mRNA_P-littoralis_Contig173.83.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig173.83.1
Unique NamemRNA_P-littoralis_Contig173.83.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig173.83.1 vs. uniprot
Match: UPI000A2A66BF (protein ALP1-like isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A66BF)

HSP 1 Score: 209 bits (532), Expect = 9.440e-61
Identity = 116/256 (45.31%), Postives = 153/256 (59.77%), Query Frame = 1
Query:   16 YPGRWQDLQREFGREYTQLSRIFNEVVDWAYDNHLHRVTDCLEFFAPRFPQMCKKIEAKGGMVCEGGNFIGFIDGTVRRNTRPGGDPAVQEQLYDGPHCAHGLAWQSVVFAHGMM-EIWGPETGRRHDSLLLSRSGLNGRLAALQEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 780
            YP RW DLQ  FGR  ++LS IFNEV+D  Y++H H + D L+          + I AKG  + +     GFIDGT R   RP      Q  +Y G    H L +QSV   +G++  ++GP  GRRHD+ +L  SGL  +L  LQ  N   Y +YGD AY +  ++   FRG  LT  Q+ +N+ +SK+RVAVEW FGK+ Q F F+DF KN+K+ LQ V KYY +A LLTN HTC+  S TG YF++  PSLE Y
Sbjct:  146 YPNRWCDLQSLFGRSESELSLIFNEVIDDIYESH-HHLIDALDLVWLDPQTFSQAIHAKGAPLDQ---CWGFIDGTPRPIARP---IRSQRIMYSGHKRVHCLKFQSVQAPNGLIAHLFGPIEGRRHDAFMLGESGLADKLRPLQRPNGEPYVIYGDPAYGLTRNILAPFRGAQLTHDQQEFNRRMSKLRVAVEWGFGKICQQFAFLDFKKNMKVLLQPVGKYYVVAALLTNCHTCLYNSQTGRYFELYPPSLEDY 394          
BLAST of mRNA_P-littoralis_Contig173.83.1 vs. uniprot
Match: UPI00106D38F2 (uncharacterized protein LOC114539259 n=4 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D38F2)

HSP 1 Score: 197 bits (500), Expect = 1.910e-56
Identity = 113/262 (43.13%), Postives = 152/262 (58.02%), Query Frame = 1
Query:   16 YPGRWQDLQREFGREYTQLSRIFNEVVDWAYDNHLHRVTDCLEF-FAP-RFPQMCKKIEAKGGMVCEGGNFIGFIDGTVRRNTRPGGDPAVQEQLYDGPHCAHGLAWQSVVFAHGMM-EIWGPETGRRHDSLLLSRSGLNGRLAAL---QEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAYF 783
            YP R+ D+   FGR   +LS I N VVD+ YD+H HRV+   E  F+P         I  KG  +    N +GFIDGTVR   RPG    +Q  +Y+G    H + +QSV   +GM+  ++GP  GRRHDS +L++SGL  +L      +EG      +YGD AYP+  H+   FR   LT   K +NK +SKVR+AVEW FG +V  F F+DF KNLKI L  V K Y +  +L NA TC+ G+ T  YF ++ P+L+ YF
Sbjct:  104 YPCRYSDMIPLFGRAVPELSMITNVVVDYIYDHHGHRVSHWNEMLFSPDNLKDYASSIFLKGAAL---NNCVGFIDGTVRAICRPG---KLQRAVYNGHKRVHAIKFQSVALPNGMIGHLYGPMEGRRHDSFMLAQSGLLNQLQTFCFTEEGQPLC--LYGDPAYPLRVHLQAPFRNAVLTQPMKEFNKSMSKVRIAVEWLFGDIVNYFKFMDFKKNLKIGLSCVGKMYIVCAILRNALTCLYGNQTSEYFGLSPPTLQEYF 357          
BLAST of mRNA_P-littoralis_Contig173.83.1 vs. uniprot
