mRNA_P-littoralis_Contig173.61.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig173.61.1
Unique NamemRNA_P-littoralis_Contig173.61.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig173.61.1 vs. uniprot
Match: D8LFW4_ECTSI (Uracil-DNA glycosylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFW4_ECTSI)

HSP 1 Score: 429 bits (1104), Expect = 1.060e-141
Identity = 206/239 (86.19%), Postives = 222/239 (92.89%), Query Frame = 3 
Query:  312 AVAKRQKDTKTAGPSPIKEQGWAAALSGETSKPYFGRLQTFLDREYSTKVIYPPREKLFHALEACPFGDVKVVILGQDPYHQPGQAHGLAFSVMKGVPQPPSLRNMVKEAVSCCGISPTKSGTLDSWCRQGVLLLNTVLSVERSKAHSHKNQGWETFTDAVVRELNKGNRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANAALEELGHGSVDWNVL 1028
            AV+KR K + + G SPIKE GWA ALSGET+KPYFGRLQ FLD++Y++KVIYPPR+KLF+A ++CP  +VKVVILGQDPYHQPGQAHGLAFSVMKGV QPPSLRNMVKEAVSCCGI+PTKSG LDSWC QGVLLLNTVLSVERSKA+SHKNQGWE FTDAVVRELNKG+RRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKAN ALEELGHG VDWNVL
Sbjct:   43 AVSKRPKISSSEG-SPIKEDGWATALSGETTKPYFGRLQAFLDKQYASKVIYPPRDKLFNAFDSCPLSNVKVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMVKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGWEKFTDAVVRELNKGDRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANDALEELGHGGVDWNVL 280
[Close]
BLAST of mRNA_P-littoralis_Contig173.61.1 vs. uniprot
Match: A0A836CBN7_9STRA (Uracil-DNA glycosylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN7_9STRA)

HSP 1 Score: 286 bits (731), Expect = 3.080e-87
Identity = 134/224 (59.82%), Postives = 166/224 (74.11%), Query Frame = 3 
Query:  357 PIKEQGWAAALSGETSKPYFGRLQTFLDREYST-KVIYPPREKLFHALEACPFGDVKVVILGQDPYHQPGQAHGLAFSVMKGVPQPPSLRNMVKEAVSCCGISPTKSGTLDSWCRQGVLLLNTVLSVERSKAHSHKNQGWETFTDAVVRELNKGNRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANAALEELGHGSVDWNV 1025
            P+ +  W+ ALS E  KPYF +L  FL ++ +  K IYPP++K+FHAL  CP   V+VVILGQDPYH PGQAHGL+FSV +GV QPPSLRN+VKEA +CCG  PTK+G L  W  QGVLLLNTVL+VE+    SH  +GWE FTD VVR LN+  R +VFLLWGKPSQ+KGA I+ ++HRVITC+HPSPL AT+  +PF GS CF +AN  L + G   +DWN+
Sbjct:    2 PLTDPVWSQALSPEFGKPYFVKLLAFLAKQAAAGKAIYPPKDKVFHALNTCPLDRVRVVILGQDPYHGPGQAHGLSFSVAQGVAQPPSLRNIVKEATACCGTKPTKNGCLTPWAVQGVLLLNTVLTVEKGAPLSHHKKGWEQFTDEVVRLLNRQERTIVFLLWGKPSQQKGAHINRARHRVITCSHPSPLGATKTKEPFTGSRCFARANDMLVKSGQEPIDWNL 225
[Close]
BLAST of mRNA_P-littoralis_Contig173.61.1 vs. uniprot
Match: A0A024T8C9_9STRA (Uracil-DNA glycosylase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T8C9_9STRA)

HSP 1 Score: 273 bits (699), Expect = 8.580e-82
Identity = 131/225 (58.22%), Postives = 165/225 (73.33%), Query Frame = 3 
Query:  354 SPIKEQGWAAALSGETSKPYFGRLQTFLDREYSTKV-IYPPREKLFHALEACPFGDVKVVILGQDPYHQPGQAHGLAFSVMKGVPQPPSLRNMVKEAVSCCGISPTKSGTLDSWCRQGVLLLNTVLSVERSKAHSHKNQGWETFTDAVVRELNKGNRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANAALEELGHGSVDWNV 1025
            S + E  W A L+ E    YF RL+TFL +E   K  I+PPRE++F AL  CPF  +KVVI+GQDPYH PGQAHGL FSV +GVP PPSL+N+ KEA S  GI   K G+L SWC QGVL+LN VL+V  ++A+SHK QGWETFTDAV+R +N  ++ +VFLLWGKP+Q+KGALI  +KH V+T +HPSPL AT+  +PFIGS+CF KANA L + G   +DW +
