  LG+Y G+ PEEILR++ ESP VQ +W AC  AR+G   +   DP++
Sbjct:  136 RDANVITPTYPRTQVALSIPRRRLLYYIAGWVLSKIVTHVRRHNIQEIEWMWIVDRHKYPSKRAAEENEMELRGVTEEVQRRNDPTRPRGLVFVTSLLQEIEWMWIVDRHKYPSKRAAEGNEMELRGVTEEVQRRNDPTRPRGLVFVTSLFLKLLLTLESGYFHVLSQPAFLGSYLGNLPEEILRLVSESPTVQRAWDACCQAREGG--SFHADPEM 350          
BLAST of mRNA_P-littoralis_Contig174.138.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 7.450e-43
Identity = 77/170 (45.29%), Postives = 106/170 (62.35%), Query Frame = 1
Query:    1 KRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKVSREVF 510
            K++AN + L YP  +  ++  R ++LY+I+GWLLS+ W HVRR K+ E EW+ FVD +K +S   A+  + EL  +V EV RRN+   G GLLF TK F EF    E GY+HILS+PFLLGAY    P ++LRV+ E+  ++ +WA C     G       D KV+ EVF
Sbjct:  121 KKEANLIKLSYPDNKTRVTKPRAKVLYYISGWLLSKDWAHVRRQKIEEREWVSFVDLNKSASEGAAVEKDKELEHLVGEVKRRNDEINGAGLLFATKAFFEFTYASEIGYFHILSKPFLLGAYLVGLPGDMLRVVSEATEIRDAWAECCPPSSGSVN-FEWDSKVAHEVF 289          
BLAST of mRNA_P-littoralis_Contig174.138.1 vs. uniprot
Match: A0A6H5KLR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR4_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.160e-11
Identity = 41/119 (34.45%), Postives = 61/119 (51.26%), Query Frame = 1
Query:   10 ANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGA 366
            A+ V + YP + + +   + R++Y IAGWLLS     V R +     ++ F + HK +SA++        + +   V+ RN P  G GL+F +  F  FV  LESGY   L  P LL A
Sbjct:  149 AHLVKVAYPAEDVDLDVHQRRLVYNIAGWLLSSALSRVSRQRSLGSAFLPFFNSHKVASAEEFREAYPHFSGLEFVVEERNNPWEGKGLIFASADFFLFVRALESGYRSSLLNPALLAA 267          
BLAST of mRNA_P-littoralis_Contig174.138.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 9.880e-9
Identity = 42/132 (31.82%), Postives = 62/132 (46.97%), Query Frame = 1
Query:  148 EWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKVSREVFEFVTRKYQNCR 543
            EW + V  +   S+  AI  +  L D+V EVD RN+P  G GLLFPT  +              LS+         D P EILRVI ES  V+ +W  C  +           P++  ++++FV +K+ + R
Sbjct:  182 EWDFIVQHNHSPSSAGAIERDPILKDMVGEVDARNDPAAGAGLLFPTLAWY-------------LSR---------DLPAEILRVITESSEVRRAWGKCCPSAVAH-PPFEAQPEILDDIYKFVLQKFHSFR 290          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FVM7_ECTSI1.170e-5550.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW14_9PHAE1.810e-4841.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7M3_9PHAE9.490e-4541.47Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G5R0_ECTSI7.450e-4345.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLR4_9PHAE3.160e-1134.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K2_9PHAE9.880e-931.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:455018..455669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size653
Hectar predicted targeting categoryother localisation
Exons1
Cds size651
