mRNA_P-littoralis_Contig172.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig172.2.1
Unique NamemRNA_P-littoralis_Contig172.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig172.2.1 vs. uniprot
Match: D7FT74_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT74_ECTSI)

HSP 1 Score: 597 bits (1539), Expect = 1.370e-205
Identity = 368/525 (70.10%), Postives = 402/525 (76.57%), Query Frame = 3
Query:  111 MADFLNLDSRGSKLQKEQQKRRDAARLRIQREKRAKEAAARDQARIEEQIKSRKLEQRXXXXXXXXXXEADLIRTAGVSYKKSLVAVTAEGEGDKILLPPSALESLSAQDAVGLGPMLFELTGTSTARTSAGHEAAATEGKKNAAIQSAPSTTTRTTHAGVLEFVADEGTVGLPRKVVLSLLGATAQQVPLRSNQES---NEGQENEAANRTAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYVNVWRRGKEFSMK-------------------VVELRPEPQVTVIDTDMEIELDLPEKAREQLEEKGAQDRAKTLRAHMDAA--KPPGSSPGGSLSPTPT----VVMGVGGQVL-GGSGTATSSFSPMDDGEXXXXXXXXXXXDRTNGGA--KNTFDPVKHRLAKFQELPEEPRRDEEDVFTCQLRSPEGKFTRRFRFGDPLGVLLDFAESQGGVPGQYRLVVPFPRRVFLRDDASSRTTLREAGLTSRQESVILERL 1592
            MADFLNLDSRG+KL+KEQQKRRDAARLRIQRE+R+KEAAA+DQARI            XXXXXXXXXX  D IRTAG+SYK+SL+AVTA+GEGDKILLPPSALE LS QDAVGLGPMLFELT T    TS     +  + +K  A+Q    TTTRTTHAGVLEFVADEGT+GLPRKVVLSLLGA A QVP R++ E+   N+  EN  A R AVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGD+++VWRRGKEFS+K                   VVELRPEPQVTVIDTDMEIELDLPEKAREQL+EKGAQDRAKTLRAHM AA     GSSP  SLSP P+     V G G  V  GG  T+T+  SPMDD E           +R+  G   K  FD  KHRLAKFQ+LPEEP RDEE VFTCQLR+ EGKFTRRFRF D LGVLLDF E+QGGVPGQYRLV+PFPRRV  RDDAS+ TTL EAGLTS+QESVILERL
Sbjct:    1 MADFLNLDSRGNKLKKEQQKRRDAARLRIQRERRSKEAAAKDQARIXXXXXXXXXXXXXXXXXXXXXXXXDQIRTAGISYKESLLAVTADGEGDKILLPPSALECLSRQDAVGLGPMLFELTCT----TSGAAPTSQQQPEKAPALQGGTITTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANDDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDHLSVWRRGKEFSLKSEDSHSPLTPEREPPLTMQVVELRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRAKTLRAHMGAATISSRGSSPTQSLSPPPSGRGYAVGGKGSSVAAGGRDTSTTGLSPMDDSESDDDSDLDSDDERSTPGGPKKGAFDLEKHRLAKFQQLPEEPPRDEEGVFTCQLRTTEGKFTRRFRFADALGVLLDFCEAQGGVPGQYRLVMPFPRRVLTRDDASAGTTLHEAGLTSKQESVILERL 521          
BLAST of mRNA_P-littoralis_Contig172.2.1 vs. uniprot
Match: A0A4D9CT31_9STRA (UBX domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT31_9STRA)

HSP 1 Score: 177 bits (448), Expect = 6.670e-45
Identity = 139/404 (34.41%), Postives = 191/404 (47.28%), Query Frame = 3
Query:  333 TAGVSYKKSLVAVTAEGEGDKILLPPSALESLSAQDAVGLGPMLFELTGTSTARTSAGHEAAATEGKKNAAIQSAPSTTTRTTHAGVLEFVADEGTVGLPRKVVLSLLGATAQQVP-----LRSNQESNEGQENEAANRTAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYVNVWRRGKEFSMKVVELRPEPQVTVIDTDMEIELDLPEKAREQLEEKGAQDRAKTLRAHMDAAKPPGSSPGGSLSPTPTVVMGVGGQVLGGSGTATSSFSPMDDGEXXXXXXXXXXXDRTNGGAKNTFDPVKHRLAKFQELPEEPRRDEEDVFTCQLRSPEGKF-TRRFRFGDPLGVLLDFAESQG------GVPGQYRLVVPFPRRVF 1508
            TAG++Y   L   T  GEGDKI+LPPSALE+L+ QDA+ LGPMLF+L+                EG K+  + +      R THAGVLEF A++G +GLP KV  SL+    +        ++   E   G+E ++    A      V V+YVRL K T+A+V P T  L  V EL+ MLE N++NHATL+ GD + VW RG+ F ++V  L P   VTVIDTD+ +++++PE+  E+  E+         R   DA                    GV GQV+GG G         +                 N GAK      +    +  +L  EP     D     +R P+G   +RRF    P   +  F E+         +   YRLV  FPRRVF
