mRNA_P-littoralis_Contig172.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig172.23.1
Unique NamemRNA_P-littoralis_Contig172.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig172.23.1 vs. uniprot
Match: D7G7H0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H0_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 1.200e-57
Identity = 211/507 (41.62%), Postives = 261/507 (51.48%), Query Frame = 1 
Query:    1 MFLASMGRLKHKRTRNTIAAEPTPRSSCASEADHKTAPPPGDACCPEPQAAIQTSS----EVRALVGGHNS-----DTTSARRSHRQEGTGWRSARPGPPHWVAGRNVGGDGGDSDGAGSFAASVVRSARPLA-----DYDSYDAEHGQRRLAAPRCGMKGRPKSANAAVGGVAHAAAASDAQYPAAHTLAAETRLMPVKTIGKAFHGHRLAGVQAWDPHSAAAVRAARAERFLRRARIEWTTGG-----PMAAPEKAR-------RAAAAS-----IRGYNSDKPTIRHGRRE-DQHRGVSAPT----GRGKGEGDGGPD-DWCGMRGLMKDCRTELDRRKLARAASAIKKNGGSR--HGGAQWARGTSGDGGGGVQHLRTAERETFRRSPCSSRSSTGASACCRGSKTGSVRGFTRGSATGTCSTLSTSRTSTATTCYSSRVDGSSRASSRRDESCALS-SGDVTTEERRTRLLAELEILRRRMEEAEGLLLKVDNSLLSKPKRR 1401
            MFLASMGRLKHKRTRNTIAAE TPRSSC+SEAD  TA    D   P+     QT+S    E  A+V G ++     +T  A    R   + W    PG  H  +G+ V    GD  G  + A S  R   P A     D DS+   HG           KG P   N    G   A++A+ A++P    +AAETRLMPV  + +AF G RLA VQAWDP +AAAVRA RAE+ LRRA +  T        P AAP + R       +AAA +     + G  SD+     G R+    R V  P     GRG   GD   D DWCG RGL +D R E  R +LAR  +A+++ GGSR  HG    ++   G    G   L T +R+      C SR S       + SK+ S  G +R   T    T  T+RTSTAT+  SSR   S R SS  +     S SGD   E RR RLLAELE+LRRRM +AEGLL +VD S   +PK+R
Sbjct:    1 MFLASMGRLKHKRTRNTIAAEETPRSSCSSEAD-PTAALVADPGIPKTTEKHQTNSVKNIENEAVVKGVSAPVQYAETRGAAAVGRA--SDWPGDNPGVKHMNSGKAV----GDRKGFRTPAWSPPRPLSPTAKRNDQDADSHPRNHGISNGGDDLLPAKG-PTEGNL---GARAASSATSAKFPTGEDVAAETRLMPVGALHRAFKGRRLAAVQAWDPLAAAAVRAERAEKMLRRALLGRTRANSGETMPAAAPARRRPRKAPGTKAAATTTTEHKVGGIGSDRGGGVGGARKCSSARRVGGPAERAVGRGGSLGDSKSDADWCGSRGLRRDARREPSRTELARTVAAVERIGGSRIVHGAGAPSKPAVGGTPAGANDLSTRKRDAVEGGSCPSRGSI------KTSKSRSASGSSR--ETNPMHTWGTARTSTATS-RSSRCPSSRRGSSACNSGRGTSVSGDEPVEMRRARLLAELEVLRRRMHDAEGLLREVDRS---RPKQR 484
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BLAST of mRNA_P-littoralis_Contig172.23.1 vs. uniprot
Match: A0A6H5KIE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 8.810e-20
Identity = 88/211 (41.71%), Postives = 104/211 (49.29%), Query Frame = 1 
