mRNA_P-littoralis_Contig173.81.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig173.81.1
Unique NamemRNA_P-littoralis_Contig173.81.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig173.81.1 vs. uniprot
Match: UPI00106C0330 (uncharacterized protein LOC114542457 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C0330)

HSP 1 Score: 76.3 bits (186), Expect = 1.220e-13
Identity = 49/136 (36.03%), Postives = 69/136 (50.74%), Query Frame = 1
Query:    7 LFISAENQEDEDEANRLRHLGAMVVMVVCRIWRDEAELAPTIRGGEPVIDDLTDDEAWANYRFRKPDLKRLFQAFKFPGAYLRLRNRARYPSESAFLLLLRRMRYPGRWQDLQREFGREYTQLSRIFNEVVDWAYD 414
            LF S     DED+ + +  +  M     CR+ R               I+DL+D +    +RF K D+ RLF A + P AY R   R +     A ++LLRR+ YP RW DL   FGR  +QLS IFN+++D  Y+
Sbjct:   16 LFESDSESSDEDDLD-IALIEHMFTSTKCRLPRLN-------------IEDLSDWQCEKMFRFHKDDMLRLFAALRIP-AYYRAEQRTKASGMEALMILLRRLAYPNRWCDLVGIFGRSESQLSLIFNKILDDIYN 136          
BLAST of mRNA_P-littoralis_Contig173.81.1 vs. uniprot
Match: UPI000A2A66BF (protein ALP1-like isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A66BF)

HSP 1 Score: 70.9 bits (172), Expect = 1.190e-11
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  109 EAELAPTIRGGEPVIDDLTDDEAWANYRFRKPDLKRLFQAFKFPGAYLRLRNRARYPSESAFLLLLRRMRYPGRWQDLQREFGREYTQLSRIFNEVVDWAYDN 417
            EA   P ++     ++DL+D +    +RF K DL RL  A + P  Y+  +   +       L++LRR+ YP RW DLQ  FGR  ++LS IFNEV+D  Y++
Sbjct:   82 EASCTPRLK-----LEDLSDTQCQQMFRFEKQDLYRLRDALQVPANYICSQG-TKATGLEGLLIMLRRLAYPNRWCDLQSLFGRSESELSLIFNEVIDDIYES 178          
BLAST of mRNA_P-littoralis_Contig173.81.1 vs. uniprot
Match: D8LJH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH1_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.940e-10
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  250 LRLRNRARYPSESAFLLLLRRMRYPGRWQDLQREFGREYTQLSRIFNEVVDWAYD 414
            +RL N + +  E AFLLLL RMRYPGR  DL++ FGREY+QLSR+F    D+ ++
Sbjct:   46 VRLENGSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFE 100          
BLAST of mRNA_P-littoralis_Contig173.81.1 vs. uniprot
Match: A0A6S7K945_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K945_PARCT)

HSP 1 Score: 64.7 bits (156), Expect = 3.270e-10
Identity = 35/87 (40.23%), Postives = 49/87 (56.32%), Query Frame = 1
Query:  151 IDDLTDDEAWANYRFRKPDLKRLFQAFKFPGAYLRLRNRARYPSESAFLLLLRRMRYPGRWQDLQREFGREYTQLSRIFNEVVDWAY 411
            +D  TD+E   N+RF+K D+  L  A + P  +L  +N     S     +LLRR+ YP R  D+   FGR  T+LS IFN VVD+ +
Sbjct:   50 LDKYTDEECVLNFRFQKVDVLHLVTALRLPNQFL-CKNGTIAGSLGGLCVLLRRLAYPNRLTDMIAMFGRSKTELSMIFNNVVDFVF 135          
BLAST of mRNA_P-littoralis_Contig173.81.1 vs. uniprot
Match: UPI001CF223A5 (uncharacterized protein LOC122949353 isoform X1 n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF223A5)