Sbjct:   71 TAGITYSCDLWPYTVSGEGDKIILPPSALETLTQQDALALGPMLFQLS------------LLPAEGNKSKQLPAGA----RVTHAGVLEFSAEDGRIGLPLKVRKSLVAEPEETREDGSRGMKERVEGPGGEEGDSRASPAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVTGLEPTQAVTVIDTDLTVDVEVPEEQTEREREES--------RLSADAG-------------------GVKGQVVGGGGPPPHVSQSCES----RGQEAGMEEPSVNSGAKEEERRKRMMATQLSKLAPEPDEGNGDWIALVVRKPDGSMISRRFLRSQPFQDVFRFVEATSVSSDHDPLDMTYRLVTRFPRRVF 427          
BLAST of mRNA_P-littoralis_Contig172.2.1 vs. uniprot
Match: A0A5C7HE24_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7HE24_9ROSI)

HSP 1 Score: 139 bits (349), Expect = 6.090e-31
Identity = 100/294 (34.01%), Postives = 160/294 (54.42%), Query Frame = 3
Query:  147 KLQKEQQKRRDAARLRIQREKRAKEAAARDQARIEEQIKSRKLEQRXXXXXXXXXXEADLIRTAGVSYKKSLVAVTAEGEGDKILLPPSALESLSAQDAVGLGPMLFELTGTSTARTSAGHEAAATEGKKNAAIQSAPSTTTRTTHAGVLEFVADEGTVGLPRKVVLSLLGATAQQVPLRSNQESNEGQENEAANRTAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYVNVWRRGKEFSMKVVELRPEPQVTVIDTDMEIELDLPEKARE 1028
            KL+KEQ++R+D ARLR+ R+++AKE A + +  IE   +SR+L+            + DL+   G+ + +   A+  +G GDKI LPPS    LS Q A   GP+ F+L        S  H+    EG  N  ++++     RTTH+GVLEF ADEG+VG+P  V  +L                        ++ T    L  V VRYVRL K T+A++ P+T G +++   +A+LE ++R HATL+  D   V      + ++V+EL+P   ++V++TD+E+++  P++  E
Sbjct:   11 KLEKEQKERKDRARLRLDRDRKAKEEAKKQRDAIEAVQRSRRLDAIDAQLKADQLMQEDLLAGGGIVFSRIFEALPYQGSGDKIKLPPSCFSELSGQGAFDKGPLHFKL--------SVVHQ----EGPSN--MKNSEGENLRTTHSGVLEFTADEGSVGVPPHVWSNLF----------------------PSDNTLTAPL--VEVRYVRLPKGTYAKLQPDTSGFTELPNQKAILETSLRQHATLSQDDVFTVNYGELAYKLRVLELKPSSSISVLETDIEVDIVSPDEKSE 266          
BLAST of mRNA_P-littoralis_Contig172.2.1 vs. uniprot
Match: A0A662YG13_9STRA (UBX domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YG13_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.050e-30
Identity = 122/318 (38.36%), Postives = 173/318 (54.40%), Query Frame = 3
Query:  123 LNLDSRGSKLQKEQQKRRDAARLRIQREKRAKEAAARDQARIEEQIKSRKLEQRXXXXXXXXXXEADLIRTAGVSYKKSLVAVTAEGEGDKILLPPSALESLSAQDAVGLGPMLFELTGTSTARTSAGHEAAATEGKKNAAIQSAPSTTTRTTHAGVLEFVADEGTVGLPRKVVLSLLGATAQQVPLRSNQESNEGQENEAANRTAVEGLENVVVRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMRNHATLTVGDYVNVWRRGKE-FSMKVVELRPEPQVTVIDTDMEIELDLP-------EKAREQLEEKGA 1049
            L+L+SR +K  +EQ KRRD A+ +I+ E+R + A A+ +  +E     +++E  XXXXXXX     +   T G+ Y + L  V   G+GDKI LP SALE L+ Q+A+ LG   FEL+           E  ATE  +            R THAGVLEFVADEGTVGLP KV  SL    A+Q+P                        +N+ VR+VRL K  FA + P   G  +   + + +LE +++ H TLTVGD + V R G+E F + V EL+PE  V +++TD+E+ + LP       ++A +QLEE+ A
Sbjct:    3 LDLNSRSAKWNREQTKRRDQAKRKIEAERRKRVAVAKAREELEALQTQKRVEXXXXXXXXXQQALEEQRLTGGIKYLQQLRPVPTSGDGDKITLPVSALEELNPQNALELGVFTFELSYD---------EPEATESWQ------------RKTHAGVLEFVADEGTVGLPPKVAASLF-QNAKQLP------------------------DNIRVRFVRLEKGKFASLQPRGDGFGERQIDFKHLLERSLKAHTTLTVGDVLFV-RHGRETFEVVVAELKPEEAVNILNTDLEVAI-LPSESAARAKEAEKQLEEEAA 272          
BLAST of mRNA_P-littoralis_Contig172.2.1 vs. uniprot
Match: A0A834YT92_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834YT92_9MAGN)

HSP 1 Score: 137 bits (344), Expect = 2.640e-30