Query:  328 GSFAASVVRSARPLADYDSYDAEHGQRRLAAPRCGMKGRPKSANAAVGGVAHAAAASDAQYPAAHTLAAETRLMPVKTIGKAFHGHRLAGVQAWDPHSAAAVRAARAERFLRRARIEWTTGG----PMAAPEKARRAAAASIRG-------------YNSDKPTIRHGRREDQHRGVSAPT----GRGKGEGDGGPD-DWCGMRGLMKDCR 894
            GSF ASV+ SAR L +YD      G   +   R     RPKSANAA   V    AA+ A++ +A  +AAETRLMPV  I +AF G RLA VQAWDP +AAAVRA RAE+ LRRA +  T       P AAP + R   A   +G                        R+    R    P     GRG  EGD     DWCG RGL +D R
Sbjct:  329 GSFTASVLNSARALPEYDLRPKGDGSFTV---RTKGDQRPKSANAAAASVN---AAAGAKFSSAEDVAAETRLMPVGVIHRAFKGRRLAAVQAWDPLAAAAVRAERAEKMLRRAFLGRTGTNSREMPAAAPARRRPRKAPGTKGAXXXXXXXXXXXXXXXXXXXXXXXRKCSSARRAGGPAERTIGRGGSEGDSKSHADWCGSRGLRRDAR 533
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig172.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7H0_ECTSI1.200e-5741.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIE2_9PHAE8.810e-2041.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig172contigP-littoralis_Contig172:99040..102722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1404
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_000240.1
Cds size1404
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789832.4659133-CDS-P-littoralis_Contig172:99039..991991680789832.4659133-CDS-P-littoralis_Contig172:99039..99199Pylaiella littoralis U1_48CDSP-littoralis_Contig172 99040..99199 -
1680789832.4802222-CDS-P-littoralis_Contig172:100197..1005451680789832.4802222-CDS-P-littoralis_Contig172:100197..100545Pylaiella littoralis U1_48CDSP-littoralis_Contig172 100198..100545 -
1680789832.488655-CDS-P-littoralis_Contig172:101148..1017191680789832.488655-CDS-P-littoralis_Contig172:101148..101719Pylaiella littoralis U1_48CDSP-littoralis_Contig172 101149..101719 -
1680789832.4967146-CDS-P-littoralis_Contig172:101851..1019561680789832.4967146-CDS-P-littoralis_Contig172:101851..101956Pylaiella littoralis U1_48CDSP-littoralis_Contig172 101852..101956 -
1680789832.5125957-CDS-P-littoralis_Contig172:102502..1027221680789832.5125957-CDS-P-littoralis_Contig172:102502..102722Pylaiella littoralis U1_48CDSP-littoralis_Contig172 102503..102722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig172.23.1prot_P-littoralis_Contig172.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig172 99040..102722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig172.23.1

