mRNA_P-littoralis_Contig174.100.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.100.1
Unique NamemRNA_P-littoralis_Contig174.100.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig174.100.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 7.690e-48
Identity = 80/151 (52.98%), Postives = 101/151 (66.89%), Query Frame = 3 
Query:  474 QVNDLMDYLDVGGLILDCCGSTGDAVCRVLTERGLRVQSNDINRRLRVDTHFDTSGADFVQAYGQGDNRPDWVVTSTPYKNAFAILKQALHVATVGVVFKLRLSFLEPTKTRGQWLKDNPPALTIVLPRAAYRGRTCNVPEAWFMWYTGEE 926
            +V+ L+  + + G +LD CGS  DA+  VL    L V +ND N RL  DTH D +  +F   +     RPDW+VTS PY NAF+IL +AL V  VGV FKLRLSFLEPTKTRG+WLKDNPP+  +VLPRA Y GR C+  EAWF+W+   +
Sbjct:   14 KVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHLASD 164
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BLAST of mRNA_P-littoralis_Contig174.100.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 2.800e-22
Identity = 65/165 (39.39%), Postives = 89/165 (53.94%), Query Frame = 3 
Query:  375 QQVRKPRAAAAGSSSLMETGQRGLLGRYPSLPQQVNDLMDYLDVGGLILDCCGSTGDAVCRVLTERGLRVQSNDINRRLRV-----DTHFDTSGADFVQAY--GQGDNRPDWVVTSTPYKNAFAILKQALHVATVGVVFKLRLSFLEPTKTRGQWLKDNPPALTI 848
            QQ+ +  A   G     +  +R  L RY + P+ V  L+  +++ G +LD CG  GDA+   L     +V +NDI+ RL       DT+ D S A F   +   +   RPDWV+TS PYK A   +K AL +A  GV  KL LSFLEP   RG WL+ NPPA+ +
Sbjct:   56 QQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGAT-CKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCV 219
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BLAST of mRNA_P-littoralis_Contig174.100.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.310e-14
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 3 
Query:  756 VGVVFKLRLSFLEPTKTRGQWLKDNPPALTIVLPRAAYRGRTCNVPEAWFMWYT 917
            +GV FKLRL+FL P K+RG+WLKDNPP   ++LPRA YR R C+  E WF+W T
Sbjct:    1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWET 54
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BLAST of mRNA_P-littoralis_Contig174.100.1 vs. uniprot
Match: A0A433N1N0_CHLFR (Uncharacterized protein n=1 Tax=Chlorogloeopsis fritschii PCC 6912 TaxID=211165 RepID=A0A433N1N0_CHLFR)

HSP 1 Score: 77.4 bits (189), Expect = 7.450e-13
Identity = 52/160 (32.50%), Postives = 83/160 (51.88%), Query Frame = 3 
Query:  456 YPSLPQQVNDLMDYLDV--GGLILDCCGSTGDAVCRVLTERGLRVQSNDINRRLRVDTHFDTSGADFVQAYGQGDNRPDWVVTSTPYKNAFAILKQALHVATVGVVFKLRLSFLEPTKTRGQWLKDNPPALTIVL----PRAAYRG--RTCNVPEAWFMW 911
            YP+  Q  + L++ +D+  G  IL+ C   GD +  VL    + V ++DI+ +         +       Y +   R +WV+T+ P+  A AIL  A   A+VGV F LRLS+LEPTK RG W  ++   ++ ++    PR ++ G  R  +V  AW +W
Sbjct:   18 YPTPAQLTHKLLEVVDIDPGVTILEPCAGEGD-ILNVLQYYNVGVVASDISWQPHPGQTTTDATERLFWHYWKNRLRFEWVITNPPFNEASAILPLAYKHASVGVCFLLRLSYLEPTKARGDWFLEHMDNMSNLIIFGQPRPSFTGDRRVDSVTTAWMVW 176
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BLAST of mRNA_P-littoralis_Contig174.100.1 vs. uniprot