Identity = 102/307 (33.22%), Postives = 160/307 (52.12%), Query Frame = 3
Query:  123 LNLDSRGSKLQKEQQKRRDAARLRIQREKRAKEAAARDQARIEEQIKSRKLEQRXXXXXXXXXXEADLIRTAGVSYKKSLVAVTAEGEGDKILLPPSALESLSAQDAVGLGPMLFELTGTSTARTSAGHEAAATEGKKNAAIQSAPSTTTRTTHAGVLEFVADEGTVGLPRKVVLSLLGATAQQVPLRSNQESNEGQENEAANRTAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYVNVWRRGKEFSMKVVELRPEPQVTVIDTDMEIELDLPEKAREQLEEK 1043
              L +   KL++EQ++R+D ARLR+ RE++AK+ A   +  IE   + R+++            E  L    GV + + L A+  +G GDKI LP S    LS Q A+  GPM F+L+          H+    EG  +A      S+  RTTH+GVLEF A EG+V LP  V  +L    A + PL                         + VRYV L K T+A++ P+ +G S V   +A+LE ++R HATL+ GD V V      + ++V+EL+P   V+V++TD+E+++  P+ + E+ +++
Sbjct:    3 FELRAAREKLEREQKERKDKARLRLDRERKAKQVAILQREAIESAQRIRRIDAAEAQLKANQQMEESLFAGKGVMFYRILEAIPYQGYGDKIKLPTSCFTELSDQGALDKGPMYFQLSKV--------HQ----EGPPDANCTGQQSS--RTTHSGVLEFTATEGSVELPPHVWTNLFSTDAPKSPL-------------------------IEVRYVWLPKGTYAKLQPDGMGFSDVPNHKAVLETSLRQHATLSQGDVVTVHHGNLFYKLRVLELKPSCSVSVLETDVEVDIMGPDSSSERTDQR 270          
BLAST of mRNA_P-littoralis_Contig172.2.1 vs. uniprot
Match: A0A7S3XVE0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVE0_HETAK)

HSP 1 Score: 125 bits (315), Expect = 6.240e-30
Identity = 71/138 (51.45%), Postives = 89/138 (64.49%), Query Frame = 3
Query:  576 TTHAGVLEFVADEGTVGLPRKVVLSLLGATAQQVPLRSNQESNEGQENEAANRTAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYVNVWRRGKEFSMKVVELRPEPQVTVIDTD 989
            TTH GVLEF A+EG VGLP KV+ SL G   +Q             +N      A   +  V ++Y+RL KATFA++ PE  GLSQ+ E+RA+LEHNMRNHATL++GD + VW RGK F  +V+ELRP    TVIDTD
Sbjct:   14 TTHCGVLEFTAEEGCVGLPPKVLASL-GIAPEQ-------------DNTQHQGVAPSSVGQVQIKYIRLEKATFAKIRPEKAGLSQIDEIRAVLEHNMRNHATLSLGDKLIVWFRGKAFECEVLELRPAAACTVIDTD 137          
BLAST of mRNA_P-littoralis_Contig172.2.1 vs. uniprot
Match: A0A8K0MER5_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0MER5_9ROSA)

HSP 1 Score: 135 bits (341), Expect = 6.390e-30
Identity = 101/298 (33.89%), Postives = 155/298 (52.01%), Query Frame = 3
Query:  147 KLQKEQQKRRDAARLRIQREKRAKEAAARDQARIEEQIKSRKLEQRXXXXXXXXXXEADLIRTAGVSYKKSLVAVTAEGEGDKILLPPSALESLSAQDAVGLGPMLFELTGTSTARTSAGHEAAATEGKKNAAIQSAPSTTTRTTHAGVLEFVADEGTVGLPRKVVLSLLGATAQQVPLRSNQESNEGQENEAANRTAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYVNVWRRGKEFSMKVVELRPEPQVTVIDTDMEIELDLPEKAREQLEE 1040
            KLQKEQ++R++ ARL+++R       A + +  IE   +SR+L+            E  L+   G+ + ++L AV  +G GDKI LPPS    LS Q A   GP+ F+LT T        H+    EG  N  I +A     RTTH+GVLEF ADEGTVG+P  V  +L       + L                         + VRYV L K T+A++ P+ +G S +   +A+LE ++R HATL+  D   V      + ++V+EL+P   V+V++TD+E+++  P+ + E+ E+
Sbjct:   11 KLQKEQKERKERARLKLERXXXXXXXAKKQREAIETVQRSRRLDAAEAQLKAEQQKEESLLAGRGIMFYRALEAVPFQGNGDKIKLPPSCFTELSDQGAFDKGPLYFQLTLT--------HQ----EGSSN--INAADKINGRTTHSGVLEFTADEGTVGVPPHVWQNLFPTNTPNISL-------------------------IEVRYVWLPKGTYAKLQPDQLGFSDLPNHKAILETSLRQHATLSEDDIFTVNYGELIYKLQVLELKPSSSVSVLETDIEVDIVGPDSSLERTEQ 269          
BLAST of mRNA_P-littoralis_Contig172.2.1 vs. uniprot