HSP 1 Score: 66.2 bits (160), Expect = 5.040e-10
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  151 IDDLTDDEAWANYRFRKPDLKRLFQAFKFPGAYLRLRNRARYPSESAFLLLLRRMRYPGRWQDLQREFGREYTQLSRIFNEVVDWAYD 414
            + D+ D +  A +RF K D+KRL  A + P  Y+  +       E A ++LL+R+ YP RW DL   FGR  ++LS IFN+++D  YD
Sbjct:   94 LQDIPDVQCEAMFRFAKGDMKRLRDALQLPANYICSQGTIATGME-ALMILLKRLAYPNRWCDLVPVFGRTVSELSLIFNKIMDDIYD 180          
BLAST of mRNA_P-littoralis_Contig173.81.1 vs. uniprot
Match: UPI000F5553D4 (uncharacterized protein LOC113664837 isoform X1 n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F5553D4)

HSP 1 Score: 65.1 bits (157), Expect = 1.190e-9
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  151 IDDLTDDEAWANYRFRKPDLKRLFQAFKFPGAYLRLRNRARYPSESAFLLLLRRMRYPGRWQDLQREFGREYTQLSRIFNEVVDWAYD 414
            + D+ D +  A +RF K D++RL    + P  Y+  +       E A ++LLRR+ YP RW DL   FGR  ++LS IFN+++D  YD
Sbjct:   54 LQDIPDIQCEAMFRFPKGDMERLRDTLQLPANYICSQGTIATGME-ALMILLRRLAYPNRWSDLVPVFGRTVSELSLIFNKIMDDIYD 140          
BLAST of mRNA_P-littoralis_Contig173.81.1 vs. uniprot
Match: A0A6J7ZWW5_MYTCO (Uncharacterized protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J7ZWW5_MYTCO)

HSP 1 Score: 62.4 bits (150), Expect = 1.470e-9
Identity = 35/112 (31.25%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   82 MVVCRIWRDEAELAPTIRGGEPVIDDLTDDEAWANYRFRKPDLKRLFQAFKFPGAYLRLRNRARYPSESAFLLLLRRMRYPGRWQDLQREFGREYTQLSRIFNEVVDWAYDN 417
            +++  + ++E +  P I+     ++ LT+++  + +RF K D++ L +A + P   +   NR          ++LRR+ YP R +DL+  FGR  T+LS I NEV+D+ +DN
Sbjct:   17 LLLLSLCKEEKDNFPGIK-----VEKLTNEQCRSFFRFDKDDIEILRRALRIPQKVV-CSNRTTARGIDGLCMVLRRLAYPSRLEDLEYLFGRSKTELSLIINEVLDYIHDN 122          
BLAST of mRNA_P-littoralis_Contig173.81.1 vs. uniprot
Match: A0A6P8HEE0_ACTTE (uncharacterized protein LOC116291725 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HEE0_ACTTE)

HSP 1 Score: 64.7 bits (156), Expect = 1.630e-9
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  157 DLTDDEAWANYRFRKPDLKRLFQAFKFPGAYLRLRNRARYPSESAFLLLLRRMRYPGRWQDLQREFGREYTQLSRIFNEVVDWAYD 414
            D+TD +    +RF+K D++ L    + P  ++    R +     A ++LLRR+ YP RW DL   FGR  ++LS IFN+V+D  YD
Sbjct:   56 DITDADCETMFRFQKNDMEHLLDCLQIPEHFV-CSQRTKATGMEALMILLRRLAYPNRWCDLVPIFGRPESELSLIFNKVLDDIYD 140          
BLAST of mRNA_P-littoralis_Contig173.81.1 vs. uniprot
Match: A0A836CJM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJM3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.070e-9
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1
Query:  115 ELAPTIRGGEPVIDDLTDDEAWANYRFRKPDLKRLFQAFKFPGAYLRLRNRARYPSESAFLLLLRRMRYPGRWQDLQREFGREYTQLSRIF 387
            E AP  R    ++    +D  W  +RFRK  ++RL +A   P   + L NR++   + A L+ L R+  P R  D++  FGRE TQLSRIF
Sbjct:   15 EYAPIRRLNRTLVS-FAEDACWMQFRFRKEHIQRLRRALGVPDVVV-LPNRSKDDGDEALLIFLHRLSRPSRLTDVKETFGREETQLSRIF 103          
BLAST of mRNA_P-littoralis_Contig173.81.1 vs. uniprot
Match: A0A6J8BI25_MYTCO (DDE Tnp4 domain-containing protein n=3 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BI25_MYTCO)