>prot_P-littoralis_Contig172.23.1 ID=prot_P-littoralis_Contig172.23.1|Name=mRNA_P-littoralis_Contig172.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=468bp
MFLASMGRLKHKRTRNTIAAEPTPRSSCASEADHKTAPPPGDACCPEPQA
AIQTSSEVRALVGGHNSDTTSARRSHRQEGTGWRSARPGPPHWVAGRNVG
GDGGDSDGAGSFAASVVRSARPLADYDSYDAEHGQRRLAAPRCGMKGRPK
SANAAVGGVAHAAAASDAQYPAAHTLAAETRLMPVKTIGKAFHGHRLAGV
QAWDPHSAAAVRAARAERFLRRARIEWTTGGPMAAPEKARRAAAASIRGY
NSDKPTIRHGRREDQHRGVSAPTGRGKGEGDGGPDDWCGMRGLMKDCRTE
LDRRKLARAASAIKKNGGSRHGGAQWARGTSGDGGGGVQHLRTAERETFR
RSPCSSRSSTGASACCRGSKTGSVRGFTRGSATGTCSTLSTSRTSTATTC
YSSRVDGSSRASSRRDESCALSSGDVTTEERRTRLLAELEILRRRMEEAE
GLLLKVDNSLLSKPKRR*
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mRNA from alignment at P-littoralis_Contig172:99040..102722-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig172.23.1 ID=mRNA_P-littoralis_Contig172.23.1|Name=mRNA_P-littoralis_Contig172.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3683bp|location=Sequence derived from alignment at P-littoralis_Contig172:99040..102722- (Pylaiella littoralis U1_48)
ATGTTTCTCGCCTCCATGGGACGACTCAAGCACAAGAGGACGCGCAATAC
CATCGCCGCGGAGCCTACGCCGCGCTCCTCCTGCGCTTCCGAAGCGGACC
ACAAAACGGCGCCACCACCAGGAGATGCCTGCTGCCCCGAGCCCCAAGCG
GCGATTCAAACTTCGAGCGAGGTGAGGGCTCTTGTGGGGGGACACAACTC
AGACACAACTTCCGCCAGACGTAGTTCAAACGAGAAGGGTTGTGACACCT
CACCGTCGGAGTCGGATCCACGCTTTCCGACGTCCACAGCTTTTACGCTT
GGAAAAAGATCCGACCACGATTGTCGTGGGAAGCTGACGGGTGGTAAACG
CGTGCCAGCAGATCAATCGCCCCCTGCAGGAAGGCTCGAAAAGGAAGCGA
GGGCACCTTCTGCAGCCGTACCTCGTTGTCCACCACGACGCGCCTCTGAG
CGTCAAACAAACTCACCGAGCCATCGACAGCTCGACCGTCGCAGACGCCC
CCGTTCTGTTGGTCCAGGGGGGCGGCACCGACCGCCATCGTCCGGCGCTG
ATCTCGCACGCGGCTCGCAGTCAGATGCCCCTAGCCCCTCGAACAATTCC
AGGCGGGCGGTCTTGGCGGCGAAGCCGGTAGGGAGCGTTCCTCTTCACAT
CGGCCCCGAAATATCCCGGGCTGTTCCTGCCGAAGGCCCGGAGTCACCTG
GAGCAGGTCCTGGTGCATCCTTCTCCTCCACCGTCGCACGGGTCCGTTCC
CGTCCGGCGACGGCAGGAAGTCATCGGCAGGAAGGAACGGGGTGGCGGTC
AGCACGGCCGGGTCCGCCGCATTGGGTGGCAGGAAGAAACGTTGGCGGTG
ACGGTGGCGATAGCGATGGAGGTGGCCGTGGTGATGGTGGTTGTGGCGAA
CGTAGCCGTGCCGTCTGCCAAACGGAGGGAAAAATAACGCATCCGGCGTC
GAATGCGAGGGTCGCAAGCGGCGGCGGCGGTGACCAGCTATCGTCAGATG
AAGCGGGGTCATTTGCGGCAAGCGTCGTAAGGAGCGCGCGGCCCTTGGCC
GACTACGACAGCTACGACGCAGAGCACGGCCAACGGCGGCTGGCTGCTCC