Sbjct:   56 SLLTEPKWTALLAPEFKMAYFRRLETFLAQEQKKKAAIFPPREEIFAALNLCPFDKIKVVIIGQDPYHGPGQAHGLCFSVARGVPPPPSLKNIYKEANSDIGIPIPKHGSLLSWCNQGVLMLNAVLTVRATEANSHKKQGWETFTDAVIRLINDQSQNVVFLLWGKPAQEKGALISRTKHCVLTSSHPSPLGATKTTEPFIGSKCFSKANAYLVQHGKDEIDWTL 280
[Close]
BLAST of mRNA_P-littoralis_Contig173.61.1 vs. uniprot
Match: A0A6G0XWG6_9STRA (Uracil-DNA glycosylase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWG6_9STRA)

HSP 1 Score: 266 bits (680), Expect = 4.430e-79
Identity = 129/223 (57.85%), Postives = 158/223 (70.85%), Query Frame = 3 
Query:  360 IKEQGWAAALSGETSKPYFGRLQTFLDREYSTKV-IYPPREKLFHALEACPFGDVKVVILGQDPYHQPGQAHGLAFSVMKGVPQPPSLRNMVKEAVSCCGISPTKSGTLDSWCRQGVLLLNTVLSVERSKAHSHKNQGWETFTDAVVRELNKGNRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANAALEELGHGSVDWNV 1025
            + E  W   L+ E  K YF +L+ FL RE   K  IYPP+  +F AL  CPF  +KVVI+GQDPYH PGQAHGL FSV +GVP PPSL+N+ KEA S  GI     G+L SWC QGVLLLNTVL+V  S+A+SHK QGWETFTDAV+R +N+    +VFLLWGKP+Q KGALI  +KH +IT +HPSPL AT+  +PFIGS+CF +AN  L + G   +DW V
Sbjct:   55 LTEPKWKDLLAPEFKKSYFKQLEAFLVREQKKKATIYPPKADIFAALNLCPFDGIKVVIIGQDPYHGPGQAHGLCFSVQRGVPPPPSLKNIYKEACSDVGIPKPSHGSLLSWCNQGVLLLNTVLTVRASEANSHKKQGWETFTDAVIRLVNEHATGVVFLLWGKPAQDKGALISRAKHCIITSSHPSPLGATKTNEPFIGSKCFSRANEYLTKSGKTPIDWTV 277
[Close]
BLAST of mRNA_P-littoralis_Contig173.61.1 vs. uniprot
Match: A0A7S2RYA9_9STRA (Uracil-DNA glycosylase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYA9_9STRA)

HSP 1 Score: 268 bits (684), Expect = 6.180e-79
Identity = 126/219 (57.53%), Postives = 158/219 (72.15%), Query Frame = 3 
Query:  375 WAAALSGETSKPYFGRLQTFLDREYST-KVIYPPREKLFHALEACPFGDVKVVILGQDPYHQPGQAHGLAFSVMKGVPQPPSLRNMVKEAVSCCGISPTKSGTLDSWCRQGVLLLNTVLSVERSKAHSHKNQGWETFTDAVVRELNKGNRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANAALEELGHGSVDWNVL 1028
            WAA +  E S+PYF  L  FL  E S  K ++PPR ++F A   C F +V+VVI+GQDPYH PGQAHGL+FSV  GV  PPSLRNM+KEA SC GI+    G L  W +QGVL+LN VL+VE  KA+SH+ +GWE FTDAV+R +NK    +VFLLWGKP+Q+KG  I+ SKH VITC+HPSPL+A +  +PF+GS CF +AN AL E+G   VDW +L
Sbjct:  111 WAAVVDKEFSRPYFVNLVKFLKSEASKGKRVFPPRPEIFSAFSHCDFDNVRVVIIGQDPYHGPGQAHGLSFSVKHGVAVPPSLRNMIKEAQSCEGIAKPNHGNLTHWAKQGVLMLNAVLTVEAHKANSHQKKGWEQFTDAVIRAVNKREAGVVFLLWGKPAQEKGRSINRSKHTVITCSHPSPLAAMKTSEPFLGSRCFSRANEALVEMGQSKVDWRIL 329
[Close]
BLAST of mRNA_P-littoralis_Contig173.61.1 vs. uniprot
Match: W4H8I4_9STRA (Uracil-DNA glycosylase n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8I4_9STRA)

HSP 1 Score: 263 bits (672), Expect = 6.170e-78
Identity = 126/223 (56.50%), Postives = 157/223 (70.40%), Query Frame = 3 
Query:  360 IKEQGWAAALSGETSKPYFGRLQTFLDREYSTKV-IYPPREKLFHALEACPFGDVKVVILGQDPYHQPGQAHGLAFSVMKGVPQPPSLRNMVKEAVSCCGISPTKSGTLDSWCRQGVLLLNTVLSVERSKAHSHKNQGWETFTDAVVRELNKGNRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANAALEELGHGSVDWNV 1025
            + E  W   L+ E  K YF +L+ FLDRE   K  I+PPR ++F AL  CPF  + VVI+GQDPYH PGQAHGL FSV +GVP PPSL+N+ KEA    GI     G+L SWCRQGVL+LN VL+V  ++A+SHK QGWETFTDAV+R +N     +VFLLWGKP+Q+KGALI  +KH V+T +HPSPL AT+  +PFIGS+CF KANA L       +DW +