Match: UPI00077A71E6 (uncharacterized protein LOC107340903 n=3 Tax=Acropora TaxID=6127 RepID=UPI00077A71E6)

HSP 1 Score: 195 bits (496), Expect = 1.710e-55
Identity = 109/259 (42.08%), Postives = 154/259 (59.46%), Query Frame = 1
Query:   16 YPGRWQDLQREFGREYTQLSRIFNEVVDWAYD--NHLHRVTDCLEFFAPRFPQMCKKIEAKGGMVCEGGNFIGFIDGTVRRNTRPGGDPAVQEQLYDGPHCAHGLAWQSVVFAHGMM-EIWGPETGRRHDSLLLSRSGLNGRLAA-LQEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 780
            YP RW +L + FGR   +LS IFNE++   Y+  +HL    D +   A  F    + I  KG  + +     GF+DGT R  TRP  +   Q  ++ G    H L +QSVV  +GM+  ++GP  GRRHD+ +L+ SGL  +L   L + N   Y +YGD AYP+  H+   FRG  LT  ++ +NK++S VR++VEW +GK+V+ F F+DF KNLK+ LQ V K Y +  +L N HTC+ GS TG +FD+  PSLE Y
Sbjct:  139 YPNRWCELTKLFGRAEPELSMIFNEILSDVYNRFSHLLESLDLIWLDADAFS---RAIYGKGAPLRD---CWGFVDGTARPTTRPVRN---QRIMFSGHKRVHCLKFQSVVSPNGMICHLFGPVEGRRHDAFMLAESGLLPKLERRLNKPNGEPYVIYGDPAYPVRRHILAPFRGARLTPDEERFNKDMSTVRISVEWGYGKIVRYFAFLDFNKNLKVLLQPVGKMYVVGAILANCHTCLYGSQTGDFFDLDPPSLETY 388          
BLAST of mRNA_P-littoralis_Contig173.83.1 vs. uniprot
Match: UPI00077A7035 (uncharacterized protein LOC107333236 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A7035)

HSP 1 Score: 190 bits (482), Expect = 1.860e-54
Identity = 105/256 (41.02%), Postives = 151/256 (58.98%), Query Frame = 1
Query:   16 YPGRWQDLQREFGREYTQLSRIFNEVVDWAYDNHLHRVTDCLEFFAPRFPQMCKKIEAKGGMVCEGGNFIGFIDGTVRRNTRPGGDPAVQEQLYDGPHCAHGLAWQSVVFAHGMM-EIWGPETGRRHDSLLLSRSGLNGRLAALQEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 780
            YP RW DL+  FGR  ++LS IF+EV+D  +D     + D L+          + I  KG  + +     GFIDGT R   RP  +   Q+ +Y G    H + +QSV   +G++  ++GP  G+RHD+ +L  SGL  +L   Q  N   Y +YGD AY +  ++   +RG  LTD Q+ +N ++SK+R  VEW FGK+ Q+F F+DF KNLK+ LQ + KYY +AV+L N HTC+ GS TG YF++  P+LE Y
Sbjct:   50 YPSRWCDLEAIFGRSESELSLIFHEVLDDIHDR-FSDLLDSLDLIWLDPGLFSQVIHWKGAPLTQ---CWGFIDGTPRPIARPTRN---QQIMYSGHKRTHCIKFQSVQAPNGLIAHMFGPIEGKRHDAFMLGVSGLADKLRRFQRPNGEPYVIYGDPAYGLSRNILAPYRGVRLTDDQQEFNSQMSKMRCCVEWGFGKISQLFAFLDFKKNLKVLLQPIGKYYLVAVILINCHTCLYGSQTGAYFNLDPPTLETY 298          
BLAST of mRNA_P-littoralis_Contig173.83.1 vs. uniprot
Match: UPI00077AC7F2 (uncharacterized protein LOC107350804 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AC7F2)

HSP 1 Score: 191 bits (485), Expect = 4.160e-54
Identity = 113/263 (42.97%), Postives = 153/263 (58.17%), Query Frame = 1
