mRNA_P-littoralis_Contig173.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig173.1.1
Unique NamemRNA_P-littoralis_Contig173.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig173.1.1 vs. uniprot
Match: A0A6H5JIS8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS8_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.270e-20
Identity = 52/89 (58.43%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:   43 GNPCDAPLVESYLLCAAEEQKVGGVAVKQAEPMLAHALETLLASMRTRAQLSLSIQERISITRDTALVALAFYTMHRGFDLSFTLASQV 309
            GNPC +P V++YL    EEQK  GV  KQA P+L   L  LL  MR RA  S S+ ERI+ITRD AL +LA ++M RGFDLSFTL SQV
Sbjct:  798 GNPCASPTVDAYLTFTTEEQKRVGVTAKQAAPLLEDTLGELLPHMRLRALASDSMAERIAITRDVALFSLAHHSMRRGFDLSFTLGSQV 886
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig173.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIS8_9PHAE1.270e-2058.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig173contigP-littoralis_Contig173:701..1011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size312
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789833.2302957-CDS-P-littoralis_Contig173:700..10091680789833.2302957-CDS-P-littoralis_Contig173:700..1009Pylaiella littoralis U1_48CDSP-littoralis_Contig173 701..1009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig173.1.1prot_P-littoralis_Contig173.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig173 701..1009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig173.1.1

>prot_P-littoralis_Contig173.1.1 ID=prot_P-littoralis_Contig173.1.1|Name=mRNA_P-littoralis_Contig173.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
RTTRSRRPVEPRDFGNPCDAPLVESYLLCAAEEQKVGGVAVKQAEPMLAH
ALETLLASMRTRAQLSLSIQERISITRDTALVALAFYTMHRGFDLSFTLA
SQV
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mRNA from alignment at P-littoralis_Contig173:701..1011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig173.1.1 ID=mRNA_P-littoralis_Contig173.1.1|Name=mRNA_P-littoralis_Contig173.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=311bp|location=Sequence derived from alignment at P-littoralis_Contig173:701..1011+ (Pylaiella littoralis U1_48)
CGAACAACTCGCTCGCGGCGACCCGTGGAACCCCGAGACTTTGGCAACCC
CTGTGACGCCCCGCTCGTCGAGTCCTACCTTCTCTGCGCGGCAGAAGAGC
AGAAAGTGGGGGGGGTCGCCGTCAAACAAGCGGAGCCCATGCTGGCGCAC
GCTCTCGAGACCTTGTTGGCAAGCATGCGCACGCGTGCTCAACTTTCGCT
TTCCATCCAGGAGCGTATCTCCATCACCAGAGACACCGCTCTTGTCGCGT
TGGCGTTCTACACTATGCACCGGGGATTCGACCTTTCGTTCACCCTTGCG
TCGCAAGTCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig173:701..1011+

>mRNA_P-littoralis_Contig173.1.1 ID=mRNA_P-littoralis_Contig173.1.1|Name=mRNA_P-littoralis_Contig173.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig173:701..1011+ (Pylaiella littoralis U1_48)
CGAACAACTCGCTCGCGGCGACCCGTGGAACCCCGAGACTTTGGCAACCC
CTGTGACGCCCCGCTCGTCGAGTCCTACCTTCTCTGCGCGGCAGAAGAGC
AGAAAGTGGGGGGGGTCGCCGTCAAACAAGCGGAGCCCATGCTGGCGCAC
GCTCTCGAGACCTTGTTGGCAAGCATGCGCACGCGTGCTCAACTTTCGCT
TTCCATCCAGGAGCGTATCTCCATCACCAGAGACACCGCTCTTGTCGCGT
TGGCGTTCTACACTATGCACCGGGGATTCGACCTTTCGTTCACCCTTGCG
TCGCAAGTC
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