Sbjct:   54 VTEPTWNDLLAPEFKKAYFKQLEAFLDREQKKKAAIFPPRHEIFAALNLCPFDSINVVIIGQDPYHGPGQAHGLCFSVARGVPPPPSLKNIYKEANKDVGIPVPTHGSLLSWCRQGVLMLNAVLTVRATEANSHKKQGWETFTDAVIRLVNDQADHVVFLLWGKPAQEKGALISRTKHCVLTSSHPSPLGATKTAEPFIGSKCFSKANAYLASHNKPEIDWTL 276
[Close]
BLAST of mRNA_P-littoralis_Contig173.61.1 vs. uniprot
Match: A0A2R5GJU8_9STRA (Uracil-DNA glycosylase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJU8_9STRA)

HSP 1 Score: 263 bits (673), Expect = 7.660e-78
Identity = 126/221 (57.01%), Postives = 159/221 (71.95%), Query Frame = 3 
Query:  366 EQGWAAALSGETSKPYFGRLQTFLDREYST-KVIYPPREKLFHALEACPFGDVKVVILGQDPYHQPGQAHGLAFSVMKGVPQPPSLRNMVKEAVSCCGISPTKSGTLDSWCRQGVLLLNTVLSVERSKAHSHKNQGWETFTDAVVRELNKGNRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANAALEELGHGSVDWNV 1025
            E GW A L  E  KPY+  L  FL +E    K I+PP+  +F ALE CPF  VKVVILGQDPYH PGQAHGLAFSV +G+  PPSLRNM KEA++   IS   +G+L  W +QGVLLLNTVL+V + +A+SHK++GWE FTDA++R LNK    LVF+LWGK +QK  A +D SKH VIT +HPSPL A++  +PFIGS+CF +ANA LE+ G   ++W +
Sbjct:   73 EPGWQAQLGAEARKPYWRSLDAFLRQEAKAGKQIFPPKSMVFSALELCPFDKVKVVILGQDPYHGPGQAHGLAFSVQEGIAIPPSLRNMYKEAMTDVKISKPTTGSLVPWAKQGVLLLNTVLTVRKGEANSHKDRGWEKFTDAIIRSLNKNKNGLVFMLWGKHAQKVAAPVDRSKHLVITSSHPSPLGASKTKEPFIGSKCFSRANAYLEKKGKEPINWKI 293
[Close]
BLAST of mRNA_P-littoralis_Contig173.61.1 vs. uniprot
Match: T0QHR0_SAPDV (Uracil-DNA glycosylase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QHR0_SAPDV)

HSP 1 Score: 263 bits (672), Expect = 8.810e-78
Identity = 129/237 (54.43%), Postives = 162/237 (68.35%), Query Frame = 3 
Query:  336 TKTAGPSP------IKEQGWAAALSGETSKPYFGRLQTFLDREYSTK-VIYPPREKLFHALEACPFGDVKVVILGQDPYHQPGQAHGLAFSVMKGVPQPPSLRNMVKEAVSCCGISPTKSGTLDSWCRQGVLLLNTVLSVERSKAHSHKNQGWETFTDAVVRELNKGNRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANAALEELGHGSVDWNV 1025
            T +A P+P      + E  W   L+ E  K YF  L  FL RE   K +I+PP+ ++F AL  CPF  +KVVILGQDPYH PGQAHGL FSV K VP PPSL+N+ KEA++   I     G L SWC QGVLLLNTVL+V  ++A+SHK QGWETFTD ++R+++K    +VFLLWGKP+Q+K ALID SKH ++T +HPSPL AT+  +PFIGS CF K NA L + G   +DW V
Sbjct:   50 TASAAPAPATVGDLLTEPTWREMLAPEFKKSYFKSLDAFLVREQQKKAMIFPPKSEIFTALNLCPFDKIKVVILGQDPYHGPGQAHGLCFSVQKPVPPPPSLKNIYKEAIADVNIPKPSHGCLLSWCDQGVLLLNTVLTVRATEANSHKKQGWETFTDVIMRKISKETSGVVFLLWGKPAQEKSALIDRSKHCILTSSHPSPLGATKTAEPFIGSRCFSKTNAYLVQQGKDPIDWTV 286
[Close]
BLAST of mRNA_P-littoralis_Contig173.61.1 vs. uniprot
Match: A0A1W0AAY8_9STRA (Uracil-DNA glycosylase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAY8_9STRA)

HSP 1 Score: 259 bits (663), Expect = 1.120e-76
Identity = 126/232 (54.31%), Postives = 157/232 (67.67%), Query Frame = 3 
Query:  333 DTKTAGPSPIKEQGWAAALSGETSKPYFGRLQTFLDREYSTKV-IYPPREKLFHALEACPFGDVKVVILGQDPYHQPGQAHGLAFSVMKGVPQPPSLRNMVKEAVSCCGISPTKSGTLDSWCRQGVLLLNTVLSVERSKAHSHKNQGWETFTDAVVRELNKGNRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANAALEELGHGSVDWNV 1025
            DTK      + E  W   L+ E  K YF  L TFL +E   K  IYPP++++F AL  CPF  VKVVILGQDPYH PGQAHGL FSV K VP PPSLRN+ KEA+S   I     G L SWC QGVL+LNTVL+V  ++ +SHK QGWE FTD ++R++++ +  +VFLLWGKP+Q+K  LID SKH++ T +HPSPL AT+  +PFIGS CF K N  L + G   +DW V