Match: W7T6G4_9STRA (Ubiquitin fusion degradaton n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6G4_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.680e-29
Identity = 109/324 (33.64%), Postives = 147/324 (45.37%), Query Frame = 3
Query:  573 RTTHAGVLEFVADEGTVGLPRKVVLSLLGATAQQVP-----LRSNQESNEGQENEAANRTAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYVNVWRRGKEFSMKVVELRPEPQVTVIDTDMEIELDLPEKAREQLEEKGAQDRAKTLRAHMDAAKPPGSSPGGSLSPTPTVVMGVGGQVLGGSGTATSSFSPMDDGEXXXXXXXXXXXDRTNGGAKNTFDPVKHRLAKFQELPEEPRRDEEDVFTCQLRSPEGKF-TRRFRFGDPLGVLLDFAESQGGVPGQ------YRLVVPFPRRVF 1508
            R THAGVLEF A++G +GLP KV  SL     +        +    E   G+E ++   +A      V V+YVRL K T+A+V P T  L  V EL+ MLE N++NHATL+ GD + VW RG+ F ++V+ L P   VTVIDTD+ +++++PE   EQ E +  + R  T     DA                    GV GQV+GG G         +                 N GAK          A+  +L  EP     D     +R P+G   +RRF    P   +  F E+             YRLV  FPRRVF
Sbjct:   23 RVTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDVEVPE---EQTERERVEKRLST-----DAG-------------------GVKGQVVGGGGPPPRVSQSCES----RGQEAGMEESSVNSGAKEEERRKSMIAAQLSKLAPEPDEGNGDWIALVVRKPDGSMISRRFLRSQPFQDVFRFVEATSVSSDHDRLHMTYRLVTRFPRRVF 315          
BLAST of mRNA_P-littoralis_Contig172.2.1 vs. uniprot
Match: K3WWI9_GLOUD (UBX domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWI9_GLOUD)

HSP 1 Score: 134 bits (336), Expect = 1.700e-29
Identity = 121/306 (39.54%), Postives = 168/306 (54.90%), Query Frame = 3
Query:  123 LNLDSRGSKLQKEQQKRRDAARLRIQREKRAKEAAARDQARIEEQIKSRKLEQRXXXXXXXXXXEADLIR-TAGVSYKKSLVAVTAEGEGDKILLPPSALESLSAQDAVGLGPMLFELTGTSTARTSAGHEAAATEGKKNAAIQSAPSTTTRTTHAGVLEFVADEGTVGLPRKVVLSL---LGATAQQVPLRSNQESNEGQENEAANRTAVEGLENVVVRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMRNHATLTVGDYVNVWRRGKE-FSMKVVELRPEPQVTVIDTDMEIELDLPEKA 1022
            ++L++RG+K +KE+QKRRDAA+ ++Q E+  K AAA    R  E+++++K    XXX         +  R T G+ Y + L  V A  +GDKI LP SALE L+ Q+A  LG   FEL           +E   T+             TTR THAGVLEFVA+EGTVGLP KV  SL   LG ++  V          GQ  EA           + V+Y+RL K  FA + P  VG  +   + + +LE +++ H TLTVGD + V R GKE F + V EL+PE  V +++TD+E+ L LP +A
Sbjct:    3 MDLNTRGAKWKKEEQKRRDAAKRKLQTEQ-LKRAAADKVQREMERVQAQKXXXXXXXQAQLEELALEEQRVTGGIKYLQRLRPVPAVTDGDKITLPVSALEELNPQNAHELGVFTFELL----------YEDPLTQ-------------TTRKTHAGVLEFVAEEGTVGLPPKVAASLFRNLGGSSNSV----------GQVPEA-----------IQVKYIRLEKGKFASLQPRGVGFGEREIDFKKILERSLKAHTTLTVGDVLFV-RHGKETFEVLVAELQPEAAVNILNTDLEVAL-LPSEA 261          
BLAST of mRNA_P-littoralis_Contig172.2.1 vs. uniprot
Match: R0GH48_9BRAS (Uncharacterized protein n=2 Tax=Capsella rubella TaxID=81985 RepID=R0GH48_9BRAS)

HSP 1 Score: 134 bits (338), Expect = 3.670e-29
Identity = 99/299 (33.11%), Postives = 157/299 (52.51%), Query Frame = 3
Query:  123 LNLDSRGSKLQKEQQKRRDAARLRIQREKRAKEAAARDQARIEEQIKSRKLEQRXXXXXXXXXXEADLIRTAGVSYKKSLVAVTAEGEGDKILLPPSALESLSAQDAVGLGPMLFELTGTSTARTSAGHEAAATEGKKNAAIQSAPSTTTRTTHAGVLEFVADEGTVGLPRKVVLSLLGA-TAQQVPLRSNQESNEGQENEAANRTAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYVNVWRRGKEFSMKVVELRPEPQVTVIDTDMEIELDLPE 1016
              L S   KL++EQ++R+  A+L++ REK+AKEAA R +  IE   ++R+L+            +  LI   G+ +++   AV  +G GDKI LPPS    LS Q A   GP+ FEL+        A H     + KK             TTH+GVLEF A++GTVGLP  V  +L  +  A  VPL                         V +RY+RL K ++A++ P+ +G S +   +A+LE  +R HATL++ D ++V      + ++V+EL+P   ++V++TD+E+++  P+
