mRNA_P-littoralis_Contig173.55.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig173.55.1
Unique NamemRNA_P-littoralis_Contig173.55.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig173.55.1 vs. uniprot
Match: A0A6H5JT46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT46_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 8.980e-18
Identity = 91/261 (34.87%), Postives = 106/261 (40.61%), Query Frame = 1 
Query:   25 MHAQPMMAA---GGSWMAYQDREGRPCWHNTATNEWTYNLAGSGGGGGML----------AMMGYGYPATSGVYGWPTTPAGVAA------PSQ--GSFSYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESPRTMPDPNGPDIGVMLGPGPASGVMPYA-SHDARGSIPLPFDLDSIMPAWFAGAA 741
            M A PMM A   GGSWMAY+DREGRPCWHNTATNEWTY+L+                   A+        +G+Y WPT PA  A       P Q  G + YG                                    XXXXXXXXXXXXXX                                                           DPNGP+ GV+LGPGP  G MPYA SH ARGS+P+PFD  +++P W  G+A
Sbjct:    1 MQAHPMMTAAVQGGSWMAYRDREGRPCWHNTATNEWTYDLSNGXXXXXXXXXXXXXXXXPAVATAAATVPAGMYAWPTAPAPAAVMVPTAVPQQLAGPYFYGADPGTVVMAPAIMMPAAGPYDAVAAHQQQQMLYMQQXXXXXXXXXXXXXXPGLMMAPAYQEQQEFPQPQYGVI------------------------------------DPNGPEAGVLLGPGPPDGFMPYAKSHKARGSVPVPFDPTTMLPGWMGGSA 225
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BLAST of mRNA_P-littoralis_Contig173.55.1 vs. uniprot
Match: D8LFW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW7_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 3.410e-11
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:  595 DPNGPDIGVMLGPGPASGVMPYA-SHDARGSIPLPFDLDSIMPAWFAGAA 741
            +PNGPD GV+LGPGP  GVMPY+ SH ARGS+PLPFD  +++PAW  G+A
Sbjct:   28 NPNGPDAGVLLGPGPPDGVMPYSKSHKARGSVPLPFDPTTMLPAWMGGSA 77
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig173.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT46_9PHAE8.980e-1834.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFW7_ECTSI3.410e-1166.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig173contigP-littoralis_Contig173:184355..187351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1371
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_005230.1
Cds size1347
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789833.9497929-UTR-P-littoralis_Contig173:184354..1843781680789833.9497929-UTR-P-littoralis_Contig173:184354..184378Pylaiella littoralis U1_48UTRP-littoralis_Contig173 184355..184378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789833.9613187-CDS-P-littoralis_Contig173:184378..1844521680789833.9613187-CDS-P-littoralis_Contig173:184378..184452Pylaiella littoralis U1_48CDSP-littoralis_Contig173 184379..184452 +
1680789833.9726508-CDS-P-littoralis_Contig173:185781..1858491680789833.9726508-CDS-P-littoralis_Contig173:185781..185849Pylaiella littoralis U1_48CDSP-littoralis_Contig173 185782..185849 +
1680789833.988139-CDS-P-littoralis_Contig173:185936..1867011680789833.988139-CDS-P-littoralis_Contig173:185936..186701Pylaiella littoralis U1_48CDSP-littoralis_Contig173 185937..186701 +