Sbjct:   41 DTKATVAHLLTEPKWREVLAQEFKKSYFKNLDTFLVQEQKKKAKIYPPKDEIFTALNLCPFDKVKVVILGQDPYHGPGQAHGLCFSVQKPVPPPPSLRNIYKEAMSDVKIPKPSHGCLLSWCHQGVLMLNTVLTVRAAEPNSHKKQGWENFTDVIIRKISQDSEGVVFLLWGKPAQEKIPLIDRSKHKIFTSSHPSPLGATKTAEPFIGSRCFSKTNEYLVQQGKEPIDWTV 272
[Close]
BLAST of mRNA_P-littoralis_Contig173.61.1 vs. uniprot
Match: A0A485L0Q6_9STRA (Uracil-DNA glycosylase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0Q6_9STRA)

HSP 1 Score: 258 bits (659), Expect = 5.840e-76
Identity = 137/264 (51.89%), Postives = 175/264 (66.29%), Query Frame = 3 
Query:  291 AGAGKGVA---VAKRQK-------DTKTAGPSP----------IKEQGWAAALSGETSKPYFGRLQTFLDREYSTKV-IYPPREKLFHALEACPFGDVKVVILGQDPYHQPGQAHGLAFSVMKGVPQPPSLRNMVKEAVSCCGISPTKSGTLDSWCRQGVLLLNTVLSVERSKAHSHKNQGWETFTDAVVRELNKGNRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANAALEELGHGSVDW 1019
            AGA KG A   VAK+ K       +T+ A PSP          + E  W   L+ E  K YF +L+ FL RE   K  I+PP+ ++F AL  CPF  +KVVI+GQDPYH PGQAHGL FSV  GVP PPSL+N+ KEA +  GI     G+L +WC QGVL+LNTVL+V  S+A+SHK QGWETFTDAV+R ++     +VFLLWGKP+Q+K  LI  SKH ++T +HPSPL AT+  +PFIGS+CF KANA L + G  +++W
Sbjct:   18 AGASKGDAPSPVAKKTKAEDAKKAETEEAEPSPAVTSSSLAMLLTEPKWKELLAPEFKKNYFKQLEAFLVREQKKKATIFPPKAEIFAALNLCPFEKIKVVIIGQDPYHGPGQAHGLCFSVRHGVPPPPSLKNIYKEACADVGIVKPTHGSLLAWCDQGVLMLNTVLTVRASEANSHKKQGWETFTDAVIRLVSDQAEGVVFLLWGKPAQEKSTLISRSKHCILTSSHPSPLGATKTAEPFIGSKCFSKANAYLVQHGKDAIEW 281
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig173.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFW4_ECTSI1.060e-14186.19Uracil-DNA glycosylase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A836CBN7_9STRA3.080e-8759.82Uracil-DNA glycosylase n=1 Tax=Tribonema minus Tax... [more]
A0A024T8C9_9STRA8.580e-8258.22Uracil-DNA glycosylase n=1 Tax=Aphanomyces invadan... [more]
A0A6G0XWG6_9STRA4.430e-7957.85Uracil-DNA glycosylase n=1 Tax=Aphanomyces euteich... [more]
A0A7S2RYA9_9STRA6.180e-7957.53Uracil-DNA glycosylase n=1 Tax=Rhizochromulina mar... [more]
W4H8I4_9STRA6.170e-7856.50Uracil-DNA glycosylase n=9 Tax=Aphanomyces astaci ... [more]
A0A2R5GJU8_9STRA7.660e-7857.01Uracil-DNA glycosylase n=1 Tax=Hondaea fermentalgi... [more]
T0QHR0_SAPDV8.810e-7854.43Uracil-DNA glycosylase n=1 Tax=Saprolegnia diclina... [more]
A0A1W0AAY8_9STRA1.120e-7654.31Uracil-DNA glycosylase n=1 Tax=Thraustotheca clava... [more]
A0A485L0Q6_9STRA5.840e-7651.89Uracil-DNA glycosylase n=1 Tax=Aphanomyces stellat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig173contigP-littoralis_Contig173:215901..222644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFW4
Preferred nameUNG1
PFAMsUDG
Model size2577
Max annot lvl2759|Eukaryota
KEGG rclassRC00040,RC00367
KEGG koko:K01946,ko:K03648,ko:K11400
KEGG ReactionR00742
KEGG Pathwayko00061,ko00254,ko00620,ko00640,ko01100,ko01110,ko03410,ko04152,ko04910,ko04920,ko04922,ko04931,ko05340,map00061,map00254,map00620,map00640,map01100,map01110,map03410,map04152,map04910,map04920,map04922,map04931,map05340