Sbjct:  148 FELRSAKEKLEREQRERKQRAKLKLDREKKAKEAAIRQREAIEASQRARRLDAIEAQIKADQHMQESLISGDGIVFERVFQAVPFQGNGDKIKLPPSCFTELSDQGAFDKGPLYFELS-------VADHS----DNKK-------------TTHSGVLEFTAEDGTVGLPPHVWSNLFSSHDAVDVPL-------------------------VEIRYIRLPKGSYAKLQPDNLGFSDLPNHKAILETILRQHATLSLDDVLSVNYGQVSYKLQVLELKPASSISVLETDIEVDIVSPD 397          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig172.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT74_ECTSI1.370e-20570.10UBX domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9CT31_9STRA6.670e-4534.41UBX domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A5C7HE24_9ROSI6.090e-3134.01Uncharacterized protein n=1 Tax=Acer yangbiense Ta... [more]
A0A662YG13_9STRA1.050e-3038.36UBX domain-containing protein n=1 Tax=Nothophytoph... [more]
A0A834YT92_9MAGN2.640e-3033.22Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
A0A7S3XVE0_HETAK6.240e-3051.45Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8K0MER5_9ROSA6.390e-3033.89Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
W7T6G4_9STRA1.680e-2933.64Ubiquitin fusion degradaton n=1 Tax=Nannochloropsi... [more]
K3WWI9_GLOUD1.700e-2939.54UBX domain-containing protein n=1 Tax=Globisporang... [more]
R0GH48_9BRAS3.670e-2933.11Uncharacterized protein n=2 Tax=Capsella rubella T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig172contigP-littoralis_Contig172:35994..42580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT74
Preferred nameubxn8
PFAMsUBX,UFD1
Model size2115
Max annot lvl2759|Eukaryota
KEGG koko:K14016,ko:K18726
KEGG Pathwayko04141,map04141
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.06e-210
EggNOG OGsCOG5140@1|root,KOG1363@1|root,KOG1363@2759|Eukaryota,KOG1816@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin fusion degradation protein UFD1
Ec32 orthologEc-06_003840.1
DescriptionER-associated misfolded protein catabolic process
Cds size1485
COG categoryO
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig172.2.1prot_P-littoralis_Contig172.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig172 36514..42470 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789832.179011-UTR-P-littoralis_Contig172:35993..365131680789832.179011-UTR-P-littoralis_Contig172:35993..36513Pylaiella littoralis U1_48UTRP-littoralis_Contig172 35994..36513 -
1680789832.235413-UTR-P-littoralis_Contig172:42470..425801680789832.235413-UTR-P-littoralis_Contig172:42470..42580Pylaiella littoralis U1_48UTRP-littoralis_Contig172 42471..42580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789832.1975663-CDS-P-littoralis_Contig172:36513..371671680789832.1975663-CDS-P-littoralis_Contig172:36513..37167Pylaiella littoralis U1_48CDSP-littoralis_Contig172 36514..37167 -
1680789832.2094712-CDS-P-littoralis_Contig172:38130..387721680789832.2094712-CDS-P-littoralis_Contig172:38130..38772Pylaiella littoralis U1_48CDSP-littoralis_Contig172 38131..38772 -
1680789832.2184422-CDS-P-littoralis_Contig172:41999..421591680789832.2184422-CDS-P-littoralis_Contig172:41999..42159Pylaiella littoralis U1_48CDSP-littoralis_Contig172 42000..42159 -
