mRNA_P-littoralis_Contig174.135.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.135.1
Unique NamemRNA_P-littoralis_Contig174.135.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:453833..454415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size269
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789840.8530462-CDS-P-littoralis_Contig174:453832..4538621680789840.8530462-CDS-P-littoralis_Contig174:453832..453862Pylaiella littoralis U1_48CDSP-littoralis_Contig174 453833..453862 +
1680789840.8678463-CDS-P-littoralis_Contig174:454176..4544131680789840.8678463-CDS-P-littoralis_Contig174:454176..454413Pylaiella littoralis U1_48CDSP-littoralis_Contig174 454177..454413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.135.1prot_P-littoralis_Contig174.135.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 453833..454413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.135.1

>prot_P-littoralis_Contig174.135.1 ID=prot_P-littoralis_Contig174.135.1|Name=mRNA_P-littoralis_Contig174.135.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
RDDDNGQGQLGTASSRTQALLDAHADKLLADPEAIVQRLVDAVDRLFTEH
YRELIPLWDMTKGLAATRKVILDEWTSLVDILAATSKGK
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mRNA from alignment at P-littoralis_Contig174:453833..454415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.135.1 ID=mRNA_P-littoralis_Contig174.135.1|Name=mRNA_P-littoralis_Contig174.135.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=583bp|location=Sequence derived from alignment at P-littoralis_Contig174:453833..454415+ (Pylaiella littoralis U1_48)
CGTGACGACGACAACGGACAGGGTCAGCTGGTCAGTTTCGATTCTGCCAC
ATCCAAAACTCATACTCCCGTAGCCCTCGTCTGTGGCGATTTATGGGATC
GGAGTTCAGGCGTGTTCGTTTGACAAAGGATTGAAAAAGATTTATCTCGT
TAATTCTCTGCCATGTTGTCGGTTCGCCGCACACCGTCTTCTGTCACATT
CGAGCTCATGGTGGTACTCGCGAATAGGGCTCTATAGTTTCTGTGAGTTC
CGGACAACATCTCTCAAATGCCTGCCCTTGGCATGTCCCACCCCCTAAAC
CAGCTTTGCCTCGTGCTTTCTTTGGCTGTACCTTTCAACGGCAGGGGACC
GCCAGCTCCCGGACGCAGGCCTTGTTGGATGCCCACGCAGACAAGCTGCT
GGCGGACCCGGAAGCCATCGTTCAGCGTCTCGTGGATGCCGTCGATCGAC
TTTTCACCGAGCACTACAGAGAGTTGATTCCCCTTTGGGATATGACGAAG
GGTCTGGCGGCCACGCGCAAGGTAATCCTCGACGAGTGGACATCATTGGT
TGACATCCTCGCAGCAACGAGCAAGGGGAAAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:453833..454415+

>mRNA_P-littoralis_Contig174.135.1 ID=mRNA_P-littoralis_Contig174.135.1|Name=mRNA_P-littoralis_Contig174.135.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig174:453833..454415+ (Pylaiella littoralis U1_48)
CGTGACGACGACAACGGACAGGGTCAGCTGGGGACCGCCAGCTCCCGGAC
GCAGGCCTTGTTGGATGCCCACGCAGACAAGCTGCTGGCGGACCCGGAAG
CCATCGTTCAGCGTCTCGTGGATGCCGTCGATCGACTTTTCACCGAGCAC
TACAGAGAGTTGATTCCCCTTTGGGATATGACGAAGGGTCTGGCGGCCAC
GCGCAAGGTAATCCTCGACGAGTGGACATCATTGGTTGACATCCTCGCAG
CAACGAGCAAGGGGAAA
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