Match: A0A6H5JGM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.780e-12
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  223 QHIGEGEFWAPLAEWVATAAGTWTHQQDLLEEPLQPNECICSRVDCVSGLYNKF 384
            QH+ + E+WA L EW AT    WTH++DL+ +PL+  ECIC R DCV  LY ++
Sbjct:   44 QHVVDSEYWAELGEWSATVGEGWTHERDLVGDPLKAGECICRRADCVVNLYQRY 97
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BLAST of mRNA_P-littoralis_Contig174.100.1 vs. uniprot
Match: A0A2W4YX34_9CYAN (Uncharacterized protein n=1 Tax=Phormidesmis priestleyi TaxID=268141 RepID=A0A2W4YX34_9CYAN)

HSP 1 Score: 63.5 bits (153), Expect = 4.860e-8
Identity = 52/187 (27.81%), Postives = 81/187 (43.32%), Query Frame = 3 
Query:  408 GSSSLMETGQRGLLGRYPSLPQQVN-DLMDYLDVGGLILDCCGSTG---------DAVCRVLTERGLRVQSNDINRRLRVDTHFDTSGADFVQAYGQGDNRPDWVVTSTPYKNAFAILKQALHVATVGVVFKLRLSFLEPTKTRGQWLKDNPPALTIVL---PRAAYRG---RTCNVPEAWFMWYTG 920
            G S  + +    ++G Y   P+ V   L++ + + G + +CC   G         D+  R++ +  L   S +   R   +  F  S A        G +  DW VT+ P+  A  IL  A   +  G  F LRLS+LEPT  R  WL +    L  ++   PR  +R    +T +V  AW +W  G
Sbjct:   10 GQSEAVGSRHHRMVGDYYPTPEGVTRSLLNRVPITGTVFECCAGHGAISDILELTDSTERLVLQSDLSWPSPNGELRDATEQRFWESWATLEA----GGSPIDWTVTNPPFCEAEQILPLAWEYSRQGCAFLLRLSYLEPTAGRADWLNEMADHLRYLITLNPRPKFRRDTKKTDSVTAAWLVWEKG 192
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BLAST of mRNA_P-littoralis_Contig174.100.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.170e-6
Identity = 50/160 (31.25%), Postives = 67/160 (41.88%), Query Frame = 3 
Query:  375 QQVRKPRAAAAGSSSL-METGQRGLLGRYPSLPQQVNDLMDYLDVGGLILDCCGSTGDAVCRVLTERGLRVQSNDINRRLRVDTHFDTSGADFVQAYGQGD--NRPDWVVTSTPYKNAFAILKQALHVATVGVVFKLRLSFLEPTKTR------GQWLKD 827
            +QVR+   A  G+  L +    R  L RY + P  V+ L   + + G +LD CG   DAV +                     T+ D S   F   + + +   +PDWVVTS PYK +   +  AL VAT GV  KL L    P  T       G W  D
Sbjct:   20 RQVRRRATAGPGAPLLNLSRTTRRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGG---------------TCTNLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNPVPTGEVGEFWGVWYTD 164
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE7.690e-4852.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJU4_ECTSI2.800e-2239.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6T5_9PHAE1.310e-1461.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A433N1N0_CHLFR7.450e-1332.50Uncharacterized protein n=1 Tax=Chlorogloeopsis fr... [more]
A0A6H5JGM7_9PHAE1.780e-1250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2W4YX34_9CYAN4.860e-827.81Uncharacterized protein n=1 Tax=Phormidesmis pries... [more]
A0A6H5L1N5_9PHAE1.170e-631.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:400827..403241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog211165.AJLN01000060_gene3855
Preferred nameksgA
PFAMsCTP_transf_like,Glyco_trans_1_4,Glycos_transf_2,Methyltransf_11,Methyltransf_12,Methyltransf_23,RrnaAD
Model size1190
Max annot lvl2|Bacteria