1680789832.226955-CDS-P-littoralis_Contig172:42441..424701680789832.226955-CDS-P-littoralis_Contig172:42441..42470Pylaiella littoralis U1_48CDSP-littoralis_Contig172 42442..42470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig172.2.1

>prot_P-littoralis_Contig172.2.1 ID=prot_P-littoralis_Contig172.2.1|Name=mRNA_P-littoralis_Contig172.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=495bp
MADFLNLDSRGSKLQKEQQKRRDAARLRIQREKRAKEAAARDQARIEEQI
KSRKLEQRRKEEEARKLEEADLIRTAGVSYKKSLVAVTAEGEGDKILLPP
SALESLSAQDAVGLGPMLFELTGTSTARTSAGHEAAATEGKKNAAIQSAP
STTTRTTHAGVLEFVADEGTVGLPRKVVLSLLGATAQQVPLRSNQESNEG
QENEAANRTAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLE
HNMRNHATLTVGDYVNVWRRGKEFSMKVVELRPEPQVTVIDTDMEIELDL
PEKAREQLEEKGAQDRAKTLRAHMDAAKPPGSSPGGSLSPTPTVVMGVGG
QVLGGSGTATSSFSPMDDGEDDDDSDADSDDDRTNGGAKNTFDPVKHRLA
KFQELPEEPRRDEEDVFTCQLRSPEGKFTRRFRFGDPLGVLLDFAESQGG
VPGQYRLVVPFPRRVFLRDDASSRTTLREAGLTSRQESVILERL*
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mRNA from alignment at P-littoralis_Contig172:35994..42580-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig172.2.1 ID=mRNA_P-littoralis_Contig172.2.1|Name=mRNA_P-littoralis_Contig172.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6587bp|location=Sequence derived from alignment at P-littoralis_Contig172:35994..42580- (Pylaiella littoralis U1_48)
GCGGCGACTTTCGACTTTCTTATTCAGGCCACCTCACGGCTCACGGCACC AGTACCTACACTGCTACGGACGGAGGTGGAGGAAGCAAGCTTTGTGAACT TGGTGAAGCTATGGCGGACTTCCTCAATTTAGATTCCAGGTATCAATGTA CAGCAGTAGCAGTGCCGTTAGGAAAGCGAATCAGCAGCAGCAACAGACCG CGGCCGAGTTTCGTTCACCTTCAGCAGTATGAGGCAGAGGGAAGCAGGGG CACCTCCCTGCCAGCTGGAATATGATGGCTAGTTTTTCCTTTTCGGTACT TCGGGTCCTCCACAAAAGGAGCAAGACACATGCACCAAATTGCTGTCTGC CTCCAGCTCCAAACCCCTCGCCTTCCCATGTTTCCAATTTACGTGGTTCA CCCACCTACCTGCAAGTACAGAGGCAGCAAACTCCAGAAGGAGCAACAAA AACGCCGGGACGCCGCGAGGCTGAGAATTCAGAGAGAAAAGAGGGCTAAG GAGGCGGCCGCAAGGGACCAGGCGAGAATCGAGGAACAGATCAAGTCGAG AAAGCTCGAGCAGCGTCGGAAAGAAGAAGAGGTGGGTCTCACACACACAC TGCTACAAGCACTAAATACTCCGTCTGTACTTGTACGTATTTTGCCCCCA GTGCCTCTTCTGCGGGGGTTGTCCGTCGCGTTCAACAAACACACTTTTCG AAGTACCAGGTAGGAGAGTCTGAGAGGTAGTTCACGTATGTTTAACCCTT CTGGGACCAGGGTGTTTTGTTCCTTTTCACACGGACAGCCCGGGTTCCAA ATCAGAACCATACGATGTTCCTCCGAGAAAAAAAATATGGCTCAAATGTC CCTTTCAAATGTACAGCAGTCACGAAACCAAGAGAAAATGTACACAACCG CACCACAAAGATATACAGCCAGGGCCCCTGACGGGGGCTCACAGCGGGCT GGTTACGTCCCTGGAGAGTACATAAGGGATATCCGGTGGTCGAGATGCCG CGGCTAGCTCTCAGGCGTCGTGCAACGTGTTCTAACCATCAATAGCGCTT AAAGTATCCAGTCCTCTCAAAACAAGATAATAAGGAAAAATATTTACTGC TAAGGAGTTACTCGTTTCCCGCTGTAGCTCCCGGCCTGCTGAACGTACTT TTGGATAGGGGCCCCGTGGCCTGCGGCCGGCATGAAGGCCGGTCCTTCCT TCTCGCACATACAGGCACATCATTGGTACTGGTAGCGGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGTAGTAGTATTCTAGCAACTAATCTCATGCATC TACATATCTACATACATGCTGCTGCTGCTGTTGTCGCTGGGTTCTGACCA AACAAGATACCTGGTACTCTCGAAGGTACGGAGTAATAAATAAGATACCA CGATGTATCATACATAGAGGTATGACTCTCTACTACTAATGCTCTTGTTG CTTGTTGTGTCATACCAACAAGGGAGGAGGTATCACATGGCATGTGATGT ACTGCTGTACAGCAGCGACAGTAGCAGTAGTTTGTTGTAGTAGGGTAGTG CCACTATAATGCTGGTGTGGTGTTGCACTCCAGAAAATTACGATACACTG CACCCTCACACCCCTTGACCACACACACAGCAGCAGCTGTGAGCGGTGTT