mRNA_P-littoralis_Contig174.115.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.115.1
Unique NamemRNA_P-littoralis_Contig174.115.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:419145..419717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size273
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789835.3882532-CDS-P-littoralis_Contig174:419144..4192461680789835.3882532-CDS-P-littoralis_Contig174:419144..419246Pylaiella littoralis U1_48CDSP-littoralis_Contig174 419145..419246 -
1680789835.4007747-CDS-P-littoralis_Contig174:419548..4196231680789835.4007747-CDS-P-littoralis_Contig174:419548..419623Pylaiella littoralis U1_48CDSP-littoralis_Contig174 419549..419623 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789835.4103003-UTR-P-littoralis_Contig174:419623..4197171680789835.4103003-UTR-P-littoralis_Contig174:419623..419717Pylaiella littoralis U1_48UTRP-littoralis_Contig174 419624..419717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.115.1prot_P-littoralis_Contig174.115.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 419145..419623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.115.1

>prot_P-littoralis_Contig174.115.1 ID=prot_P-littoralis_Contig174.115.1|Name=mRNA_P-littoralis_Contig174.115.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp
MTKRLGSRKTPSLTPCAAEGISMQQVLHPMMAEILRQGQAHMIRDLDAVR
LSTGEDDDE
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mRNA from alignment at P-littoralis_Contig174:419145..419717-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.115.1 ID=mRNA_P-littoralis_Contig174.115.1|Name=mRNA_P-littoralis_Contig174.115.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=573bp|location=Sequence derived from alignment at P-littoralis_Contig174:419145..419717- (Pylaiella littoralis U1_48)
CATCAACGCGAGGGTCATCCCATAGCCGCGACAAAATGGCAAACATGCTA
ACAAGTAATGTCTTTGTCCCACCTCCTGCGTTTTTGAAAGGGCGATGACC
AAAAGGCTAGGATCACGGAAGACGCCCTCGCTGACACCCTGCGCTGCGGA
AGGCATTTCGATGCAACAGGCGCGGCTGTGCTTCACGAGCACGTCCTCGC
GTGCCCCCGGTCCTTGTTCTTCGACATGGTAAATATGTACTAATACTTCG
AAGTATATTATTTTCTGTGTGCTCGTTCGCTTGTGATTTGTTTTGTTTTG
TGCCCATTAACTCCATGCCGACGTGACTAGAAATGGATGTCATTCTTGCC
GTACTATTAGGATACTGCGTCGACTGTCCTAGCCTTCACGCCGTGCATCC
GGGGAAATATGCTCAATAATTGCATGTGTTGACTTCTACCCTCACGGTCA
ATCCCCTTGGTGCGACGACAGGTCCTGCACCCGATGATGGCGGAGATCCT
GCGCCAGGGACAGGCCCACATGATACGTGATCTCGACGCGGTGCGGCTGT
CCACGGGGGAAGACGACGACGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:419145..419717-

>mRNA_P-littoralis_Contig174.115.1 ID=mRNA_P-littoralis_Contig174.115.1|Name=mRNA_P-littoralis_Contig174.115.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig174:419145..419717- (Pylaiella littoralis U1_48)
ATGACCAAAAGGCTAGGATCACGGAAGACGCCCTCGCTGACACCCTGCGC
TGCGGAAGGCATTTCGATGCAACAGGTCCTGCACCCGATGATGGCGGAGA
TCCTGCGCCAGGGACAGGCCCACATGATACGTGATCTCGACGCGGTGCGG
CTGTCCACGGGGGAAGACGACGACGAG
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