Query:    1 LLQRRYPGRWQDLQREFGREYTQLSRIFNEVVDWAYD--NHLHRVTDCLEFFAPRFPQMCKKIEAKGGMVCEGGNFIGFIDGTVRRNTRPGGDPAVQEQLYDGPHCAHGLAWQSVVFAHGMM-EIWGPETGRRHDSLLLSRSGLNGRLAALQEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 780
            LL+  YP RW DL   FGR+  QLS IFN+V+D  Y+  NHL    D +      F Q    +EAKG  + +     GFIDGT R   RP  +   Q  ++ G    H L +QSV   +G++  ++GP  GRRHD+ +L  SGL  +L  LQ      Y +YGD AY +  ++   FRG  LT+ ++ +N ++SKVR  VEW FGK+ Q F F+DF KNL++ LQ V KYY +A +L N HTC+ GS T  YF++  PSLE Y
Sbjct:  113 LLRLVYPSRWCDLAPVFGRDEPQLSLIFNKVMDDIYERFNHLLTSLDLVWLDPEMFSQA---VEAKGAPLHQ---CWGFIDGTPRPIARPIRN---QRIMFSGHKRTHCLKFQSVQAPNGIIAHMFGPIEGRRHDAFMLGISGLADKLERLQTPTGEPYVIYGDPAYGLTRNILAPFRGVQLTNDEQLFNTQMSKVRTCVEWGFGKICQNFAFLDFKKNLRVLLQPVGKYYLVASILVNCHTCLYGSQTSTYFNLEPPSLERY 366          
BLAST of mRNA_P-littoralis_Contig173.83.1 vs. uniprot
Match: A0A6J8AX30_MYTCO (DDE Tnp4 domain-containing protein n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8AX30_MYTCO)

HSP 1 Score: 190 bits (482), Expect = 6.190e-54
Identity = 110/266 (41.35%), Postives = 152/266 (57.14%), Query Frame = 1
Query:    1 LLQRR--YPGRWQDLQREFGREYTQLSRIFNEVVDWAYDNHLHRVTDCLEFFAPR--FPQMCKKIEAKGGMVCEGGNFIGFIDGTVRRNTRPGGDPAVQEQLYDGPHCAHGLAWQSVVFAHGMM-EIWGPETGRRHDSLLLSRSGLNGRLAALQEGNTTQ-YRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 780
            LL RR  YP R  DL+  FGR  T +S I N V+++ YD H H + D    +       +    I A+   +    N  GFI GTVR   RP      Q  L++G    H + +QS+V  +G++  ++GP  GRRHD+ LL  SG+ G L       T   Y +YGD AYP+ +H+ + FRG  ++ AQ  +NK++S VR  VEW FGK++ +F F+D+ KNLK+ LQ V KYY +  +L N HTC+ GS TG YFD+  PSLE Y
Sbjct:   84 LLLRRLTYPSRLSDLKSVFGRSVTAMSIIINTVLNFVYDAHNHLLHDLNSNWLSHRHLQEYADAIAARDAPLL---NCWGFIYGTVRPLCRP---TTNQRILFNGHKRVHAIKFQSIVAPNGLVANMYGPIEGRRHDAGLLRESGICGELQTHMTTPTGDIYVIYGDPAYPMTTHIIKTFRGGVISAAQARFNKKISAVRTCVEWTFGKILTLFAFLDYKKNLKLYLQPVGKYYLVGTILVNCHTCLYGSETGHYFDIDPPSLENY 343          
BLAST of mRNA_P-littoralis_Contig173.83.1 vs. uniprot
Match: A0A6S7GNP4_PARCT (DDE Tnp4 domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GNP4_PARCT)

HSP 1 Score: 190 bits (483), Expect = 6.870e-54
Identity = 106/257 (41.25%), Postives = 149/257 (57.98%), Query Frame = 1
Query:   16 YPGRWQDLQREFGREYTQLSRIFNEVVDWAYDNHLHRVTDC-LEFFAPRFPQMCKKIEAKGGMVCEGGNFIGFIDGTVRRNTRPGGDPAVQEQLYDGPHCAHGLAWQSVVFAHGMM-EIWGPETGRRHDSLLLSRSGLNGRLAALQEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 780
