mRNA_P-littoralis_Contig173.63.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig173.63.1
Unique NamemRNA_P-littoralis_Contig173.63.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig173.63.1 vs. uniprot
Match: D8LFW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW2_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 9.200e-41
Identity = 76/140 (54.29%), Postives = 91/140 (65.00%), Query Frame = 1 
Query:  136 NRLFKDDNKVPAGSWVQHLREEDGHMFWRNNATGECTRDLWFGPRGSEGNSQHRHLVPASFAPVFVEPAPPKPS----------DKKNKKITQPKVLATTWFC------QPWEEIFHPVTGKKHWRHRQTGDKRHTDPLF 507
            N+ F+DD+ VPAGSWVQHL ++ G+MFWRNN TGECTRDL+FGP GS    Q+R LVPASFAP FV+      S           KK+    Q    A  WF       QPWEEI+HPVTG+KHWRHR TG++R  DPL+
Sbjct:   67 NKGFEDDDNVPAGSWVQHLHKQ-GYMFWRNNHTGECTRDLFFGPWGSYPTVQYRELVPASFAPTFVDKNEENASATVDKGKGKGSKKDXXXXQGPPPAI-WFVSLLPELQPWEEIYHPVTGEKHWRHRATGEERQKDPLW 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig173.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFW2_ECTSI9.200e-4154.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig173contigP-littoralis_Contig173:237896..239769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size929
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_005300.1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789834.2834342-UTR-P-littoralis_Contig173:237895..2381051680789834.2834342-UTR-P-littoralis_Contig173:237895..238105Pylaiella littoralis U1_48UTRP-littoralis_Contig173 237896..238105 +
1680789834.3275251-UTR-P-littoralis_Contig173:239350..2397691680789834.3275251-UTR-P-littoralis_Contig173:239350..239769Pylaiella littoralis U1_48UTRP-littoralis_Contig173 239351..239769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789834.2946758-CDS-P-littoralis_Contig173:238105..2381131680789834.2946758-CDS-P-littoralis_Contig173:238105..238113Pylaiella littoralis U1_48CDSP-littoralis_Contig173 238106..238113 +
1680789834.3056083-CDS-P-littoralis_Contig173:238379..2385721680789834.3056083-CDS-P-littoralis_Contig173:238379..238572Pylaiella littoralis U1_48CDSP-littoralis_Contig173 238380..238572 +
1680789834.3147764-CDS-P-littoralis_Contig173:239251..2393501680789834.3147764-CDS-P-littoralis_Contig173:239251..239350Pylaiella littoralis U1_48CDSP-littoralis_Contig173 239252..239350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig173.63.1prot_P-littoralis_Contig173.63.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig173 238106..239350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig173.63.1

>prot_P-littoralis_Contig173.63.1 ID=prot_P-littoralis_Contig173.63.1|Name=mRNA_P-littoralis_Contig173.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MFWRNNATGECTRDLWFGPRGSEGNSQHRHLVPASFAPVFVEPAPPKPSD
KKNKKITQPKVLATTWFCQPWEEIFHPVTGKKHWRHRQTGDKRHTDPLF*