TGTTTGTCCTCTTGCCCGTATCTGAGTGTAGCCGGACTGCTGCTCAACTC CCAACGTGATGGGGTTCGGGAATTTTTTGTTTCTGTCCCCGTCCCGAAGA GACTGGCTTATACTCCGGAGTATAAAAAAAATAAAATATTTTGGTTAATT GTTTTGATGCATTTATCACCTCAGAAGTTCCAGAAGGGTTAACCTGGTGC TTGTGAGGGGATTATCCCGCGCGTCTATTATAGTACTTCGTATGATACGA TTTGACTAAAGTGCGATCTTCGTCACTGACCAATATCAAAGATTTACACC AGCGGAACATGTGGGCTTCGTGTCGCGTGTCGTATGGCATCTCTCCCTGT TTCTGCTGTTATGGGTGCATTCGGTCCCTGCTGTGAGTGCACACATACAT ACACACCAAGGAAGGAGGTTCTCAAAGGGAACCGATATGAACCATAGCAT ACCGCCCTTCTTCATCTCCAGCTTTTTTCATCACACGCCTACGTTGTGAA ATACAAGTACTTTGTGGGCAGACTCCAGAAAGCGGTATACCGCCTGGTTT CCGCGCCACCAAGCGGTACACCAAAATACACCTTGGCATTTGAGCCCGTT TCGGTCTCTGATTGGCGAAGTAAGCTCTGTACCGCTTTCTAGAATCAGAC TGTGGCGGTATACCGCTCCGAGGCTTCTCAGGTCGATTCGTACCTTTTGG CATGGGGTGTACCGACTTCTGGCGCGGGCCTGGTGGGGCCATAGCACACC CAGCGGAATATTTCCGAGACCGTCAGCGCCAATAGAATTTGGAAGAGATT TCGAGAAGGGACGAGAAAGTTCACTCCACAACCCACGCATCCACGTCATG TCCGTTATGTCACGGACATATCATATCAACTCAGATCTTCTCCGCACGCT GTCTACACACCAGACAGGTAGACTTCTTCGTCCTTTCGGCCAAAGGTATG CAAGAGATGGACCTGTATGTTGCACACATTGCACGGCTATCGTGCACAGA TGGACTGGCTCTCACGATCTTCTTTTTGAAAGGCTGATAGTCCTCCTGCC GGCATCAAAGCTGTGACTGCACATACCCAACACATCATACCCCCCTACCC ACGTCGCGATGGCGACAAACCAACCACCCCAAATAATAGTTGTTGGCTTC ATCACAAACTACAATGTATGTCTACGCGAGCTCGGAGCGATATTTCGTTG CCGAGGGGCGCTCCATCGTGGCCGGCAAAGGCGGCAGGCGGCAGCGTATG TATTGTTGTGATCATTCGAAGAGGGTTGCACGGCCCACCTTCGGTGGACT AAGCGAACTCAGGGCGCGTGAAAGGTATCGCCCTGTAGAACTGTCAGCCT TTCAAGCAGCATGGAGAGATCGAGCCATGCTGTCTGTGCACGATAGCCGT CCAATGCGTGCAACGTGCAGCTTCATCTCTTGAACACTATTGGCCGAGAG GACGGAGAAGCCTACCTGTCTGGTGTGCAGATAGCGTGCCGCGAAGATCT GAGTTGATATGTTCGTGACATGATTGAGACATGACGTGGCTGCGTTGGTT GTGGAGAGAAATTTCTCGTCCCTTCTCGAAATTCCTTCCAATTTATTTTT GGCGCTAACGGTCTCAGCAATATTCCGCTGGGTGTGCTGTGGCTCCACTA GACCCGCGCCAGAATTCTGTACAACCCATGCCAAAAAACGGTACGAATCG ACCTGAGAAGCCTCGGAATGATATACCGCCACAGTCTGATGCTAGAAAGC GGTACAGGGCTTAATTTTTAATCACCGACGCTAAAGGGGCTTAAATGCCA AGGTGTATTTTGGTGTACCGCTTGGTGGCGCCGAAACCAGGCAGTATACC GCTTTCTGGCGTCTGCCCTTTTGACATCTACGCTTCACTCGTTTTTTATG AATGCGTGCGCCATTCCCTCACCAGAGTTTTTTCACAAGCGCTCACGTTG TGGCTGTGACTGCCCGAAACGCGTTCGTTGTGGCGAAACCGCCATGGTGA ATCCTTAGACCTGTTCCCCATATTCACTCGATCGAACCACGGCCGCAACC GCCGTCGTGTTGTTGTTGATTGTGGGTGTTCGAGATTTGCTGCTGCATTC GTTTTTGAATCATACTCATCCCTGTATTGCAATCTGCAAACCCTCTCCAA TTCGACAGGCGAGGAAGCTGGAAGAGGCGGACCTAATTAGAACCGCGGGC GTCAGCTACAAGAAGTCCCTTGTGGCGGTCACAGCAGAGGGAGAGGGGGA CAAGATCCTCCTGCCGCCGTCCGCGCTGGAGTCTCTCTCCGCCCAGGACG CTGTCGGCTTGGGACCTATGCTGTTCGAGCTTACCGGTACTTCTACCGCT AGAACTTCTGCTGGTCACGAGGCGGCAGCCACGGAAGGGAAAAAAAACGC CGCAATACAAAGCGCACCGTCAACAACAACACGAACAACCCACGCCGGTG TATTGGAATTCGTTGCGGATGAAGGCACCGTCGGGCTTCCTCGGAAAGTG GTGCTGAGCCTTCTGGGGGCAACAGCGCAACAGGTACCACTTCGATCAAA TCAAGAATCAAACGAGGGCCAAGAAAATGAAGCGGCCAATAGGACAGCCG TGGAGGGGCTCGAGAACGTGGTCGTGCGCTACGTTCGCCTCGCCAAAGCC ACATTTGCACGAGTGGTTCCCGAAACGGTCGGGTTGTCGCAGGTGTCAGA GCTGAGGGCAATGCTGGAGCACAATATGCGTAACCACGCGACGCTAACGG TAGGGGACTACGTGAACGTGTGGAGACGTGGAAAGGAGTTCAGCATGAAG GTGAGCGCGGTACTTTGAGTGAGGGCGTTGTGTCTCGTGCTTCTCGTTTT CCTACTTGGATGATCGAGGCCAAGGGAGGCTCCAGCGCCGGCTCCGCCCC AAGTTAGCAATAATTGACTCAGGGGAAGCTAAGAAGAGACGAATCGGCCC GGTTGTGAGGGTTTACGGGCTGGAGTTGGCGGAAACCCTGTCCTTCGCAA GAGAGTGCCACCTCACCGTTTTGGCCGGTATGGGGATAGTTCGCCCAAGA ACACAACGGGCTGTGACTCTTCACCCACGGGTGGGTAATCGAGGCACTGC