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002562,GO:0002566,GO:0002637,GO:0002639,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002712,GO:0002714,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002889,GO:0002891,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0004844,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006304,GO:0006310,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009394,GO:0009893,GO:0009987,GO:0010604,GO:0010941,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016787,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042981,GO:0043021,GO:0043024,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045008,GO:0045191,GO:0045830,GO:0045911,GO:0045935,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0050896,GO:0051052,GO:0051054,GO:0051094,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051716,GO:0055086,GO:0060255,GO:0060548,GO:0065007,GO:0070013,GO:0071704,GO:0072527,GO:0072529,GO:0080090,GO:0090304,GO:0097159,GO:0097506,GO:0097510,GO:0140097,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:2000026
Exons6
Evalue7.73e-151
EggNOG OGsCOG0692@1|root,KOG2994@2759|Eukaryota
Ec32 ortholog descriptionUracil-DNA glycosylase-like
Ec32 orthologEc-05_005280.1
EC2.1.3.15,3.2.2.27,6.3.4.14,6.4.1.2
Descriptionbase-excision repair, AP site formation via deaminated base removal
Cds size918
COG categoryL
BRITEko00000,ko00001,ko01000,ko03036,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig173.61.1prot_P-littoralis_Contig173.61.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig173 216014..221098 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789834.1760023-UTR-P-littoralis_Contig173:215900..2160131680789834.1760023-UTR-P-littoralis_Contig173:215900..216013Pylaiella littoralis U1_48UTRP-littoralis_Contig173 215901..216013 +
1680789834.2546875-UTR-P-littoralis_Contig173:221098..2226441680789834.2546875-UTR-P-littoralis_Contig173:221098..222644Pylaiella littoralis U1_48UTRP-littoralis_Contig173 221099..222644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789834.1876593-CDS-P-littoralis_Contig173:216013..2162481680789834.1876593-CDS-P-littoralis_Contig173:216013..216248Pylaiella littoralis U1_48CDSP-littoralis_Contig173 216014..216248 +
1680789834.198861-CDS-P-littoralis_Contig173:218176..2183521680789834.198861-CDS-P-littoralis_Contig173:218176..218352Pylaiella littoralis U1_48CDSP-littoralis_Contig173 218177..218352 +
1680789834.2107263-CDS-P-littoralis_Contig173:219020..2191401680789834.2107263-CDS-P-littoralis_Contig173:219020..219140Pylaiella littoralis U1_48CDSP-littoralis_Contig173 219021..219140 +
1680789834.2202084-CDS-P-littoralis_Contig173:219777..2199021680789834.2202084-CDS-P-littoralis_Contig173:219777..219902Pylaiella littoralis U1_48CDSP-littoralis_Contig173 219778..219902 +
1680789834.230661-CDS-P-littoralis_Contig173:220159..2202471680789834.230661-CDS-P-littoralis_Contig173:220159..220247Pylaiella littoralis U1_48CDSP-littoralis_Contig173 220160..220247 +
1680789834.2398853-CDS-P-littoralis_Contig173:220924..2210981680789834.2398853-CDS-P-littoralis_Contig173:220924..221098Pylaiella littoralis U1_48CDSP-littoralis_Contig173 220925..221098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig173.61.1