TCGCTGTGGCATGAAAGGCCGACCAAAGAGCGCTAATGCAGCAGTCGGGG
GCGTTGCTCATGCCGCCGCTGCCTCAGATGCCCAATATCCGGCAGCGCAC
ACCCTCGCAGCAGAGACTCGACTAATGCCCGTCAAGACCATCGGTAAGGC
CTTCCACGGACATCGCCTTGCAGGCGTGCAGGCATGGGACCCGCACAGCG
CAGCCGCCGTTCGCGCGGCCAGAGCAGAAAGGTTTCTGCGGCGAGCCCGC
ATCGAATGGACCACAGGAGGTCCGATGGCTGCACCGGAGAAGGCACGGCG
GGCGGCGGCGGCCAGCATACGCGGTTACAACAGTGACAAACCAACTATTC
GACACGGTAGACGCGAGGACCAACATCGGGGAGTTTCTGCGCCGACTGGA
CGAGGGAAGGGTGAGGGGGACGGAGGACCGGACGACTGGTGCGGCATGCG
CGGTTTGATGAAGGACTGTCGCACGTAAGATATAGGCGAGGGCCTTTCCT
CGACCTCAAGCGGAAAGGGGCGCGTGCGCAAAGTCGGAACCCCTCCCATA
AAAGTGGAAATTTATGCTCACGGGCTCCGGGGCAGGAATATTTTCGTTTC
GGCGCATCAAACCTCTGTATGGATAACCAATTTTTCCACGATGAAAGATG
TAACCCCCTTTGAAAACGTGCAACACGTTTTCAACAGACAAACATAGTGG
AAGAGATTCGATAGGGGAATTCCCGGACAAACGGCGAACGTAATAGGAGC
GCATGCCTAGGGGGGGTGCATCGGCCTTGTAGATGTTCCGACTTCGATTC
GCTCGACACCACTGGGAGCCACGCATTACGCTCGTGCATTTTCTGGTGGT
CAATGTCACAAACATTTACGTTGGATTGTGCGTGGATGTCATACTACGGG
TATCTGCTCGTTGGCAACGAGTTACGCTGAAAAAATGACGGAGCTGTAGC
AGACAGTCGAATAATGTCTTACGGTATCCATCAAGGATCTGTGGCATCTT
CTCTGATTCTTAACCAAACGGACGACCCACAGCGCTGCCCCTGCATCCCC
TTTGACATCCCGAACGCGCTGCCCCAGAGAACTAGACCGGAGAAAACTCG
CTCGAGCCGCCTCCGCAATAAAGAAAAATGGGGGAAGCCGCCATGGGGGT
GCGCAGTGGGCAAGAGGCACGTCCGGCGACGGCGGCGGCGGAGTGCAGCA
CCTTCGCACCGCGGAGCGGGAAACCTTCAGGCGGTCACCGTGCTCTTCGC
GCTCAAGCACCGGAGCTAGCGCTTGCTGTCGAGGCTCGAAGACGGGTTCG
GTAAGGGGTTTTACGAGAGGTTCAGCGACTGGCACGTGCTCTACGCTGAG
TACGTCACGGACGTCCACCGCGACGACCTGTTATTCTTCCCGTGTGGACG
GTAGCAGCCGCGCTTCTTCACGACGGTGAGAAACCAGCCGAGCCGAGGGC
CCACCCGCCCCTTTTTTTAGAGACGGCCTTGACTCGGCCGGCTATCGGTA
ATGCAGAATGCGGGGAACATCTGCTGTGTGAAACGCTCCCGCTGGGATAC
ATGAAGCTCCTAAGCCGTAGGCGCAGAACCGCTTTTCTCAACCTGTTGTA
GTGTTAGTCGCTCTCACTCGTGCCTCAAACGTACGGCAGTAGTTGTTTGT
CGGTGGGGTTCTCGTCCGAGGAAGCGAGGTCACGTGCGGTACTCACGTTG
AGCAAACGTTTCAGGGTGGGCTTTTCCCCACACGTGACGTGCAAATCTCG
TAACTAATGATATACTCTGGCTTTGCGGTTTATTCCGACGAAATTGCCGG
TCGACCGAAGCCGCTCGACATCGAGGACAGTGAGTAGGCGGCGTTGTATT
GGTACTCCCACCACCGAACAGATCGGAGTTTCATCGACGTTCGGGCGTTT
TTGGCCTGACCATAAGGTTGAGCGAGACTCAAGCCAATTTTGTGTCTCGA
GGCTTCGTTGTGGACGCGTCGGTAAGCAGAAAGAGGTATGGCCTCGATGT
GTTCCATTTTTCAGCCCCTGAATAAAGATTCGTACAATACCAGGTACACA
ACAACGAACACATGGTACGAGTACAAAACGAGCGCGACGTCAGGCTCGAA
ACCCCCTACCGCGTAAACAAACAGTCCCCCTTAGACCGCGGAAACAACCT
GGCCTTCCCCTTGACGGTCTACATCTTGCCGTTGAACTTTTACCTGTGGA