KEGG rclassRC00003,RC03257
KEGG koko:K02528,ko:K20444
KEGG TC4.D.1.3
KEGG ReactionR10716
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Exons3
Evalue4.66e-15
EggNOG OGsCOG0030@1|root,COG0030@2|Bacteria
EC2.1.1.182
DescriptionrRNA (adenine-N6,N6-)-dimethyltransferase activity
Cds size546
COG categoryJ
CAZyGT2,GT4
BRITEko00000,ko01000,ko01005,ko02000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789840.5538447-UTR-P-littoralis_Contig174:400826..4012481680789840.5538447-UTR-P-littoralis_Contig174:400826..401248Pylaiella littoralis U1_48UTRP-littoralis_Contig174 400827..401248 +
1680789840.5968578-UTR-P-littoralis_Contig174:403019..4032411680789840.5968578-UTR-P-littoralis_Contig174:403019..403241Pylaiella littoralis U1_48UTRP-littoralis_Contig174 403020..403241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789840.5651302-CDS-P-littoralis_Contig174:401248..4013021680789840.5651302-CDS-P-littoralis_Contig174:401248..401302Pylaiella littoralis U1_48CDSP-littoralis_Contig174 401249..401302 +
1680789840.5741456-CDS-P-littoralis_Contig174:401844..4019751680789840.5741456-CDS-P-littoralis_Contig174:401844..401975Pylaiella littoralis U1_48CDSP-littoralis_Contig174 401845..401975 +
1680789840.582274-CDS-P-littoralis_Contig174:402658..4030191680789840.582274-CDS-P-littoralis_Contig174:402658..403019Pylaiella littoralis U1_48CDSP-littoralis_Contig174 402659..403019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.100.1prot_P-littoralis_Contig174.100.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 401249..403019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.100.1

>prot_P-littoralis_Contig174.100.1 ID=prot_P-littoralis_Contig174.100.1|Name=mRNA_P-littoralis_Contig174.100.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=182bp
METGQRGLLGRYPSLPQQVNDLMDYLDVGGLILDCCGSTGDAVCRVLTER
GLRVQSNDINRRLRVDTHFDTSGADFVQAYGQGDNRPDWVVTSTPYKNAF
AILKQALHVATVGVVFKLRLSFLEPTKTRGQWLKDNPPALTIVLPRAAYR
GRTCNVPEAWFMWYTGEEAHGPIAQQVVFAV*
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mRNA from alignment at P-littoralis_Contig174:400827..403241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.100.1 ID=mRNA_P-littoralis_Contig174.100.1|Name=mRNA_P-littoralis_Contig174.100.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2415bp|location=Sequence derived from alignment at P-littoralis_Contig174:400827..403241+ (Pylaiella littoralis U1_48)
AGTGCAGGAACTCCGCATTCCTCACTCGGTCCTGCCTGGTGTTCTATGCA
ACAACTCAACTGGTTTTGCTGGACAACCAACGTCCACGACTATGAGCGTG
AGAAGTAGGCGAGGTGCGTGCGGAAGCTCCGATCACGGCCTCCCCAGCGA
AGACGGGACTGCACACTTATGCTGCGCCTGCAGGCGCCCTGGCCCCACCG
ACAACCCAAGTAGGCAACGTTGCAACACATTGGAGAGGGAGAATTTTGGG
CCCCTCTTGCAGAATGGGTAGCTACGGCGGCCGGCACCTGGACCCACCAG
CAAGACTTGCTGGAAGAGCCTCTTCAGCCGAACGAGTGCATATGCTCGCG
GGTTGATTGTGTTAGCGGGCTGTACAACAAGTTCGGAAGCCACGTGCTGC
GGCGGCCGGGAGCTCGTCGTTGATGGAGACCGGGCAAAGGGGCCTTCTTG
GACGGTATCCGTCGCTTCCTCAGCAGGTGATCACCAGCCTGACTGGTGTG