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mRNA from alignment at P-littoralis_Contig173:237896..239769+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig173.63.1 ID=mRNA_P-littoralis_Contig173.63.1|Name=mRNA_P-littoralis_Contig173.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1874bp|location=Sequence derived from alignment at P-littoralis_Contig173:237896..239769+ (Pylaiella littoralis U1_48)
GGCGAAAAGAGCAGTAGCAATTCCGTTCATTGGGCTGACGACAACAGCGA
GAACGGTGACACGAAACAGGAGGGCGAAAAGAGCAGCAGCAGCAGCAGCA
ACAACAACAACAAGAGCAGCAAGAGAGACAAGAACAACAGACTGTTCAAG
GACGACAACAAGGTTCCGGCCGGCTCGTGGGTCCAGCACTTGCGCGAGGA
GGATGGCCACATGTTCTGGTGAGCGTGCAAGTCCTACTGGAGGACCAGAG
GCATGACTGCCTTCGTATAGCTTTATCCACTACGTATGTATTAGTGGGGG
TGTTTCGTCTGGTGCTTGGGTTACGATTCCTTCAGGAGGGGAGAAGTGCA
ACCCTTGGCCGCTTTGCTCCGTCCTACTCCGTTCTACCCCACTTGACTCG
ACTCTACTCGACACGACTCATACCCACTCAAATTTACTCCGACGACCCCC
GCCGTTCATTCCATGCCACACCGCACCACACTAGGCGCAACAACGCCACG
GGCGAGTGCACCCGCGATCTCTGGTTCGGCCCGAGGGGTTCGGAGGGTAA
CTCGCAGCACCGCCACCTCGTGCCCGCCTCTTTCGCGCCGGTCTTCGTCG
AGCCGGCGCCCCCAAAGCCGAGCGACAAGAAAAACAAGAAGATCACGCAG
CCCAAAGTGCTGGCCACGACGTGGTTTGTGAGTTTTGTTGACGACACTTT
TTGCTCTTTCGCTTCCTATCGGCATGCTTCACTCGATGACACTACCACTG
CTGTGCATGAATCACGTGGGGACCCACACGAAGCACGATCTTTTAAGTCT
ACGTACAGCATCGGAAAACAGGCGGGTTTCGATTCCCGATGAAGAATGAT
CAAAACACGTTGAAAAGTTTTTGTAGTCGTTTTCCCCCGTTCTCTCCGTC
GTGGTGTACGTTAGTTACCTCCGATCCGGGGTTGTCGCGCATGAAAGTAA
AGAAGCCTGACCGAACAGGTTCCCCAAGGTCTCCCCTGCAGTGCTTGTAT
TCGAACTTTGAGCTACATGTGAGGCGTGAAAGAATTATGGTTACTGTAGT
TCGGAAAAATATTCGTCTTTTGACCTTCCTGGATCACATCTCTTCCTGCA
CGTTGGCACCCCCCTCGCTATCGAGAAATCATGCGAAGGGCAGCGGGGGG
GGGGGGGGGGGCATAGTACCACTGCCGTGCAAACATTTCAGCGGAGATGT
TTCATGCGCACCGACTGGGACACCTGCACCGACGGACTGTTGCATCAACG
TAAGCCTCCCCCCCCTCCCTCCCTCTACGCTTCCCGTTCCGACGTGTGCC
GGAAACAATTTGCGGCAAAATGAAAAAACAATACGTCGGCCGTATGCATG
ATGCAGTGCCAACCGTGGGAGGAGATTTTCCATCCCGTGACGGGAAAGAA
GCACTGGCGCCACCGCCAGACTGGTGACAAAAGGCACACGGACCCTCTCT
TCTGATGCCTGCCAGATGGAAGGACAAACAAGAGGTGCAAGGATTTATTC
ACTTAAACCTCCTGAAGCGTTGAAAACTATCGGTGATCCATGCCATCTTC
GTCCCTCCAGTGATGGCATGAGGACTGGGTGAGATGACCCACGCGGTGCA
TGTACAGTACGGCGATCGCATGTGTCTCTGTTGGTGTCGGCGGTGATGAG
GGACGGGGATCCGAGAGACGGTCGACATCCCCTCTTAGTGGTGGTGGTGA
TCGCGGTGCGATTTGGCGGACGGGGAAGACGAGCCGACGACTCGACTAGG
GTCTCGCCGGTTGTTGTTAGAGCGCACCACTGGCGATAATGACACGACCC
GCAAAGTTGGACGTACGTTTTTCGGGGGGGGGTGTCGGGTTCGCGGTTTC
ACGCACACGATAACAGACACAGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig173:237896..239769+

>mRNA_P-littoralis_Contig173.63.1 ID=mRNA_P-littoralis_Contig173.63.1|Name=mRNA_P-littoralis_Contig173.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig173:237896..239769+ (Pylaiella littoralis U1_48)
ATGTTCTGGCGCAACAACGCCACGGGCGAGTGCACCCGCGATCTCTGGTT
CGGCCCGAGGGGTTCGGAGGGTAACTCGCAGCACCGCCACCTCGTGCCCG
CCTCTTTCGCGCCGGTCTTCGTCGAGCCGGCGCCCCCAAAGCCGAGCGAC
AAGAAAAACAAGAAGATCACGCAGCCCAAAGTGCTGGCCACGACGTGGTT
TTGCCAACCGTGGGAGGAGATTTTCCATCCCGTGACGGGAAAGAAGCACT
GGCGCCACCGCCAGACTGGTGACAAAAGGCACACGGACCCTCTCTTCTGA
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