            YP RW DL + FGR   +LS +FN V++  Y    H +T   L +  P        +  KG  + +     GFIDGT RR  RP  +   Q  +Y G    H + +QSV+  +G++  ++GP  GRRHD+ +L  SGL   L  + + N   Y VYGD AY I  H+   F+G  LT+ Q+ +N+++S+VRV VEW FGK+ Q F ++DF KNLK+ LQ VAKYYA+  LL N HTC+ GS+   +F++  P LE Y
Sbjct:  110 YPNRWCDLVKIFGRSEAELSILFNMVINDIYTRFNHLLTSLDLAWLDPAI--FADAVHCKGAPLNQ---CWGFIDGTTRRIARPVRN---QNVMYSGHKRIHCIKFQSVLAPNGLIAHLFGPIEGRRHDAFMLGVSGLLPLLERIIKPNGEPYVVYGDPAYGISRHIISPFKGAHLTEPQQQFNRDMSEVRVCVEWGFGKIAQYFAYLDFQKNLKVLLQPVAKYYAVGALLINCHTCLYGSVASSFFNLDPPLLEDY 358          
BLAST of mRNA_P-littoralis_Contig173.83.1 vs. uniprot
Match: UPI00106A72DF (uncharacterized protein LOC114526587 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A72DF)

HSP 1 Score: 186 bits (473), Expect = 9.010e-54
Identity = 108/251 (43.03%), Postives = 144/251 (57.37%), Query Frame = 1
Query:   49 FGREYTQLSRIFNEVVDWAYDNHLHRVTDCLEF-FAP-RFPQMCKKIEAKGGMVCEGGNFIGFIDGTVRRNTRPGGDPAVQEQLYDGPHCAHGLAWQSVVFAHGMM-EIWGPETGRRHDSLLLSRSGLNGRLAAL---QEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAYF 783
            FGR   +LS I N VVD+ YD+H HRV+   E  F+P         I  KG  +    N +GFIDGTVR   RPG    +Q  +Y+G    H + +QSV   +GM+  ++GP  GRRHDS +L++SGL  +L      +EG      +YGD AYP+  H+   FR   LT   K   K +SKVR+AVEW FG +V  F F+DF KNLKI L  V K Y +  +L NA TC+ G+ T  YF ++ P+L+ YF
Sbjct:    5 FGRAVPELSMITNVVVDYIYDHHGHRVSHWNEMLFSPDNLKDYASSIFLKGAAL---NNCVGFIDGTVRAICRPG---KLQRAVYNGHKRVHAIKFQSVALPNGMIGHLYGPMEGRRHDSFMLAQSGLLNQLQTFCFTEEGQPLC--LYGDPAYPLRVHLQAPFRNAVLTQPMKELYKSMSKVRIAVEWLFGDIVNYFKFMDFKKNLKIGLSCVGKMYIVCAILRNALTCLYGNQTSEYFGLSPPTLQEYF 247          
BLAST of mRNA_P-littoralis_Contig173.83.1 vs. uniprot
Match: UPI00106B81BB (uncharacterized protein LOC114518718 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B81BB)

HSP 1 Score: 186 bits (473), Expect = 1.400e-53
Identity = 105/257 (40.86%), Postives = 149/257 (57.98%), Query Frame = 1
Query:   16 YPGRWQDLQREFGREYTQLSRIFNEVVDWAYDNHLHRVTDC-LEFFAPRFPQMCKKIEAKGGMVCEGGNFIGFIDGTVRRNTRPGGDPAVQEQLYDGPHCAHGLAWQSVVFAHGMM-EIWGPETGRRHDSLLLSRSGLNGRLAALQEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 780
            YP RW DL   FGR  ++LS IFN+++D   D   + +    L +F P        I  KG  + +     GFIDGTVR   RP  +   Q+ ++ G    H + +QSV   +G++  ++GP  GRRHD+ +L  S L  +L  +++ N   Y +YGD AY +  ++   FRG  LT  ++ +NK +SK+RV+VEW FGK+ Q F F+DF KN KI LQ + KYY +  LLTN HTC+ GS+T  YF +  PSLE Y
