mRNA_P-littoralis_Contig173.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig173.17.1
Unique NamemRNA_P-littoralis_Contig173.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig173.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig173contigP-littoralis_Contig173:68130..69505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size385
Hectar predicted targeting categoryother localisation
Exons3
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789833.3753502-UTR-P-littoralis_Contig173:68129..681451680789833.3753502-UTR-P-littoralis_Contig173:68129..68145Pylaiella littoralis U1_48UTRP-littoralis_Contig173 68130..68145 +
1680789833.4162712-UTR-P-littoralis_Contig173:69448..695051680789833.4162712-UTR-P-littoralis_Contig173:69448..69505Pylaiella littoralis U1_48UTRP-littoralis_Contig173 69449..69505 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789833.3891578-CDS-P-littoralis_Contig173:68145..682581680789833.3891578-CDS-P-littoralis_Contig173:68145..68258Pylaiella littoralis U1_48CDSP-littoralis_Contig173 68146..68258 +
1680789833.3986008-CDS-P-littoralis_Contig173:68614..687831680789833.3986008-CDS-P-littoralis_Contig173:68614..68783Pylaiella littoralis U1_48CDSP-littoralis_Contig173 68615..68783 +
1680789833.4077277-CDS-P-littoralis_Contig173:69418..694481680789833.4077277-CDS-P-littoralis_Contig173:69418..69448Pylaiella littoralis U1_48CDSP-littoralis_Contig173 69419..69448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig173.17.1prot_P-littoralis_Contig173.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig173 68146..69448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig173.17.1

>prot_P-littoralis_Contig173.17.1 ID=prot_P-littoralis_Contig173.17.1|Name=mRNA_P-littoralis_Contig173.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MTDEDFEKLDDMAKHVGRMVSAAEAVFPVTEWSASFRELLYKSRDYEPLS
KFVIHHNARDRAALDYKNTLPPGMASNDGHEAWLKNQPWSPLVLADHVEA
RQR*
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mRNA from alignment at P-littoralis_Contig173:68130..69505+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig173.17.1 ID=mRNA_P-littoralis_Contig173.17.1|Name=mRNA_P-littoralis_Contig173.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1376bp|location=Sequence derived from alignment at P-littoralis_Contig173:68130..69505+ (Pylaiella littoralis U1_48)
TGCTTGTCCAGGGGTCATGACCGATGAGGACTTCGAGAAGCTCGACGATA
TGGCGAAGCACGTGGGTCGCATGGTATCCGCTGCCGAGGCAGTGTTTCCT
GTGACGGAGTGGAGCGCTTCCTTCAGAGAGTGAGTGTCCGACGACCATTC
CGCCGCTAATAAAAATAATATTCATCATGTGTCAATCGGGAGGCCATGCG
TCAATTTAGAGGGTGATTTGTTCCAGGTGTTTTGAATCGTACATGGAGCG
ACAGCATTACTCAAGTGGTCAGTCAGCCTTCACCCCTCCAATTGGGCACG
TTCTCGCCCACCTCCATACAAGCAACTGCCTTCAAATGTTTTGACCCTTA
CTGTTGAAGGGAGAAACAGAAAATGTCATCGTTTTCTTGAATTTTCTAGA
GTGCTGATTCTCATACTTGCTCATTTTTCGTCTCCTTCCGGCCGCGATTC
TCTTGACATGTCTTTTTCCGACCATATCGTTGTAGGCTGCTTTACAAGTC
TCGTGACTACGAGCCTTTGTCCAAGTTCGTCATACACCACAACGCAAGAG
ATAGGGCGGCGCTTGACTACAAGAACACGCTGCCGCCGGGGATGGCCTCG
AACGACGGGCACGAAGCTTGGTTGAAGAACCAACCGTGGTCACCGCTCGT
GCTGGTGGGTAAACGTTTATCTCTTGTCATGGCGTAGATGTGTGTGCATG
TGTGTGTAATTATTTTTGATTCTCACTTTCGATACCTCCCAGAGTCTAGC
CCGTGGTAAAAAATCAGGCACATGTCGTGCTAGAAGGAAAGATTGAGTTT
GTGTACAGTGCGGATTTTTATCTGTGTATACGTGTGTGATGTTTTGTTAT
GTTGCTGCTCTCTTTTCCCTTCGCCCCCCAAACTGATTACGTTATAGGAT
TCAGTTTTGATGTACCAAAGATCATGGTGTGCATTCCTTTGCGACAACGG
CCTGTTTAGAAAACGAACTTTAACCCTAACGATACAACCCGGCAACGAAG
AGTGCTTAAATGCGTGGCAGCAATGTACTTCGAAGTACAAGCAATGTTAG
TAACAATTTGTGCCGTGCCGTGGTTTTCATGTGTGCTTTTTTATCGTCAG
GCCACGAAAGGTTCAGAAGAGTCTCCGAACCCGATGCAGCACCTCTGGTT
GTTTCCCTGGAAGTCCCACTCTCATTTGATGTACTGTTGTCCGGTTGAGA
TGCAAAGTATTGTTGTTGGCTGCTAATCCTGAAAGTGAACGAGATACTGA
TTATGTTTCGTTGATTTTCCGACTGCTGCTGCCCTGCAGGCCGATCATGT
CGAAGCTCGTCAACGCTGACGTCTTTGGGCCCAATCAATGTCAGTTTGTC
GGCCTCAATCATCCGACGGGTCGCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig173:68130..69505+

>mRNA_P-littoralis_Contig173.17.1 ID=mRNA_P-littoralis_Contig173.17.1|Name=mRNA_P-littoralis_Contig173.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig173:68130..69505+ (Pylaiella littoralis U1_48)
ATGACCGATGAGGACTTCGAGAAGCTCGACGATATGGCGAAGCACGTGGG
TCGCATGGTATCCGCTGCCGAGGCAGTGTTTCCTGTGACGGAGTGGAGCG
CTTCCTTCAGAGAGCTGCTTTACAAGTCTCGTGACTACGAGCCTTTGTCC
AAGTTCGTCATACACCACAACGCAAGAGATAGGGCGGCGCTTGACTACAA
GAACACGCTGCCGCCGGGGATGGCCTCGAACGACGGGCACGAAGCTTGGT
TGAAGAACCAACCGTGGTCACCGCTCGTGCTGGCCGATCATGTCGAAGCT
CGTCAACGCTGA
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