HSP 1 Score: 62.4 bits (150), Expect = 5.540e-9
Identity = 39/127 (30.71%), Postives = 70/127 (55.12%), Query Frame = 1
Query:   46 ANRLRHLGAMV---VMVVCRIWRDEAELAPTIRGGEPVIDDLTDDEAWANYRFRKPDLKRLFQAFKFPGAYLRLRNRARYPSESAFLLLLRRMRYPGRWQDLQREFGREYTQLSRIFNEVVDWAYDN 417
            A +L+ L A+     +++  + ++E  + P I      ++ LT+++  + +RF K D++ L +A + P   +   NR          ++LRR+ YP R +DL+  FGR  T+LS I NEV+D+ +DN
Sbjct:    2 AEKLKVLAALEDSDELLLLSLCKEEKGIFPGIE-----VEKLTNEQCRSFFRFDKDDIEILRRAMRIPEKVV-CSNRTTARGIDGLCMVLRRLAYPSRLEDLEYIFGRSKTELSLIINEVLDYLHDN 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig173.81.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00106C03301.220e-1336.03uncharacterized protein LOC114542457 n=1 Tax=Dendr... [more]
UPI000A2A66BF1.190e-1137.86protein ALP1-like isoform X1 n=2 Tax=Exaiptasia di... [more]
D8LJH1_ECTSI2.940e-1054.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6S7K945_PARCT3.270e-1040.23Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
UPI001CF223A55.040e-1039.77uncharacterized protein LOC122949353 isoform X1 n=... [more]
UPI000F5553D41.190e-938.64uncharacterized protein LOC113664837 isoform X1 n=... [more]
A0A6J7ZWW5_MYTCO1.470e-931.25Uncharacterized protein n=1 Tax=Mytilus coruscus T... [more]
A0A6P8HEE0_ACTTE1.630e-938.37uncharacterized protein LOC116291725 n=1 Tax=Actin... [more]
A0A836CJM3_9STRA2.070e-938.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6J8BI25_MYTCO5.540e-930.71DDE Tnp4 domain-containing protein n=3 Tax=Mytilus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig173contigP-littoralis_Contig173:437735..438747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7668.SPU_016560-tr
PFAMsDDE_Tnp_4
Model size418
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.1e-08
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota,3A38W@33154|Opisthokonta,3BS4I@33208|Metazoa,3D9UV@33213|Bilateria
DescriptionDDE superfamily endonuclease
Cds size417
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789834.958099-CDS-P-littoralis_Contig173:437734..4380511680789834.958099-CDS-P-littoralis_Contig173:437734..438051Pylaiella littoralis U1_48CDSP-littoralis_Contig173 437735..438051 +
1680789834.973653-CDS-P-littoralis_Contig173:438647..4387471680789834.973653-CDS-P-littoralis_Contig173:438647..438747Pylaiella littoralis U1_48CDSP-littoralis_Contig173 438648..438747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig173.81.1prot_P-littoralis_Contig173.81.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig173 437735..438747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig173.81.1