Sbjct:   13 YPNRWCDLVSIFGRSESELSLIFNKILDDICDRFSYLLDSLDLVWFDPEL--FSNPIHNKGAPLTQ---CWGFIDGTVRPIPRPIRN---QQIMFSGHKRTHCIKFQSVHAPNGLIANMFGPVEGRRHDAFILGVSNLADKLCRIRQPNGEPYIIYGDPAYGVTDNILAPFRGVFLTADEQEFNKRMSKLRVSVEWGFGKIAQYFAFLDFKKNQKILLQPIGKYYLVGTLLTNCHTCLYGSLTSSYFGVQPPSLETY 261          
BLAST of mRNA_P-littoralis_Contig173.83.1 vs. uniprot
Match: A0A6S7FVW6_PARCT (DDE Tnp4 domain-containing protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FVW6_PARCT)

HSP 1 Score: 189 bits (479), Expect = 2.300e-53
Identity = 102/259 (39.38%), Postives = 148/259 (57.14%), Query Frame = 1
Query:   16 YPGRWQDLQREFGREYTQLSRIFNEVVDWAYDNHLHRVTDCLE-FFAPRFPQM-CKKIEAKGGMVCEGGNFIGFIDGTVRRNTRPGGDPAVQEQLYDGPHCAHGLAWQSVVFAHGMM-EIWGPETGRRHDSLLLSRSGLNGRLAALQEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAYF 783
            YP R+ D+   FGR  ++L  IFNEV+D+ Y+ H HR+    + F +P+  Q+    I  KG  +    N  GF+DGTVR+  RP      Q  + +G    H + +QSVV  +G++  + GP  G+RHDS++L  SGL   L  +   N     +YGD AYP+  H+   FR   LT A   +N+E+S+VRV+VEW FG + + F FVDF + +K+ L  V K Y +A LL NAHTC+  +I   +F +  PS+  YF
Sbjct:  104 YPCRYSDMVSRFGRNPSELCLIFNEVLDFLYERHHHRLQSWNQPFLSPQILQIYADAIHNKGAPL---DNCFGFVDGTVRQIPRP---KYHQRVMCNGHKRVHSIKFQSVVLPNGLIGNLAGPYEGKRHDSMMLQESGLLTNLQQIAFYNNNPLSIYGDPAYPLGVHLQAPFRERELTPAMAEFNREMSRVRVSVEWMFGNITKYFSFVDFKRQMKLHLSPVGKIYTVAALLQNAHTCLYENIVSHFFYLKPPSIHEYF 356          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig173.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000A2A66BF9.440e-6145.31protein ALP1-like isoform X1 n=2 Tax=Exaiptasia di... [more]
UPI00106D38F21.910e-5643.13uncharacterized protein LOC114539259 n=4 Tax=Dendr... [more]
UPI00077A71E61.710e-5542.08uncharacterized protein LOC107340903 n=3 Tax=Acrop... [more]
UPI00077A70351.860e-5441.02uncharacterized protein LOC107333236 n=1 Tax=Acrop... [more]
UPI00077AC7F24.160e-5442.97uncharacterized protein LOC107350804 n=1 Tax=Acrop... [more]
A0A6J8AX30_MYTCO6.190e-5441.35DDE Tnp4 domain-containing protein n=2 Tax=Mytilus... [more]
A0A6S7GNP4_PARCT6.870e-5441.25DDE Tnp4 domain-containing protein n=1 Tax=Paramur... [more]
UPI00106A72DF9.010e-5443.03uncharacterized protein LOC114526587 n=1 Tax=Dendr... [more]
UPI00106B81BB1.400e-5340.86uncharacterized protein LOC114518718 n=1 Tax=Dendr... [more]
A0A6S7FVW6_PARCT2.300e-5339.38DDE Tnp4 domain-containing protein n=3 Tax=Paramur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig173contigP-littoralis_Contig173:438634..440197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7668.SPU_016560-tr
