mRNA_P-littoralis_Contig174.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.1.1
Unique NamemRNA_P-littoralis_Contig174.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:1472..2049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size580
Hectar predicted targeting categoryother localisation
Exons1
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789835.7830555-CDS-P-littoralis_Contig174:1471..19931680789835.7830555-CDS-P-littoralis_Contig174:1471..1993Pylaiella littoralis U1_48CDSP-littoralis_Contig174 1472..1993 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789835.7928545-UTR-P-littoralis_Contig174:1993..20491680789835.7928545-UTR-P-littoralis_Contig174:1993..2049Pylaiella littoralis U1_48UTRP-littoralis_Contig174 1994..2049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.1.1prot_P-littoralis_Contig174.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 1472..1993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.1.1

>prot_P-littoralis_Contig174.1.1 ID=prot_P-littoralis_Contig174.1.1|Name=mRNA_P-littoralis_Contig174.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=174bp
MSLPGQGEGENRQGTPPQPAADGSSGHHETPVGALSLSPGDLAGIASIVD
QVMRNAPAPAAAQDRGQPHQSGSSRIEIRQKADVRPWTGNFSKGESVEIA
LRVFKGSVFAWLNSEGLDGFMDSQMEIPEGVENINMQQLRLGYGSDNVTK
SLKVWNMLIQKICRQPIQQQVLAC
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mRNA from alignment at P-littoralis_Contig174:1472..2049-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.1.1 ID=mRNA_P-littoralis_Contig174.1.1|Name=mRNA_P-littoralis_Contig174.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=578bp|location=Sequence derived from alignment at P-littoralis_Contig174:1472..2049- (Pylaiella littoralis U1_48)
TAACACGCTAGCGAGTTCGAACGACGGTGGACTTCTGTGTGAGCGGCCGC
TAGGCCATGTCTCTGCCGGGACAAGGAGAAGGAGAGAACAGACAAGGAAC
ACCACCACAACCAGCAGCTGACGGCAGCAGCGGGCATCATGAGACCCCGG
TCGGCGCGCTCTCGTTATCGCCAGGCGACCTGGCCGGGATTGCCTCGATT
GTCGACCAAGTTATGCGGAACGCACCCGCCCCGGCAGCTGCCCAGGACCG
AGGGCAGCCCCACCAGTCAGGTTCTTCTAGGATTGAGATTAGGCAGAAAG
CTGATGTTCGGCCTTGGACGGGGAATTTTTCGAAGGGAGAGAGTGTTGAG
ATTGCCCTGCGTGTGTTCAAGGGTTCGGTTTTCGCTTGGCTGAATTCTGA
AGGGCTTGATGGATTTATGGATAGCCAGATGGAGATTCCTGAAGGAGTGG
AGAACATCAACATGCAGCAACTCAGACTTGGCTATGGTAGTGATAACGTC
ACAAAATCCCTCAAAGTGTGGAACATGCTCATCCAGAAAATCTGCCGCCA
GCCTATCCAGCAACAGGTACTCGCGTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:1472..2049-

>mRNA_P-littoralis_Contig174.1.1 ID=mRNA_P-littoralis_Contig174.1.1|Name=mRNA_P-littoralis_Contig174.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=522bp|location=Sequence derived from alignment at P-littoralis_Contig174:1472..2049- (Pylaiella littoralis U1_48)
ATGTCTCTGCCGGGACAAGGAGAAGGAGAGAACAGACAAGGAACACCACC
ACAACCAGCAGCTGACGGCAGCAGCGGGCATCATGAGACCCCGGTCGGCG
CGCTCTCGTTATCGCCAGGCGACCTGGCCGGGATTGCCTCGATTGTCGAC
CAAGTTATGCGGAACGCACCCGCCCCGGCAGCTGCCCAGGACCGAGGGCA
GCCCCACCAGTCAGGTTCTTCTAGGATTGAGATTAGGCAGAAAGCTGATG
TTCGGCCTTGGACGGGGAATTTTTCGAAGGGAGAGAGTGTTGAGATTGCC
CTGCGTGTGTTCAAGGGTTCGGTTTTCGCTTGGCTGAATTCTGAAGGGCT
TGATGGATTTATGGATAGCCAGATGGAGATTCCTGAAGGAGTGGAGAACA
TCAACATGCAGCAACTCAGACTTGGCTATGGTAGTGATAACGTCACAAAA
TCCCTCAAAGTGTGGAACATGCTCATCCAGAAAATCTGCCGCCAGCCTAT
CCAGCAACAGGTACTCGCGTGT
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