>prot_P-littoralis_Contig173.81.1 ID=prot_P-littoralis_Contig173.81.1|Name=mRNA_P-littoralis_Contig173.81.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
MALFISAENQEDEDEANRLRHLGAMVVMVVCRIWRDEAELAPTIRGGEPV
IDDLTDDEAWANYRFRKPDLKRLFQAFKFPGAYLRLRNRARYPSESAFLL
LLRRMRYPGRWQDLQREFGREYTQLSRIFNEVVDWAYDN
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mRNA from alignment at P-littoralis_Contig173:437735..438747+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig173.81.1 ID=mRNA_P-littoralis_Contig173.81.1|Name=mRNA_P-littoralis_Contig173.81.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1013bp|location=Sequence derived from alignment at P-littoralis_Contig173:437735..438747+ (Pylaiella littoralis U1_48)
ATGGCGCTGTTTATCTCCGCAGAGAATCAAGAGGATGAGGACGAGGCAAA CCGGTTGAGGCATCTAGGTGCCATGGTCGTCATGGTCGTGTGTCGCATAT GGCGCGATGAGGCGGAGCTGGCGCCAACCATTCGCGGGGGCGAACCCGTC ATAGACGATCTCACCGATGACGAAGCGTGGGCAAACTACAGGTTTCGCAA GCCGGACTTGAAGAGGTTGTTTCAAGCCTTCAAGTTTCCGGGGGCGTATC TTCGTCTGCGCAACCGGGCTCGCTACCCCAGCGAGAGCGCCTTCCTCCTT CTCCTCAGGCGTATGAGGTAAGCTGGTCTTGGTCGCGATATGAGTCGCTT AGGTCTCGGGGCATGTGACATGACACAACAGACGTACTGCTGTCACAGCA AGCACACCGCTGATTCGAACAACCGCTGGTTCAAACAAGATGAAAACAAG ATAAACTATCGAAAATATTTAGCAGTAGCTATACTAAATCTAGTACGTTT TAGACTGCTTCCTGGTGTTTTTTTTGTACAGCAGTAGCTATACTAAATCT AGTACGTTTTAGACTGCTTCCTGGTGTTTTTTTTTGTACAGCAGTAGCTT TACTAAATCTAGTACGTTTTAGACTGCTTCCTGGTGGTTCTTTTTTGTAC GACAGTAGCCATGCTAAATCTGGTACGTTTTAGACTGCTTCCTGTCCTTG GGTTTGTCTTTGCTGTACCGCAGTGTACGAAGCATCGCGGTGAAAATATA CGTTTTATAATAGTAGAACGTGGTTTTAGAGCAGAAAAAAAAAAGTATAA ATACGAGTAAAAACCAAGCAGCAAAGGCCAGCAGCTGATTTGAGTAGGTT TGAACATTTTGCTTTTACTTATCCCAGCTGCACGGTTCCATCGCCCCGGT TGCTCCAACGCAGGTATCCTGGACGCTGGCAGGACCTACAAAGGGAGTTC GGCCGAGAGTACACCCAGTTGAGTCGAATTTTCAACGAGGTGGTCGACTG GGCGTACGACAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig173:437735..438747+

>mRNA_P-littoralis_Contig173.81.1 ID=mRNA_P-littoralis_Contig173.81.1|Name=mRNA_P-littoralis_Contig173.81.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig173:437735..438747+ (Pylaiella littoralis U1_48)
ATGGCGCTGTTTATCTCCGCAGAGAATCAAGAGGATGAGGACGAGGCAAA
CCGGTTGAGGCATCTAGGTGCCATGGTCGTCATGGTCGTGTGTCGCATAT
GGCGCGATGAGGCGGAGCTGGCGCCAACCATTCGCGGGGGCGAACCCGTC
ATAGACGATCTCACCGATGACGAAGCGTGGGCAAACTACAGGTTTCGCAA
GCCGGACTTGAAGAGGTTGTTTCAAGCCTTCAAGTTTCCGGGGGCGTATC
TTCGTCTGCGCAACCGGGCTCGCTACCCCAGCGAGAGCGCCTTCCTCCTT
CTCCTCAGGCGTATGAGGTATCCTGGACGCTGGCAGGACCTACAAAGGGA
GTTCGGCCGAGAGTACACCCAGTTGAGTCGAATTTTCAACGAGGTGGTCG
ACTGGGCGTACGACAAC
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