mRNA_P-littoralis_Contig173.84.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig173.84.1
Unique NamemRNA_P-littoralis_Contig173.84.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig173.84.1 vs. uniprot
Match: A0A6H5JIS8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS8_9PHAE)

HSP 1 Score: 378 bits (970), Expect = 8.000e-120
Identity = 187/309 (60.52%), Postives = 235/309 (76.05%), Query Frame = 1 
Query:    4 ATPDDVFNWLCFLDSQGNGTKIVHHRSCPGVGSPATANCSVASPCPKRYAAESLRKGFWSKLKMAYREQLARGDPWNPENRSGNPCDAPLVESHLLCAAEEQKMGGVAVKQAEPMLAHALETLLASMRTRAQLSLSIQERISITRDIALFALAFYTMRRGFDLSFTLASQVLKLPNSEGFIF*FHFGKTLRTSTDSVVVRADADNHQTCAFRAVNAYVAAATRIGWDLALGHLFPLVEENGRRGSAPITAPRMTASLQSHLRDANLPAHFTMHSFRVGGSLSESLAGTAVDEIMKLGGWKTASMAEHYI 930
            A+PDDV +W  +LDSQG GTK+VH  +C GVGS    +CS  + C KRY AESLRKGF+SKLKMAY+EQL RGD WNP   SGNPC +P V+++L    EEQK  GV  KQA P+L   L  LL  MR RA  S S+ ERI+ITRD+ALF+LA ++MRRGFDLSFTL SQVL+LP S GFIF F FGKTLR ST+++VV A   N   CA RAV  Y+ AA ++GWDL+ G+LFP V ++G RG++ + A +MT+SLQ+HLR A+LPAHF+MHSFRVGGSLS S+ G+A++EIM++GGWKT SMA++Y+
Sbjct:  716 ASPDDVVDWFSYLDSQGKGTKLVHDATCAGVGSSDRRSCSPGATCKKRYGAESLRKGFYSKLKMAYKEQLGRGDDWNPTVGSGNPCASPTVDAYLTFTTEEQKRVGVTAKQAAPLLEDTLGELLPHMRLRALASDSMAERIAITRDVALFSLAHHSMRRGFDLSFTLGSQVLRLPESRGFIFNFLFGKTLRASTEAIVVLAST-NRDVCAVRAVAEYILAAQQVGWDLSSGYLFPSVLDDGSRGNSKLVATQMTSSLQAHLRAASLPAHFSMHSFRVGGSLSRSMGGSAIEEIMQIGGWKTESMAKYYV 1023
[Close]
BLAST of mRNA_P-littoralis_Contig173.84.1 vs. uniprot
Match: A0A6H5KRN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN9_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 5.440e-82
Identity = 142/244 (58.20%), Postives = 174/244 (71.31%), Query Frame = 1 
Query:    1 AATPDDVFNWLCFLDSQGNGTKIVHHRSCPGVGSPATANCSVASPCPKRYAAESLRKGFWSKLKMAYREQLARGDPWNPENRSGNPCDAPLVESHLLCAAEEQKMGGVAVKQAEPMLAHALETLLASMRTRAQLSLSIQERISITRDIALFALAFYTMRRGFDLSFTLASQVLKLPNSEGFIF*FHFGKTLRTSTDSVVVRADADNHQTCAFRAVNAYVAAATRIGWDLALGHLFPLVEENGRR 732
            AA+  DVF++LCFLD+QG+GTK VH R+CPGVG+    +C   S C KRYAA S++KG  SKLKMA +EQL +   W+P  RSGNPC +PLV+S+L+   EEQK  GVAV QAE ML H L  LL  MR+RAQ + S+ ERI +TRD+ALF+LAF  MRRG DLSFT+ SQVL+LP  +G IF F FGKTLR S D+VVV  D      CA   V  Y++AA RIGWDL+ GHLFP+V  +G R
Sbjct:  714 AASDRDVFDYLCFLDTQGSGTKWVHDRACPGVGATHGRDCLPNSTCAKRYAAASMQKGIVSKLKMAMQEQLGKERSWDPATRSGNPCSSPLVDSYLVFTGEEQKRVGVAVNQAEAMLPHVLIDLLRDMRSRAQTASSLAERIELTRDVALFSLAFAPMRRGHDLSFTMGSQVLQLPAGQGLIFNFQFGKTLRDSVDAVVVSPDVACPSICAVSNVTGYISAAERIGWDLSQGHLFPVVLLDGTR 957
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig173.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIS8_9PHAE8.000e-12060.52Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRN9_9PHAE5.440e-8258.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig173contigP-littoralis_Contig173:466628..467557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size930
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789835.0756805-UTR-P-littoralis_Contig173:466627..4670051680789835.0756805-UTR-P-littoralis_Contig173:466627..467005Pylaiella littoralis U1_48UTRP-littoralis_Contig173 466628..467005 -
1680789835.096638-UTR-P-littoralis_Contig173:467365..4675571680789835.096638-UTR-P-littoralis_Contig173:467365..467557Pylaiella littoralis U1_48UTRP-littoralis_Contig173 467366..467557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789835.0858319-CDS-P-littoralis_Contig173:467005..4673651680789835.0858319-CDS-P-littoralis_Contig173:467005..467365Pylaiella littoralis U1_48CDSP-littoralis_Contig173 467006..467365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig173.84.1prot_P-littoralis_Contig173.84.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig173 467006..467365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig173.84.1