>prot_P-littoralis_Contig173.61.1 ID=prot_P-littoralis_Contig173.61.1|Name=mRNA_P-littoralis_Contig173.61.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=306bp
MPQSSLTSFFAPKANLPSTTSSSSSSSSSKNMDGATTAACSSVGSKRASP
DSGALQEMAAGAGKGVAVAKRQKDTKTAGPSPIKEQGWAAALSGETSKPY
FGRLQTFLDREYSTKVIYPPREKLFHALEACPFGDVKVVILGQDPYHQPG
QAHGLAFSVMKGVPQPPSLRNMVKEAVSCCGISPTKSGTLDSWCRQGVLL
LNTVLSVERSKAHSHKNQGWETFTDAVVRELNKGNRRLVFLLWGKPSQKK
GALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANAALEELGHGSV
DWNVL*
back to top

mRNA from alignment at P-littoralis_Contig173:215901..222644+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig173.61.1 ID=mRNA_P-littoralis_Contig173.61.1|Name=mRNA_P-littoralis_Contig173.61.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6744bp|location=Sequence derived from alignment at P-littoralis_Contig173:215901..222644+ (Pylaiella littoralis U1_48)
GAGTCGTCTCTGCAAATTGGTTCAGCTGGCTGGTTGGGACTCTTAGCGGT
GGCTCAACAGGGTGTAAGAGGCCTGCGAATTCGTTTTGCTGTTTCATCAA
CTTTGTTCCGACCATGCCCCAATCTTCATTGACCAGTTTCTTCGCTCCGA
AAGCTAATCTACCCTCCACCACGTCGTCATCATCATCATCGTCATCGTCG
AAGAACATGGACGGAGCAACAACAGCAGCGTGCAGCAGCGTCGGGTCGAA
GCGCGCATCGCCCGACAGCGGTGCCTTGCAAGAGATGGCAGCTGGGGCGG
GCAAGGGGGTGGCGGTGGCCAAGCGCCAGAAAGATACCAAAACTGCAGGT
ATGTGGTACATACTACCTCGCTGTAGAGGTGGTTGTGTTGTGTGCTACAA
GCAGTAGGTAAAATACCTTCACGAGAAGCGGAGAGAAGGAACACGCGGCT
CTTGCTCTTGATCTGCCATGATCTTATACGAAGTACAGCAGTGTCAAACA
GCCAGCTCGTGCGAGAGAGAACGGGGCAGCAGCGCAAGAGAGGCGGAAAG
ATGCGTACCCGACAGCTCTGTGGCGTGCATGATGCTCCTTTTTTGGGGGA
GGGGGTGTCTACGATGTAGGAAGCTCTCGAGAGCTGCTCTGCTGCAGCAT
GCTGTGTGTGCCTTTACACCTTCGGGACCTACTCCTACTTCTGTTGTTAT
GTAGACTCCGCAACCACTCGCGAGAACACCAGCGAGAGTTTGATAACCAC
GCCGCTTCACTTTCTGCTCTACTGCTGTAGGATACGAGGAGATATCCGCC
GGACCCATCGTATCCTTTTGACTTTTGAGCAGCACAGCCGCCGCCGGTGC
TTTGCGCGTGAAGAAAACGCTGCTGGGAGCGTGTGCTCGTGTACACCCGT
CGTTCACCCAGCCGAACCGTTCGCAATTCGCACCAAATAACACGCGTATC
GTATACCTGGTACATAAATTGGCGTTGTATACCACCCCCCATATCAAAAA
GTGTGTGCGTGTGCGTGTGTATGTGTACAATATGTGTATCTGTGTGTGAT
GTCATCCCATCTATTCTGGGCGCCAGCCTGCACCTTAGTGCTCTGTGTAA
TATTGGCGCACCAGCTAGGGTCGCACTGGAGGAAGGTCAACACAAGCGTA
TTTTTTTGCTTACCTTCCTTCTGCTGCGATGTGTGTGTGTGTTTGTGTGT
GTCTGTGTGTTTTCACATCATTTATTCTGGGCACCAGTTTACTCCTTTCG
GTACGAAGTGGATGCATCAGCCGGGGTCACACAGAACGGTGCTTGCCTTT
TTTTTTACGCGAGAAGGGTTCTCCAGTCCCTACTTTTGTCTTTTTTCAAG
TCGGATTTTGCACAGTATACTCACGGAGTGTGAGGGCGGATTATCGGATT
TTCAACGATCGATGTGCCCGATTCCTATCCCTGCGCAACTAAAAGGGGTG
ACTTCTGCGCTGTAGAACCCGTACGTCACGAATTTTTGGTTTATGATGCA
GCTCTCGACGAGATCTGTCTACCCACACCCATTTGTCGGCGCTGATACTG
CTGTGAGGATATGAAACACGCATCATATTACACACACTTTTTTGGTGAGG
ATGAGAAGTTGCCCCGGGGGTGTGCTATCTTCCGCAGCATTTCCAGCGGC
AGCGGAGGCGGCGGCGCTGTGATCTAGCGAGAGACAAGAAGACATGCGAC
CTTTCTATGAAAACTGAATGTAGCACTGCTCACGCGGCAGCACCGGTGTT
TCACTTGAAGTAATAAGTAGCACTACAGACTGTAACAACGATCGATGCTT
GCGTTGTCTTAATAACCAGGCACTGGACAAGTAGACAATGATTGATCGCG
GCGATACACATCATACGTCATGTCATAACAACATTAGCTGGAGGGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAAAGAGGGAGATACATAATCACACAGT
CACACAAGAACACGTTGATGGTGTAGTCGTGTGTCCACTTCAACGCACAC
AACGTACAAGTAGAAAGATGATGATACCTTCTTCGGTCTTCTGTATACCC