PFAMsDDE_Tnp_4
Model size1069
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.91e-43
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota,3A38W@33154|Opisthokonta,3BS4I@33208|Metazoa,3D9UV@33213|Bilateria
DescriptionDDE superfamily endonuclease
Cds size624
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789835.00725-UTR-P-littoralis_Contig173:438633..4388011680789835.00725-UTR-P-littoralis_Contig173:438633..438801Pylaiella littoralis U1_48UTRP-littoralis_Contig173 438634..438801 +
1680789835.0451438-UTR-P-littoralis_Contig173:439920..4401971680789835.0451438-UTR-P-littoralis_Contig173:439920..440197Pylaiella littoralis U1_48UTRP-littoralis_Contig173 439921..440197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789835.0209382-CDS-P-littoralis_Contig173:438801..4388261680789835.0209382-CDS-P-littoralis_Contig173:438801..438826Pylaiella littoralis U1_48CDSP-littoralis_Contig173 438802..438826 +
1680789835.0336404-CDS-P-littoralis_Contig173:439321..4399201680789835.0336404-CDS-P-littoralis_Contig173:439321..439920Pylaiella littoralis U1_48CDSP-littoralis_Contig173 439322..439920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig173.83.1prot_P-littoralis_Contig173.83.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig173 438802..439920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig173.83.1

>prot_P-littoralis_Contig173.83.1 ID=prot_P-littoralis_Contig173.83.1|Name=mRNA_P-littoralis_Contig173.83.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=208bp
MCKKIEAKGGMVCEGGNFIGFIDGTVRRNTRPGGDPAVQEQLYDGPHCAH
GLAWQSVVFAHGMMEIWGPETGRRHDSLLLSRSGLNGRLAALQEGNTTQY
RVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQ
IFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPS
LEAYFAF*
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mRNA from alignment at P-littoralis_Contig173:438634..440197+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig173.83.1 ID=mRNA_P-littoralis_Contig173.83.1|Name=mRNA_P-littoralis_Contig173.83.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1564bp|location=Sequence derived from alignment at P-littoralis_Contig173:438634..440197+ (Pylaiella littoralis U1_48)
