mRNA_P-littoralis_Contig172.72.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig172.72.1
Unique NamemRNA_P-littoralis_Contig172.72.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig172.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig172contigP-littoralis_Contig172:410082..410785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size704
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789831.735329-UTR-P-littoralis_Contig172:410081..4103861680789831.735329-UTR-P-littoralis_Contig172:410081..410386Pylaiella littoralis U1_48UTRP-littoralis_Contig172 410082..410386 -
1680789831.7640932-UTR-P-littoralis_Contig172:410752..4107851680789831.7640932-UTR-P-littoralis_Contig172:410752..410785Pylaiella littoralis U1_48UTRP-littoralis_Contig172 410753..410785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789831.7503793-CDS-P-littoralis_Contig172:410386..4107521680789831.7503793-CDS-P-littoralis_Contig172:410386..410752Pylaiella littoralis U1_48CDSP-littoralis_Contig172 410387..410752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig172.72.1prot_P-littoralis_Contig172.72.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig172 410387..410752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig172.72.1

>prot_P-littoralis_Contig172.72.1 ID=prot_P-littoralis_Contig172.72.1|Name=mRNA_P-littoralis_Contig172.72.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
MVRHVTQHRGSREWLNTRMERGNEGTPAIRPHNPPVQFPTLGNEIAVHLS
SRHGGGSVTKDSRQGGLCPAGRGRRRTRVVPLSAARAFHPPRAVPLVSHE
DRSSPLTDGVGRGAIAPLFIC*
back to top

mRNA from alignment at P-littoralis_Contig172:410082..410785-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig172.72.1 ID=mRNA_P-littoralis_Contig172.72.1|Name=mRNA_P-littoralis_Contig172.72.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=704bp|location=Sequence derived from alignment at P-littoralis_Contig172:410082..410785- (Pylaiella littoralis U1_48)
CAACAGTCGAAACCAAAGAAAACATGGGAGGAAATGGTACGGCATGTGAC
CCAGCATCGAGGGTCGAGAGAATGGTTGAACACGAGAATGGAGAGGGGAA
ACGAGGGCACCCCAGCAATTCGTCCGCACAACCCTCCCGTTCAATTTCCT
ACGCTGGGAAACGAAATTGCAGTCCATCTCTCGTCCCGGCATGGTGGGGG
TTCAGTCACAAAGGATTCGCGGCAAGGAGGGTTATGCCCAGCAGGGAGAG
GGAGAAGAAGAACACGTGTTGTTCCACTTTCAGCCGCGCGGGCTTTCCAC
CCGCCTCGGGCTGTCCCACTTGTTTCCCATGAAGACAGGTCCTCCCCCCT
CACTGATGGAGTTGGCCGGGGTGCAATTGCTCCTTTATTTATTTGCTGAT
TTTCGGTTGAGTCCTTCTTTGATTTTCGGTTGAGTCCTTCTTTGGTGTTT
CGGATGCTGCAGCAAACCTTGTTGTCGCCTGTAGGAATCCTCACGCCATA
ACTTGCGTCGAAGCAAGCAGATTTAAGCGAGGAAAGACAGGAAACGTACA
CGAAACACGTACCACGGACGATTTCAAAATCACGAAAGCAGCTTTGCTAG
GCGGAGTCCCTATCTTCAACACACCCCGTTGGACTGCCAATCACGTTTTG
GTGTCCACCATCTCCGACGTTGCCCTATGCTAGCAACGATGGAGAGGATT
TGTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig172:410082..410785-

>mRNA_P-littoralis_Contig172.72.1 ID=mRNA_P-littoralis_Contig172.72.1|Name=mRNA_P-littoralis_Contig172.72.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig172:410082..410785- (Pylaiella littoralis U1_48)
ATGGTACGGCATGTGACCCAGCATCGAGGGTCGAGAGAATGGTTGAACAC
GAGAATGGAGAGGGGAAACGAGGGCACCCCAGCAATTCGTCCGCACAACC
CTCCCGTTCAATTTCCTACGCTGGGAAACGAAATTGCAGTCCATCTCTCG
TCCCGGCATGGTGGGGGTTCAGTCACAAAGGATTCGCGGCAAGGAGGGTT
ATGCCCAGCAGGGAGAGGGAGAAGAAGAACACGTGTTGTTCCACTTTCAG
CCGCGCGGGCTTTCCACCCGCCTCGGGCTGTCCCACTTGTTTCCCATGAA
GACAGGTCCTCCCCCCTCACTGATGGAGTTGGCCGGGGTGCAATTGCTCC
TTTATTTATTTGCTGA
back to top