mRNA_P-littoralis_Contig174.134.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.134.1
Unique NamemRNA_P-littoralis_Contig174.134.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:453219..453837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size213
Hectar predicted targeting categoryother localisation
Exons3
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789835.4470108-UTR-P-littoralis_Contig174:453218..4532241680789835.4470108-UTR-P-littoralis_Contig174:453218..453224Pylaiella littoralis U1_48UTRP-littoralis_Contig174 453219..453224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789835.459281-CDS-P-littoralis_Contig174:453224..4533171680789835.459281-CDS-P-littoralis_Contig174:453224..453317Pylaiella littoralis U1_48CDSP-littoralis_Contig174 453225..453317 +
1680789835.4741623-CDS-P-littoralis_Contig174:453489..4535561680789835.4741623-CDS-P-littoralis_Contig174:453489..453556Pylaiella littoralis U1_48CDSP-littoralis_Contig174 453490..453556 +
1680789835.4838674-CDS-P-littoralis_Contig174:453790..4538371680789835.4838674-CDS-P-littoralis_Contig174:453790..453837Pylaiella littoralis U1_48CDSP-littoralis_Contig174 453791..453837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.134.1prot_P-littoralis_Contig174.134.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 453225..453837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.134.1

>prot_P-littoralis_Contig174.134.1 ID=prot_P-littoralis_Contig174.134.1|Name=mRNA_P-littoralis_Contig174.134.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
METEDVRDAAEAGAAAVEDMSPVPARRMFAEGDEEYGDDEDDVVAINNSD
RKRGEPHEEDEEGEVLAA*
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mRNA from alignment at P-littoralis_Contig174:453219..453837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.134.1 ID=mRNA_P-littoralis_Contig174.134.1|Name=mRNA_P-littoralis_Contig174.134.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=619bp|location=Sequence derived from alignment at P-littoralis_Contig174:453219..453837+ (Pylaiella littoralis U1_48)
TCAGCCATGGAGACGGAAGATGTGCGAGACGCCGCCGAAGCCGGAGCGGC
TGCGGTTGAAGACATGTCGCCTGTTCCGGCGAGACGGATGTTCGCCGAGG
TAAGACAGCGACCCTTGCATGCAAGACCTTGGTTTCTCTGGCTCAGAATA
AGCATGTTGTGCTTTCATCGGCTGGCAATTGGGGCGCTTCTTCCGCGACA
TGTCCGCCTACGCACCCGTTAAAccCCCCCCCGTCCTTGGGCCCCCCATC
TCTGTACGTTGCCCATACCAGGGGGATGAAGAGTACGGGGACGACGAGGA
TGACGTCGTGGCTATCAACAACTCAGATCGTAAAAGAGGTGCGTGATTAT
GTTGTTGTCTGGTATCCCGCCGATGTGTGAGGGGGGGACCTCGGGGCGTT
CACGACTCGCGTTGGCACGTTCGGATCGGGGCGGGAAGGAGCGTTACCAT
CAGGGATGAGAGAATAAAGTGGAGGTGCCTGTAGAGAATCGCGACTGTTC
AAAAGTCCGCAATAAAGAAGCGGTACGCTTAACTGCGAGGGCGCCTGATT
TCGTCTCATGAAATTAATGCAGGCGAACCCCACGAAGAAGACGAGGAGGG
GGAGGTCCTCGCTGCGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:453219..453837+

>mRNA_P-littoralis_Contig174.134.1 ID=mRNA_P-littoralis_Contig174.134.1|Name=mRNA_P-littoralis_Contig174.134.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig174:453219..453837+ (Pylaiella littoralis U1_48)
ATGGAGACGGAAGATGTGCGAGACGCCGCCGAAGCCGGAGCGGCTGCGGT
TGAAGACATGTCGCCTGTTCCGGCGAGACGGATGTTCGCCGAGGGGGATG
AAGAGTACGGGGACGACGAGGATGACGTCGTGGCTATCAACAACTCAGAT
CGTAAAAGAGGCGAACCCCACGAAGAAGACGAGGAGGGGGAGGTCCTCGC
TGCGTGA
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