TTGCTCCAACGCAGGTATCCTGGACGCTGGCAGGACCTACAAAGGGAGTT CGGCCGAGAGTACACCCAGTTGAGTCGAATTTTCAACGAGGTGGTCGACT GGGCGTACGACAACCACCTGCACAGGGTGACTGACTGCCTGGAGTTCTTC GCTCCACGCTTCCCTCAGATGTGCAAGAAGATAGAAGCGAAAGGTGACCA TTTTAACGGCGTCGTACTCGGTGTTCTCGTGAAGCAGAAAGCCAGGGTTG TGCCGCTGCCGCCGGTTGATAATTGCCCGCCTGAGCCGAGGCCCCCTTTT TTATGTTTGGCATACAGACACTAGTACGATGTAAACACAAAGCCACGTGA AGATGATACACAACAAAGCAGCAGCAGCCACCTTAGCTACAGCGGTTTTA ACCTTGCCACAGCTGGTGGTTTTGCGCGCACTGCTGGTTGTGCAATGAGG AGAGTTCGTTGCGCTCTCTGCCTGTCTCTCTCTTTCTCTCTCTATCTGTG TGTGTTGTGGGCGCACGGTAGCAGCAGCACACACAGAAGTGCAGCGTTTT GGACACAGAGCCCCAAATAACCAAACGGACCTTAGTCATGGACGTAAAAT TCATCAAGGAAAACAGGTCACACATATCAGAGCCTCTTGTGTGCGTTGCG TCGCTCCTTTTTTCGGTTTCGTTTTCTTCGTACATCAGGTGGAATGGTAT GCGAAGGCGGTAACTTCATCGGGTTCATCGACGGGACAGTCAGGAGGAAC ACTCGCCCAGGGGGGGATCCGGCAGTGCAGGAGCAATTGTACGACGGTCC CCACTGCGCCCACGGCCTTGCTTGGCAATCAGTTGTCTTTGCTCACGGAA TGATGGAAATTTGGGGACCGGAGACAGGGCGGCGACACGACTCCCTTCTT CTGTCGAGGAGCGGACTGAACGGGAGACTCGCCGCTCTGCAGGAAGGCAA CACTACGCAGTACAGGGTGTACGGCGATGCTGCATACCCCATCTTGTCTC ACGTCGACCGGGGTTTCCGCGGAGAGGGTCTCACAGATGCGCAGAAGGCC TACAACAAGGAGCTTTCTAAGGTCAGGGTGGCGGTGGAGTGGCAGTTCGG CAAGGTCGTGCAGATTTTCCCGTTTGTCGACTTCGCGAAAAACCTGAAGA TCAGGCTGCAGGCGGTCGCGAAGTACTACGCCTTGGCTGTACTGCTCACC AACGCGCACACCTGCATCTCCGGGAGCATCACCGGCTTCTACTTCGACAT GACCGCGCCGTCACTAGAGGCGTACTTTGCGTTCTAGATGTAATTCGTAT GAGAGATTGTCGATTTGTTGGCCGTACGTTGGCAATCGAGTTGGGGGGGT CGCGAAGTTGGGCGTGTTGCTGTCGGGGGCTGTGCCCAAAGTCGTCTTGG CTATGACTATCGCAATCTGTACCTTGTTTTCGTACCCAATTTCATCCGGT CTTTTGGGGTTCGTCATGGGTTGCATTTTGTTTTGTCGGTCCAACGCGTT TTACTTTTTTGTTTCACGTCTTTACAAGGTGCCACTTCGCCGCTCGTGTG TACCAGGTACCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig173:438634..440197+

>mRNA_P-littoralis_Contig173.83.1 ID=mRNA_P-littoralis_Contig173.83.1|Name=mRNA_P-littoralis_Contig173.83.1|organism=Pylaiella littoralis U1_48|type=CDS|length=624bp|location=Sequence derived from alignment at P-littoralis_Contig173:438634..440197+ (Pylaiella littoralis U1_48)
ATGTGCAAGAAGATAGAAGCGAAAGGTGGAATGGTATGCGAAGGCGGTAA
CTTCATCGGGTTCATCGACGGGACAGTCAGGAGGAACACTCGCCCAGGGG
GGGATCCGGCAGTGCAGGAGCAATTGTACGACGGTCCCCACTGCGCCCAC
GGCCTTGCTTGGCAATCAGTTGTCTTTGCTCACGGAATGATGGAAATTTG
GGGACCGGAGACAGGGCGGCGACACGACTCCCTTCTTCTGTCGAGGAGCG
GACTGAACGGGAGACTCGCCGCTCTGCAGGAAGGCAACACTACGCAGTAC
AGGGTGTACGGCGATGCTGCATACCCCATCTTGTCTCACGTCGACCGGGG
TTTCCGCGGAGAGGGTCTCACAGATGCGCAGAAGGCCTACAACAAGGAGC
TTTCTAAGGTCAGGGTGGCGGTGGAGTGGCAGTTCGGCAAGGTCGTGCAG
ATTTTCCCGTTTGTCGACTTCGCGAAAAACCTGAAGATCAGGCTGCAGGC
GGTCGCGAAGTACTACGCCTTGGCTGTACTGCTCACCAACGCGCACACCT
GCATCTCCGGGAGCATCACCGGCTTCTACTTCGACATGACCGCGCCGTCA
CTAGAGGCGTACTTTGCGTTCTAG
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