1680789834.001249-CDS-P-littoralis_Contig173:186911..1873511680789834.001249-CDS-P-littoralis_Contig173:186911..187351Pylaiella littoralis U1_48CDSP-littoralis_Contig173 186912..187351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig173.55.1prot_P-littoralis_Contig173.55.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig173 184379..187351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig173.55.1

>prot_P-littoralis_Contig173.55.1 ID=prot_P-littoralis_Contig173.55.1|Name=mRNA_P-littoralis_Contig173.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=449bp
MHAQPMMAAGGSWMAYQDREGRPCWHNTATNEWTYNLAGSGGGGGMLAMM
GYGYPATSGVYGWPTTPAGVAAPSQGSFSYGGGGGGAFMTPGGVMMVPAA
TSPYGTTAGAGAAAAFVDPVTGQQMMYVQQQQQQQQQQQLMQPMAQGMMM
MTPAAYQQLQQQQYAQHVFGAAGGGGGGGGGGGESPRTMPDPNGPDIGVM
LGPGPASGVMPYASHDARGSIPLPFDLDSIMPAWFAGAAAVGGAGAGGDG
ESGGVSGFFGRMMPGEAKKGKKSKNKKGEKGKDKGEGKGKDKGKGEGEDE
DKDESTDGNGKSNKNDDDDDDDDDDDDDDDDDDDDDGSEVEKEVLAASAA
AAAAAGVAAAANGPSYGAAASRSSSYGQYPAWDGFAKRGREPGGGSVGAN
GANGATGEKGGGGAGGGQGAWSHFYDRNGYKCWRNTVTGEKRSVDPYR*
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mRNA from alignment at P-littoralis_Contig173:184355..187351+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig173.55.1 ID=mRNA_P-littoralis_Contig173.55.1|Name=mRNA_P-littoralis_Contig173.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2997bp|location=Sequence derived from alignment at P-littoralis_Contig173:184355..187351+ (Pylaiella littoralis U1_48)
AGGAACCAACTCGAGGGGGAGAAGATGCACGCACAGCCGATGATGGCCGC
TGGCGGGTCGTGGATGGCGTACCAGGATCGCGAGGGCCGCCCGTGCTGGT
GAGAGCGAAACTGCAGAGCGGGCTATATTCCCAACATGTCTGCAACAAAA
GAAAGGAGGCGTGTGTGTTGTCGTCGTCGTTGATGTTCCTATTCTTCCTG
TTCCTTTTCCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTCGATTCTCACATTCGCTCACCAATTGACCTAGCCTCCTGCGG
TGGCCACAAACCAGGCACAACGCATCATGCTAGTAGGAAAAAAAGAAAAG
TCTGTGCAGCGGTCTCACGGAAGGGAGATAGGGTTGGTTGGTTGGCAACC
AAGTCGGCTCTGTTGTTGCAAGAAGCAACAGCGGCAACTCACCCCCCTTT
TTGTCCTTGCATGGCTTCATTCTATTCTCTCGGCCCCTCGACACGGAAAA
CATGAGTTGTGTTTCCTTCATTCACTGTTGTAGTGGTGACTTCCATTCGA
GACAGCTCTAACCTTAGCAGTTAGTCACGCCTTTTCTCCTTTGGGCCGGG
GCGGTGAGTGACAAAGCCTGGCACGAACAACACTATGTATAGCGCCAAAC
TTACTTTGCAAATACCGCGGGTGGCGCAAGATAACACCCCCCCCCAATTG
GACTGATTTCGAAAGATTGATCACTGATTATATCCACAGCAAGGAGGACG
ACTAATAATAATGAATGGTGGCGTTTCGAAAATATATCGTGGAGAGCTTT
TCGTAAAAACATATCGTTCGGTATTTGCGGCCCCCTTCGTTACGGAGTGA
TCGATCAATCATTGATTCGACATCGGTTCAGGGTGTGCGCTATCTTCCGT
CATGTCACCTACCGCACCGCACTCCAGGACGAGTCGAGTCGACAAGCTTA
CGTCGTTTCATGCGATAATTGCAGGAAGCAAAGCAAAGCAGCAATTCACT
CCTTTTCTCTCTCCTCAGAACCTACTACTGCATGAAAATGTGACAGACGG
CCTGGCACGAATAAGCAACACCCCAACGCCACGTAACGTACAGCAGTAGC
ACTCCGGGACGAGGTCGACATGCTCACGTACGTCACGCGGCGTGATACCG
CAGGGGCCCTCACTCAGAGCCGCGTTCGACAACAACAGCCACGGCAACGC
GGCACCGAACAAGAGTAGTATCAGCAGCTACTTTTGCTGCAAGAGCCTCT
GTCCCTTGCTTTTTCCCATTCACTGGCCCCCCCGACACGTACCAGAGGTC
CTCCTCTGCTGTTAATACCCCCCCCCGATCCCCACCCTACCTCTGCATGG
TCATGAGTACCCGCAACCCCGCCGCTGTGCCTCCCCTGCCCCTGCCACGT
CGAACAAATGCCGAAAACACAAACCAGGCACAACACAGCCACTAACGAGT
GGACCTACAACCTGGCGGGCAGTGGTGGCGGTGGCGGTATGCTGGGTTTT
GACAGCAACGGCCAGCCACTGATGCAGCAGCAGCAGCAGCAGCAGCAGCA
GTATCAGCAGTATCAGCAGCAGCTGGCGCAAGCGATGATGGGCTACGGCT
ACCCCGCGACGAGCGGAGTATACGGCTGGCCCACAACACCAGCCGGAGTA
GCGGCGCCATCCCAAGGGTCTTTCTCTTACGGCGGGGGCGGTGGCGGAGC
CTTCATGACTCCGGGGGGGGTCATGATGGTGCCCGCAGCGACAAGTCCTT