TTGTGATTGTGGAGTATTTCGCCGCTACAGGTGTATATTGTAGATCACCC
GGTTCCTACCACACAGTACCTCCTGCAAAGTCAAACGCAATCTCTCAGAG
AGCCTTCTGCAAACATGCATGCCTTACATCCTGAACATATTTCCCCTTCC
CCTTGGCTATTTGGCCGCGCTCACCTTAATCAACCGTTGGACTCTCCCTG
CTGTGTAGAAGCGCACACAAGAGTGACGAGAGCTGTGCCTTGAGCTCAGG
CGACGTCACGACCGAAGAGAGACGGACACGCCTCCTGGCGGAGCTGGAAA
TCCTTCGGAGGCGGATGGAGGAGGCGGAAGGCCTGCTGCTCAAGGTGGAC
AACTCTCTGCTGTCCAAGCCGAAAAGAAGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig172:99040..102722-

>mRNA_P-littoralis_Contig172.23.1 ID=mRNA_P-littoralis_Contig172.23.1|Name=mRNA_P-littoralis_Contig172.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1404bp|location=Sequence derived from alignment at P-littoralis_Contig172:99040..102722- (Pylaiella littoralis U1_48)
ATGTTTCTCGCCTCCATGGGACGACTCAAGCACAAGAGGACGCGCAATAC
CATCGCCGCGGAGCCTACGCCGCGCTCCTCCTGCGCTTCCGAAGCGGACC
ACAAAACGGCGCCACCACCAGGAGATGCCTGCTGCCCCGAGCCCCAAGCG
GCGATTCAAACTTCGAGCGAGGTGAGGGCTCTTGTGGGGGGACACAACTC
AGACACAACTTCCGCCAGACGAAGTCATCGGCAGGAAGGAACGGGGTGGC
GGTCAGCACGGCCGGGTCCGCCGCATTGGGTGGCAGGAAGAAACGTTGGC
GGTGACGGTGGCGATAGCGATGGAGCGGGGTCATTTGCGGCAAGCGTCGT
AAGGAGCGCGCGGCCCTTGGCCGACTACGACAGCTACGACGCAGAGCACG
GCCAACGGCGGCTGGCTGCTCCTCGCTGTGGCATGAAAGGCCGACCAAAG
AGCGCTAATGCAGCAGTCGGGGGCGTTGCTCATGCCGCCGCTGCCTCAGA
TGCCCAATATCCGGCAGCGCACACCCTCGCAGCAGAGACTCGACTAATGC
CCGTCAAGACCATCGGTAAGGCCTTCCACGGACATCGCCTTGCAGGCGTG
CAGGCATGGGACCCGCACAGCGCAGCCGCCGTTCGCGCGGCCAGAGCAGA
AAGGTTTCTGCGGCGAGCCCGCATCGAATGGACCACAGGAGGTCCGATGG
CTGCACCGGAGAAGGCACGGCGGGCGGCGGCGGCCAGCATACGCGGTTAC
AACAGTGACAAACCAACTATTCGACACGGTAGACGCGAGGACCAACATCG
GGGAGTTTCTGCGCCGACTGGACGAGGGAAGGGTGAGGGGGACGGAGGAC
CGGACGACTGGTGCGGCATGCGCGGTTTGATGAAGGACTGTCGCACAGAA
CTAGACCGGAGAAAACTCGCTCGAGCCGCCTCCGCAATAAAGAAAAATGG
GGGAAGCCGCCATGGGGGTGCGCAGTGGGCAAGAGGCACGTCCGGCGACG
GCGGCGGCGGAGTGCAGCACCTTCGCACCGCGGAGCGGGAAACCTTCAGG
CGGTCACCGTGCTCTTCGCGCTCAAGCACCGGAGCTAGCGCTTGCTGTCG
AGGCTCGAAGACGGGTTCGGTAAGGGGTTTTACGAGAGGTTCAGCGACTG
GCACGTGCTCTACGCTGAGTACGTCACGGACGTCCACCGCGACGACCTGT
TATTCTTCCCGTGTGGACGGTAGCAGCCGCGCTTCTTCACGACGTGACGA
GAGCTGTGCCTTGAGCTCAGGCGACGTCACGACCGAAGAGAGACGGACAC
GCCTCCTGGCGGAGCTGGAAATCCTTCGGAGGCGGATGGAGGAGGCGGAA
GGCCTGCTGCTCAAGGTGGACAACTCTCTGCTGTCCAAGCCGAAAAGAAG
GTGA
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