TTCCTTTTACTTTTTGTGTGTTTTTTCGGATCTTCCCAGGGCTCGGCACT
TTTGTGACAACGGGTTAAACTACGGTGGTTAGCTAAATGTGAAGAATCAA
CAACATCAACAGAGAGGATCACACATACACACGGACCGCACTTCTTACAA
CCATGTTTTCACCGCGTGCGTGTCGTGTCGTGTTGTTTCTTGTGCTCACG
TTGCTCTTGGCTGCTCCCTATCTCAGGCCCGTCGCCCATCAAGGAGCAAG
GCTGGGCTGCGGCCCTTTCCGGCGAGACTTCCAAGCCGTACTTCGGGCGG
CTGCAGACTTTCCTCGACCGAGAGTACTCGACGAAGGTCATCTACCCACC
GAGGGAGAAGCTCTTCCATGCCTTGGAGGCGTGCCCGTTCGGCGACGTTA
AGGTGCGAACGGTCGAATGATGCACTCCGGCGCCTACAGTACACAGACAG
GTGTTGTGGTTTCGACCGGCGTCCATCTTGTGACGACAGGGCTTACCATA
CACCCGTACACAGACTACGAACCCCCCCCTTCCCGCAAGGCTCTGTCTCG
GGGTGGTGGTACTTTTGCGAGGTGGGCGCTGTCCTTTTTTCTCTGATGAC
ACCTACCGGTACCTACACAGACAAGTGTTGTGTGTTTTGGTTCCGAGCGG
CCTCCATCTTGTGTGGATCAGGGCTTACCCTACACCCGTACACAGGCTAC
GAACCCCCCCCCCCTCCACTCCCCTAAGCCCCCGTCTCGATGGTACCTTT
GCTAGGTGAGTGCTTTTATTTTCTCTCCATAAAAAAACGGGTACACAGCA
CTACGGGGGTAACAGAAAGTGGGGCGGTCCAGCTGGCGGAACTTGGCGAC
TGCTGCTGCTGCTCTTTTACCCCACACAACGATTTAAAAACCAGCAGTAC
TCTTTTTAAAATTTTCGAAATTTTGTGCTGCTTCGCCCTCTGTCCCCTTC
GTTGCGATGTCGGGGATGATTTCGCCTTTTTTCGACCTCTGCGGACGGCG
GTCGGCGGCCGCCGGGGGATTGCGGACTGCGGTGGATCGCGGATCGCGGA
TGACGACACGGCTCCGAAAGGTCGTTATCCTAGGGCAGGACCCTTACCAC
CAGCCCGGGCAGGCGCACGGCCTCGCGTTCTCCGTCATGAAGGGCGTCCC
GCAGCCGCCGAGCCTGCGAAATATGGTCAAGGAAGCCGTGGTGAGTTTTT
GTCGTATCATAGCCGACGACCGAGCAGGACCGTCTCGATTTAAACAGCAC
AGCGCAGACTGCCGCCTGATTTTGTCGCTTCCTCTTGAAGTGAAGAGCAC
CGCGTGGTAAATTGTTTGTTTATGGAGCCTCCACCCGTCCGGTCCGGTGA
AGAATATGCTGTCACGACGGAGCTAAACTGCAGATGCTCTTGCTGTTGCT
GTTGCTGTTGCTGCTGTTGCTGCTGCTGCTGCTGCATTTTACCCGTACCC
GATCAACCGTACGATGGATGCATGTGTGTGTACGGGAGAGCACATGGATG
TGCCTCGTCGAAGTACTTGGCGCAACTTATTTTTCGACTTCCTCGGGGTG
CACATTCTTTTTCCACATTGATACCGCCCCCAGAGAATCGAAATCGGGAC
CAACCGAATCAATGCACCGAGCCTCTTGCAGCAGCATCCCGGTCGTTCTA
CAGTGTGGGGGGTGCTGGACAGCCGTGTTGCCTCTCTGACGCACATCAAC
CCTTCCCACTTTGTAGTGTTCCTAGTGTTTTTTTTCCGATGTGAAAAATG
TCGAGGATTCGAGGTAGAAAGGCATACCAGGTATATATTTTTACGCTTAC
GCCTGCACTTTCGTTTTTTCTTTTCAGAGCTGCTGCGGCATCTCACCCAC
CAAATCGGGAACGTTGGACAGCTGGTGCCGCCAGGGGGTGCTGCTGCTCA
ACACGGTTCTGAGCGTTGAGCGGTCCAAGGCACATTCACACAAGAACCAA
GGGTGAGAGCTGCGCTCGGCAGTACGCACGCTTTGGGGGGGCACTGGTAT
CCAAGCTGGTGGCCCGGATGTGCAAATGCCTTTCATCATTGGATCGATCG
GGGGCCTTCCTTGCTTACAAGGGCACGGAAAAACAGTCCCGACGCGATAG
TTCTGAAGCTTGGCAAGCAGTCAAACTCAGGGATTCTCTATGAATGATAC
CCCCCCCCTCTCCTCATCAACCCCTGCCGCCGTCGCCCCCGTCGTCTACG
GCGTCTTAGGTGGGAAACCTTCACGGATGCGGTGGTTCGGGAGCTAAACA
AGGGAAATCGGCGGTTGGTTTTCCTTTTGTGGGGCAAACCCTCTCAGGTG
TGTGTATATGTATGTGCGTGTGCGTTGTTTGTGAACCGCAGGCCAGTTTT
TTAGGTAGTTTCACCCTTTTTTGACAGCGGCGGCAGGATTAGTGGAGGTT
TTGTCTTTTCTTTTTTCCTGGGAAAGAAAAAAAAACTTCATCAGAGTTTG
TCAAAGCAACCGTACAGAGCAAGGTGGCACGCAGTTTCCTGATCGGTTAA
TACCCCTGAGGCGAAATCATAAATCGATCCAAAGGAAGTCCCTTGAATGA
CAGTTGGTGTCATCCAAGATCGATGGGGGTGGGCGGAATCAGGGGCACGG
ATGAATGCCGTGCTCTGGAGGGTTACGTGGACTGCAGGATTGTCTCGACT
TAAAATCAGGAAACAGACCTGGAAGATGCCTTACGGAGATGATGCTACAT
ACCTGGCACATGCTTCTCTGGGGCGGGCCCTTCAAATAACTACACTGCTT
TGCGGCGCTGAGGTTTCTTCTGGTTTTCCTCCCGGAACAAACTACGCCCC
TTGTGTATCAACATGCCGATAGTCACCTCGCTCGGCCTTTTACACCGCTT
TTGCCGTTTCTTTGTATCACCTTCCATCGCTGATCGACTGGACCCCCCCC
CCTCCCCCCCGATCCCGACCCCAAACCTTGCCCCTCCCCGATCTCCCTCC