ACGGCACTACTGCTGGTGCTGGTGCTGCTGCTGCTTTTGTTGATCCAGTA
ACGGGGCAGCAAATGATGTACGTGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGTTGATGCAGCCGATGGCACAGGGGATGATGATGATGACGCCGG
CGGCATACCAGCAGCTGCAGCAGCAGCAGTACGCACAGCACGTGTTCGGA
GCTGCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAATCCCCCCG
CACGATGCCCGACCCAAACGGACCGGACATCGGGGTGATGCTTGGCCCTG
GGCCCGCGAGCGGCGTCATGCCGTACGCGAGCCACGATGCTCGCGGGTCG
ATCCCGCTGCCGTTCGACCTGGACTCGATTATGCCGGCGTGGTTTGCGGG
AGCGGCGGCGGTGGGTGGCGCCGGCGCCGGCGGCGATGGCGAATCGGGGG
GGGTTTCCGGGTTTTTCGGCCGGATGATGCCTGGCGAAGCGAAAAAGGGC
AAGAAATCGAAGAACAAAAAAGGCGAGAAAGGTAAGGACAAGGGCGAGGG
AAAAGGCAAGGACAAGGGCAAGGGCGAGGGCGAGGATGAGGATAAGGGTA
AGGGAAACGACAAGGGTAAGAAGGAGGACGAGGACGAGAGCAGTGACCGG
GGGGGAGAAGAGGAGTCCTCGAGAGGAGAAGAAGAAGAAGAAGAAGAAGA
AGATTCGTCCCTCCCGTCTCCCACAAATGCGGATCCCCCGTCTCCTACAA
ATGCGGAGCCCCTGTCTCCCACGGAGGCGCCCCCCCCGTCGCCCGCCGTT
GTTGGAGATGAAAGCACTGATGGGAATGGCAAGAGCAACAAGAACGACGA
CGACGACGACGACGACGACGACGACGACGACGACGATGACGACGACGACG
ACGACGACGGGAGTGAAGTCGAAAAGGAGGTTCTCGCCGCCTCCGCGGCC
GCCGCCGCCGCCGCCGGTGTCGCGGCCGCCGCGAACGGCCCTTCCTACGG
AGCAGCCGCGAGCCGCTCTTCTTCCTACGGGCAGTACCCCGCTTGGGACG
GGTTCGCCAAGCGCGGGAGAGAGCCGGGCGGCGGCAGCGTCGGCGCGAAT
GGCGCGAATGGCGCGACTGGCGAGAAAGGAGGAGGAGGAGCAGGAGGCGG
CCAAGGCGCGTGGTCGCACTTCTACGATAGGAACGGGTATAAGTGTTGGC
GCAACACCGTCACCGGGGAAAAGCGCAGCGTGGACCCTTACCGATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig173:184355..187351+

>mRNA_P-littoralis_Contig173.55.1 ID=mRNA_P-littoralis_Contig173.55.1|Name=mRNA_P-littoralis_Contig173.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1347bp|location=Sequence derived from alignment at P-littoralis_Contig173:184355..187351+ (Pylaiella littoralis U1_48)
ATGCACGCACAGCCGATGATGGCCGCTGGCGGGTCGTGGATGGCGTACCA
GGATCGCGAGGGCCGCCCGTGCTGGCACAACACAGCCACTAACGAGTGGA
CCTACAACCTGGCGGGCAGTGGTGGCGGTGGCGGTATGCTGGCGATGATG
GGCTACGGCTACCCCGCGACGAGCGGAGTATACGGCTGGCCCACAACACC
AGCCGGAGTAGCGGCGCCATCCCAAGGGTCTTTCTCTTACGGCGGGGGCG
GTGGCGGAGCCTTCATGACTCCGGGGGGGGTCATGATGGTGCCCGCAGCG
ACAAGTCCTTACGGCACTACTGCTGGTGCTGGTGCTGCTGCTGCTTTTGT
TGATCCAGTAACGGGGCAGCAAATGATGTACGTGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGTTGATGCAGCCGATGGCACAGGGGATGATGATG
ATGACGCCGGCGGCATACCAGCAGCTGCAGCAGCAGCAGTACGCACAGCA
CGTGTTCGGAGCTGCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
AATCCCCCCGCACGATGCCCGACCCAAACGGACCGGACATCGGGGTGATG
CTTGGCCCTGGGCCCGCGAGCGGCGTCATGCCGTACGCGAGCCACGATGC
TCGCGGGTCGATCCCGCTGCCGTTCGACCTGGACTCGATTATGCCGGCGT
GGTTTGCGGGAGCGGCGGCGGTGGGTGGCGCCGGCGCCGGCGGCGATGGC
GAATCGGGGGGGGTTTCCGGGTTTTTCGGCCGGATGATGCCTGGCGAAGC
GAAAAAGGGCAAGAAATCGAAGAACAAAAAAGGCGAGAAAGGTAAGGACA
AGGGCGAGGGAAAAGGCAAGGACAAGGGCAAGGGCGAGGGCGAGGATGAG
GATAAGGATGAAAGCACTGATGGGAATGGCAAGAGCAACAAGAACGACGA
CGACGACGACGACGACGACGACGACGACGACGACGATGACGACGACGACG
ACGACGACGGGAGTGAAGTCGAAAAGGAGGTTCTCGCCGCCTCCGCGGCC
GCCGCCGCCGCCGCCGGTGTCGCGGCCGCCGCGAACGGCCCTTCCTACGG
AGCAGCCGCGAGCCGCTCTTCTTCCTACGGGCAGTACCCCGCTTGGGACG
GGTTCGCCAAGCGCGGGAGAGAGCCGGGCGGCGGCAGCGTCGGCGCGAAT
GGCGCGAATGGCGCGACTGGCGAGAAAGGAGGAGGAGGAGCAGGAGGCGG
CCAAGGCGCGTGGTCGCACTTCTACGATAGGAACGGGTATAAGTGTTGGC
GCAACACCGTCACCGGGGAAAAGCGCAGCGTGGACCCTTACCGATGA
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