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789840.9039342-CDS-P-littoralis_Contig174:455017..4556681680789840.9039342-CDS-P-littoralis_Contig174:455017..455668Pylaiella littoralis U1_48CDSP-littoralis_Contig174 455018..455668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.138.1prot_P-littoralis_Contig174.138.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 455018..455668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.138.1

>prot_P-littoralis_Contig174.138.1 ID=prot_P-littoralis_Contig174.138.1|Name=mRNA_P-littoralis_Contig174.138.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=217bp
KRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVE
WMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFL
EFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWT
ARDGDGEAIAVDPKVSREVFEFVTRKYQNCRMGDWTRRVSRMTSISKAQA
SVALRTELKVTSDKAGG
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mRNA from alignment at P-littoralis_Contig174:455018..455669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.138.1 ID=mRNA_P-littoralis_Contig174.138.1|Name=mRNA_P-littoralis_Contig174.138.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=652bp|location=Sequence derived from alignment at P-littoralis_Contig174:455018..455669+ (Pylaiella littoralis U1_48)
AAGAGGAAGGCGAACTCGGTCACCCTCGAGTACCCGAAGCAACAGATAGC CATGTCGCCAGCGCGCATGCGGATCTTGTACTTCATCGCCGGGTGGTTGT TGAGCAGGATTTGGAAACACGTCCGTAGGAACAAGGTGGGGGAGGTCGAA TGGATGTGGTTCGTGGATCGCCACAAGTACTCGTCCGCGCAGGACGCCAT ACGGTGCGAGGGAGAACTGACCGATGTCGTGCGTGAGGTAGATCGGAGGA ACGAACCAAAGGGGGGTACGGGACTGTTGTTTCCCACTAAAGTGTTCCTC GAATTCGTTTTGACGCTCGAGTCTGGGTACTACCACATCCTGTCACAGCC ATTTCTTTTGGGCGCGTATCGCGGCGACTTTCCGGAGGAGATTTTGCGGG TGATACTAGAATCACCCGCAGTTCAAAGTAGTTGGGCAGCTTGCTGGACG GCTCGTGACGGGGACGGTGAAGCCATCGCTGTTGATCCCAAAGTGTCACG TGAAGTGTTCGAATTCGTGACTCGTAAATACCAGAATTGCCGTATGGGAG ACTGGACCCGGCGTGTTAGTCGTATGACCTCCATTAGCAAAGCGCAGGCA TCGGTTGCGCTGCGCACGGAACTTAAGGTTACGAGTGACAAGGCGGGCGG GG
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:455018..455669+

>mRNA_P-littoralis_Contig174.138.1 ID=mRNA_P-littoralis_Contig174.138.1|Name=mRNA_P-littoralis_Contig174.138.1|organism=Pylaiella littoralis U1_48|type=CDS|length=651bp|location=Sequence derived from alignment at P-littoralis_Contig174:455018..455669+ (Pylaiella littoralis U1_48)
AAGAGGAAGGCGAACTCGGTCACCCTCGAGTACCCGAAGCAACAGATAGC
CATGTCGCCAGCGCGCATGCGGATCTTGTACTTCATCGCCGGGTGGTTGT
TGAGCAGGATTTGGAAACACGTCCGTAGGAACAAGGTGGGGGAGGTCGAA
TGGATGTGGTTCGTGGATCGCCACAAGTACTCGTCCGCGCAGGACGCCAT
ACGGTGCGAGGGAGAACTGACCGATGTCGTGCGTGAGGTAGATCGGAGGA
ACGAACCAAAGGGGGGTACGGGACTGTTGTTTCCCACTAAAGTGTTCCTC
GAATTCGTTTTGACGCTCGAGTCTGGGTACTACCACATCCTGTCACAGCC
ATTTCTTTTGGGCGCGTATCGCGGCGACTTTCCGGAGGAGATTTTGCGGG
TGATACTAGAATCACCCGCAGTTCAAAGTAGTTGGGCAGCTTGCTGGACG
GCTCGTGACGGGGACGGTGAAGCCATCGCTGTTGATCCCAAAGTGTCACG
TGAAGTGTTCGAATTCGTGACTCGTAAATACCAGAATTGCCGTATGGGAG
ACTGGACCCGGCGTGTTAGTCGTATGACCTCCATTAGCAAAGCGCAGGCA
TCGGTTGCGCTGCGCACGGAACTTAAGGTTACGAGTGACAAGGCGGGCGG
G
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