CCGTCGTGATTCGATCGTTGATAGAAAAAAGGCGCCCTAATAGACTCATC
GAAGCACCGGGTGATCACCTGCGCCCACCCTTCTCCTCTGTCGGCAACTC
GGAAGCCGGACCCGTTCATCGGCTCCGAGTGCTTCAAGAAGGCAAATGCT
GCCCTTGAAGAGCTGGGGCACGGGAGCGTAGACTGGAACGTGCTGTAGCG
GAGGCGGCGAGCCGGGGGGGGGGTGGCTGTTTTCGGAGTTCGAAGCGGCT
TCTGTTAGCTGCGGCCAGGATCATCATGCGGAGGCCCATTGGCGGCTTGG
CGTATGTAAGAATAAGTGGCCGAGCTTTTTTTTTGTTAAGAATTCGACTG
GTTTGGTCTATGAAGTAGGTCGTCAGAAAAATACCGAATATATTTTCGTC
GAACTGTTGTTGTTTCGCACGCGTTTTTTTCTGTTTTTGAAAGCTGCTGT
CGGTAGACTGACGGTGTCTGGTGTATTCGTCGGTAGGAAGGGACACTCCC
TATGATGTCCGCCTTGACCAAGAGTGTCGAGGTAGCTTGTGTCGTACGAT
GTACTGTTTCGCCTTAACGTCAAGCTCTACTGATGATGAGGCGCATGTTA
TCACAGTAGGTAGGCGGGAGCAAGCGACACTCGTTCCGTTTCGTTTTATC
CGCTTTGCCAAACAACACAAACTAAGTACCAAAGATTATCGCCGCTTGTG
TCGTACGGCTGCGAGTGTTGGGTAAAAACGCAACGGCGATTCTGCTTTCT
TAAGGTCGACGAGGCTCCTCAACGAACCAAGTGTATAAAACAGACTGGAG
TAAACTTTGGGGTGGATACTCGATTTTTTGTACTGTACTGACATTTGATG
TCCGTAGTTTTTCTAGTTGTTGCCAACGTTACGCGCCGCTGCTTTCTGAT
TGGCCGAAAATCCTTGGGTGGTGAGGGACGTCAGCCAGGGTCGACGCGTC
ACATTTTGTTGGAGCAGGGTTCTTTCTTTTTCTCTATCTCTCTCTCTATC
ACCCTCTTTGTCTCTCTCTGTATCATGTTTGTGCCTTGCTCGAAGGGCTG
ATGTTGTGTCTCCAACCGGTGGGCACACCTATCATTCGTTTTTATTTCTT
CCCGCGGCGAAAGCTCTCCGAGAACGTGCCGATTTGTATATTATCGGTAA
GAATTGAGTCCAGCTTCGAAAATCGGTGCTGGTGGGGGGAGGGGGAGGCG
AAGGGGCGAAGCGACACGGAGGATACGGTATTAAGATAGCTCCTGGTGAT
GGGAAATGATTGGTTGCCACGTTAAAAAAGTGATCACCCCAATCCCTCAC
CTACCGGTACCTTCCCACTTTCAAGTGGTGGTACTTCGAAGTATTTCTCT
TTGCACGTCGGGCATGTCGGGCGTCGACCTGTTCGGGAGACCGAAGAGAG
GGGCACGGTGCAAGTCCTCGCTCTAGTCATTTGTCCTTGCCAAAAATGCG
CGTTTTTATTTGTTGCTCTCCTCATCATTTCTTCGTACTGTACCTGGTAT
CTTGAATGAGAAATATTGCGGAATTTCGCTCTTAAACTTTTTTCTATTTT
TCTGCTGTCTCTTTTCCTCTTAATTTTTGTGCATCCCTGAATCAGTAAGA
ATGCGGGAGTGGGCTCTCGAGTTCTTAATAGTCTGTTGCGAGGGGAGATG
CGGGGGGGGCACAACAAGGAGAAGAGCGGTCCCTCCATATACCCACGTAC
TCGATTAATGCAAGCACGTACACGGTCATTTTGGAGGTCTTTGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig173:215901..222644+

>mRNA_P-littoralis_Contig173.61.1 ID=mRNA_P-littoralis_Contig173.61.1|Name=mRNA_P-littoralis_Contig173.61.1|organism=Pylaiella littoralis U1_48|type=CDS|length=918bp|location=Sequence derived from alignment at P-littoralis_Contig173:215901..222644+ (Pylaiella littoralis U1_48)
ATGCCCCAATCTTCATTGACCAGTTTCTTCGCTCCGAAAGCTAATCTACC
CTCCACCACGTCGTCATCATCATCATCGTCATCGTCGAAGAACATGGACG
GAGCAACAACAGCAGCGTGCAGCAGCGTCGGGTCGAAGCGCGCATCGCCC
GACAGCGGTGCCTTGCAAGAGATGGCAGCTGGGGCGGGCAAGGGGGTGGC
GGTGGCCAAGCGCCAGAAAGATACCAAAACTGCAGGCCCGTCGCCCATCA
AGGAGCAAGGCTGGGCTGCGGCCCTTTCCGGCGAGACTTCCAAGCCGTAC
TTCGGGCGGCTGCAGACTTTCCTCGACCGAGAGTACTCGACGAAGGTCAT
CTACCCACCGAGGGAGAAGCTCTTCCATGCCTTGGAGGCGTGCCCGTTCG
GCGACGTTAAGGTCGTTATCCTAGGGCAGGACCCTTACCACCAGCCCGGG
CAGGCGCACGGCCTCGCGTTCTCCGTCATGAAGGGCGTCCCGCAGCCGCC
GAGCCTGCGAAATATGGTCAAGGAAGCCGTGAGCTGCTGCGGCATCTCAC
CCACCAAATCGGGAACGTTGGACAGCTGGTGCCGCCAGGGGGTGCTGCTG
CTCAACACGGTTCTGAGCGTTGAGCGGTCCAAGGCACATTCACACAAGAA
CCAAGGGTGGGAAACCTTCACGGATGCGGTGGTTCGGGAGCTAAACAAGG
GAAATCGGCGGTTGGTTTTCCTTTTGTGGGGCAAACCCTCTCAGAAAAAA
GGCGCCCTAATAGACTCATCGAAGCACCGGGTGATCACCTGCGCCCACCC
TTCTCCTCTGTCGGCAACTCGGAAGCCGGACCCGTTCATCGGCTCCGAGT
GCTTCAAGAAGGCAAATGCTGCCCTTGAAGAGCTGGGGCACGGGAGCGTA
GACTGGAACGTGCTGTAG
back to top