>prot_P-littoralis_Contig173.84.1 ID=prot_P-littoralis_Contig173.84.1|Name=mRNA_P-littoralis_Contig173.84.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MAYREQLARGDPWNPENRSGNPCDAPLVESHLLCAAEEQKMGGVAVKQAE
PMLAHALETLLASMRTRAQLSLSIQERISITRDIALFALAFYTMRRGFDL
SFTLASQVLKLPNSEGFIF*
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mRNA from alignment at P-littoralis_Contig173:466628..467557-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig173.84.1 ID=mRNA_P-littoralis_Contig173.84.1|Name=mRNA_P-littoralis_Contig173.84.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=930bp|location=Sequence derived from alignment at P-littoralis_Contig173:466628..467557- (Pylaiella littoralis U1_48)
GCGGCCACTCCCGACGACGTCTTCAACTGGCTATGCTTCCTCGACTCGCA
AGGTAACGGCACTAAGATCGTACACCACCGGTCGTGTCCGGGAGTTGGTT
CTCCTGCAACAGCCAACTGCTCTGTTGCATCACCGTGCCCAAAACGGTAC
GCCGCCGAATCACTCAGGAAAGGTTTCTGGTCAAAACTCAAGATGGCTTA
CCGCGAACAACTCGCTCGCGGCGACCCGTGGAACCCCGAGAACAGGTCTG
GCAACCCCTGTGACGCCCCGCTCGTCGAGTCCCACCTTCTCTGCGCGGCA
GAAGAGCAGAAAATGGGGGGGGTCGCCGTCAAACAAGCGGAGCCCATGCT
GGCGCACGCTCTCGAGACCTTGTTGGCAAGCATGCGCACGCGTGCTCAAC
TTTCGCTTTCCATTCAGGAGCGTATCTCCATCACCAGAGACATCGCTCTT
TTCGCGTTGGCGTTCTACACTATGCGCCGGGGATTCGACCTTTCGTTCAC
CCTTGCGTCGCAAGTCCTGAAGTTGCCGAACTCCGAAGGCTTTATCTTCT
AATTCCACTTCGGAAAAACGCTTCGTACTTCTACGGATTCGGTGGTGGTC
CGTGCCGACGCAGACAACCACCAGACATGCGCTTTTCGAGCGGTGAACGC
ATACGTCGCCGCCGCAACAAGGATTGGATGGGATTTGGCCTTAGGGCATC
TATTTCCCCTTGTCGAAGAAAATGGGCGTCGCGGCAGCGCCCCCATAACC
GCCCCCCGCATGACGGCGTCGCTACAATCGCATCTGCGCGATGCGAACCT
CCCGGCCCACTTCACCATGCACTCATTTCGAGTCGGGGGCTCTCTCAGTG
AGTCCCTCGCAGGTACCGCCGTCGACGAAATCATGAAGCTTGGTGGTTGG
AAAACCGCCTCTATGGCGGAGCACTACATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig173:466628..467557-

>mRNA_P-littoralis_Contig173.84.1 ID=mRNA_P-littoralis_Contig173.84.1|Name=mRNA_P-littoralis_Contig173.84.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig173:466628..467557- (Pylaiella littoralis U1_48)
ATGGCTTACCGCGAACAACTCGCTCGCGGCGACCCGTGGAACCCCGAGAA
CAGGTCTGGCAACCCCTGTGACGCCCCGCTCGTCGAGTCCCACCTTCTCT
GCGCGGCAGAAGAGCAGAAAATGGGGGGGGTCGCCGTCAAACAAGCGGAG
CCCATGCTGGCGCACGCTCTCGAGACCTTGTTGGCAAGCATGCGCACGCG
TGCTCAACTTTCGCTTTCCATTCAGGAGCGTATCTCCATCACCAGAGACA
TCGCTCTTTTCGCGTTGGCGTTCTACACTATGCGCCGGGGATTCGACCTT
TCGTTCACCCTTGCGTCGCAAGTCCTGAAGTTGCCGAACTCCGAAGGCTT
TATCTTCTAA
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