CATGGTTGGTAAGCGTGGCCGTGTAGACTGCTGTAGAAAAAGTGTGACAT
GGGAGACTGCTGTAAGCTGATGTAGACTTAGGGTTAGGGGAATGGAGTCC
ATGTAGGGCGCTGTATACTGCTGTAGGGAAGTGGGCAACCAAGAATGTTC
CTGCCGGCGGCTGTAGGGAATCTAGTGACCATAATGACTGCTGTACGACG
GCGGAGAGCCTGTATTTCGATATTTCCTTCCAGACGGTCGGCGCCTGAGG
GTCATGTTGGTCCTTCTCTATGTGATATGTGCTGGTGATGACGCGTAACA
CTGAAATTAATACATTCGTCGGGAAAAAAGCAGCCTCGTCGGTGTATACG
AATGTACACAAATTGTTTTTTTTGCACTCATCTTCATTTTAATCGTGGAT
AACGCGAGAGCCCAAGCAAGCCGATGGGGCTGCTCGAAGGTGTATGTGTG
TGCAACCTGGCGTTCTAACACTCACGGGTTTGTTCTGTTGAAACGAATGT
CGGCATGCCTTGGGACAGGTGAACGACCTGATGGACTACTTGGACGTAGG
TGGCCTTATTCTTGACTGCTGCGGGAGCACGGGAGATGCTGTGTGTCGGG
TGCTGACAGAAAGAGGGCTTCGCGTTCAGTCGAACGACATCAACCGCAGG
CAAGCCAGACAGACAAGTGCATATACACCGGTCGCCCCAGTGGACTAGTG
GTCTCCTCGTTAACCACTAGATGCAGAGGAACGGGGGTTCGATTCCCGGC
GAATGTGTTTGCTTCTTTGAAAGCGGCTATGCTGTTAGTAAAAAGCAGAT
TCGGCTTCGCCGACGAGGGTAGGGACCGCGGACCCCTGCTCGCGAGAAAA
AATCTCACGCATGTACCGCAGAAGGAAGGTGGGGGTAACTCCTCCTGCGT
GACCCCGTCGATGGGCCTAGCCTGTAGTTTGAACCGCAGGGTGCAGACTA
GCGTGCCAGAGAATATGGGATGACAACACCCATATGCAAACCATTTTTCA
ATTGCCGCTCTGTCGTACACGTGCTACACGCATACTGATGTGATGAATAG
CAAGGGCGGGATAACAATGAAAGGGCGAAAAACATATTTTGCCTCCTGAC
GAATTCGGCGCCGTCTCCCCAACGCAGGCGACTAGTGTTTTTCGTTGGGC
TACCAAAAATGCCCTGATGTTTGAGCCGACACATGTCCGAAGTAAGCTGT
GCAGGTCATCGCCTGCGGTTGAAGGGTAGTGATCTGGTGTACACAAAAGC
AAATTCTCCGCAGGCTCACAAATATTCGCATACACGACGATGTCCCTTAC
GCGTGCATGCCTGTTTTGTTCCCGCACGACAGACTGCGAGTGGACACACA
CTTCGATACCTCGGGCGCAGATTTCGTTCAGGCGTACGGGCAGGGAGATA
ATCGCCCCGACTGGGTCGTGACGAGCACTCCATACAAAAACGCGTTCGCC
ATCCTGAAGCAGGCACTGCACGTAGCGACAGTCGGTGTCGTCTTTAAGCT
CAGGCTGTCGTTCCTCGAGCCTACGAAGACTCGCGGACAGTGGTTAAAGG
ACAACCCACCTGCTCTCACGATAGTTCTGCCCCGCGCAGCTTACCGGGGT
AGAACATGCAATGTCCCGGAGGCATGGTTCATGTGGTACACTGGTGAAGA
GGCTCATGGTCCCATTGCACAGCAGGTTGTGTTTGCCGTCTGAGCCGTTC
TCACGTTTAATCTGTTACTTGAGGCACCGACGAACGCGTGTGACGAACGG
CCTTTCTTTGGTAGGATTGTACTCGCGTCGTAAAGGTTAGGCTGCAGCCT
TCCCCTGTTTAATCTCCCCCACCGTGTATGTGGGTACGCACAAATGTCAG
GGAGGCCGTAAAGTATGCGGGCACGTTTTTGTAAGGGCGATACCTTGACT
CTTGGAGTAGCAAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:400827..403241+

>mRNA_P-littoralis_Contig174.100.1 ID=mRNA_P-littoralis_Contig174.100.1|Name=mRNA_P-littoralis_Contig174.100.1|organism=Pylaiella littoralis U1_48|type=CDS|length=546bp|location=Sequence derived from alignment at P-littoralis_Contig174:400827..403241+ (Pylaiella littoralis U1_48)
ATGGAGACCGGGCAAAGGGGCCTTCTTGGACGGTATCCGTCGCTTCCTCA
GCAGGTGAACGACCTGATGGACTACTTGGACGTAGGTGGCCTTATTCTTG
ACTGCTGCGGGAGCACGGGAGATGCTGTGTGTCGGGTGCTGACAGAAAGA
GGGCTTCGCGTTCAGTCGAACGACATCAACCGCAGACTGCGAGTGGACAC
ACACTTCGATACCTCGGGCGCAGATTTCGTTCAGGCGTACGGGCAGGGAG
ATAATCGCCCCGACTGGGTCGTGACGAGCACTCCATACAAAAACGCGTTC
GCCATCCTGAAGCAGGCACTGCACGTAGCGACAGTCGGTGTCGTCTTTAA
GCTCAGGCTGTCGTTCCTCGAGCCTACGAAGACTCGCGGACAGTGGTTAA
AGGACAACCCACCTGCTCTCACGATAGTTCTGCCCCGCGCAGCTTACCGG
GGTAGAACATGCAATGTCCCGGAGGCATGGTTCATGTGGTACACTGGTGA
AGAGGCTCATGGTCCCATTGCACAGCAGGTTGTGTTTGCCGTCTGA
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