TTGCGGGGGCTTGTATCCTGGGCGTTGCTGTTTGCTGCTTCATCGATATC TCTCAAATAGTTCGTCCGTGAACGCCATGCTACATTTGCCGGGTCACTTG GTTCTCTTTAAACGAATAAAAAGAATGGGAGAAAACAAATCAAACAATAA TTCCGAGATAGTTGAATTTCGGTCGTGGAAGAGGGTCCAGCTGTCCTTCC ATTTACACGGGTCCTTCGGGACCCACTTAACCGGGTTGATCCCGGTTTTT CATCGGTTGTGCAAGCCAAGGGTTCGAATAATATACGGTCCTCCGGTACC GAGCTGTGTCGTGTCAATGTGTCCGAGTGTGTGTTATGTGCCGTACAAGG CGTTGTCAACATTCAACATCGGCGTGTTCAAAGCACGTGTTTATATTTCT ACATGTTTGGACGACCGAACGCACACAAAGTGTATGCGCGTCCGTAGTGA GATCGCCACTGCGTTTGAGGTTCCAAATTTGATGAAGCGCTGGAGTCTTG TTTGTTCTTCGCTGGTAGCGCGGCGAGGAAAGCTCTACACAAGGAGGGAT TCGCTGCTTCGTTGCACCGCTATCTTCTACATGCGCACAGACTCGTTTGA TTCTTTGCCCATTTTCTTCGCCACGGATAATGAAATCCCTCCTCCACCCT CTAAAATGTCCAGGTTGTGGAGCTTCGCCCGGAGCCTCAGGTAACGGTTA TCGACACGGATATGGAAATAGAGCTCGACTTGCCGGAAAAGGCGAGAGAG CAACTCGAAGAAAAGGGTGCCCAGGACCGAGCGAAGACGTTGCGAGCACA CATGGACGCGGCAAAACCGCCCGGCTCTTCTCCGGGAGGAAGTTTGTCAC CGACGCCGACGGTCGTAATGGGAGTAGGAGGGCAAGTGTTGGGAGGCAGC GGTACTGCTACCAGTAGCTTTTCCCCAATGGATGACGGCGAAGATGACGA TGATTCAGATGCCGACTCCGATGACGACAGAACTAATGGTGGCGCTAAAA ACACATTTGATCCCGTAAAGCACCGCTTAGCCAAATTTCAGGAACTCCCG GAGGAGCCTCGTCGGGACGAAGAAGACGTATTTACGTGCCAGCTTCGGAG TCCAGAGGGGAAGTTCACCAGACGTTTTCGCTTCGGAGACCCCCTCGGGG TGCTGTTGGATTTCGCCGAATCCCAAGGCGGTGTGCCGGGACAGTACAGG CTAGTTGTGCCGTTTCCTAGGCGAGTGTTTCTGAGAGATGATGCGTCGTC GCGCACGACGTTGCGTGAAGCAGGGCTTACGTCGAGACAGGAATCGGTGA TTTTGGAGAGACTCTAGTGTATGCGGGGCTTACGTCTAGCAGCCAGATAT ATTTTTAGTGTATGTGGGGCTTGTTGTCCCTGTCGCGATAGAGCCGCGGA CGCCGTGGTAGTCATGACTAGTCCATCTTTTGCTTTGGGTGTGTCGATGT GAACCTTGGAAGAATGTAGAAATTGTGGTGTCTAGCGAAGGCTCTCAGCG GGTGCCTTGTGACACTATTTGTTCATGCTGTCTGTCTGAGCCAATGTACA TACAGTCCGTTTGTCTGTCGTGTGTCTGTCGTGAGCTTCATGTCTGTAAA GTTCTCACGAGCGCTCTTTGAAGCGCGGCAATCCTGGGGAACAAATACCG TAGGTGTGTACCATATTTGAGGATAGATGCTGGAAGCAGTATTGAAGTGG GTACAGAGCAGCAAAAAGTACGGAGTGTCAGCTTCGATCTACGTGATATA TTGCAGTTAACACAAGCGACGGAACCCGCTATTAAAATTCACAAGAGTGC CACGGTGCGCATTTGCTCGCGGTGCGCATTTGCTCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig172:35994..42580-

>mRNA_P-littoralis_Contig172.2.1 ID=mRNA_P-littoralis_Contig172.2.1|Name=mRNA_P-littoralis_Contig172.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1485bp|location=Sequence derived from alignment at P-littoralis_Contig172:35994..42580- (Pylaiella littoralis U1_48)
ATGGCGGACTTCCTCAATTTAGATTCCAGAGGCAGCAAACTCCAGAAGGA
GCAACAAAAACGCCGGGACGCCGCGAGGCTGAGAATTCAGAGAGAAAAGA
GGGCTAAGGAGGCGGCCGCAAGGGACCAGGCGAGAATCGAGGAACAGATC
AAGTCGAGAAAGCTCGAGCAGCGTCGGAAAGAAGAAGAGGCGAGGAAGCT
GGAAGAGGCGGACCTAATTAGAACCGCGGGCGTCAGCTACAAGAAGTCCC
TTGTGGCGGTCACAGCAGAGGGAGAGGGGGACAAGATCCTCCTGCCGCCG
TCCGCGCTGGAGTCTCTCTCCGCCCAGGACGCTGTCGGCTTGGGACCTAT
GCTGTTCGAGCTTACCGGTACTTCTACCGCTAGAACTTCTGCTGGTCACG
AGGCGGCAGCCACGGAAGGGAAAAAAAACGCCGCAATACAAAGCGCACCG
TCAACAACAACACGAACAACCCACGCCGGTGTATTGGAATTCGTTGCGGA
TGAAGGCACCGTCGGGCTTCCTCGGAAAGTGGTGCTGAGCCTTCTGGGGG
CAACAGCGCAACAGGTACCACTTCGATCAAATCAAGAATCAAACGAGGGC
CAAGAAAATGAAGCGGCCAATAGGACAGCCGTGGAGGGGCTCGAGAACGT
GGTCGTGCGCTACGTTCGCCTCGCCAAAGCCACATTTGCACGAGTGGTTC
CCGAAACGGTCGGGTTGTCGCAGGTGTCAGAGCTGAGGGCAATGCTGGAG
CACAATATGCGTAACCACGCGACGCTAACGGTAGGGGACTACGTGAACGT
GTGGAGACGTGGAAAGGAGTTCAGCATGAAGGTTGTGGAGCTTCGCCCGG
AGCCTCAGGTAACGGTTATCGACACGGATATGGAAATAGAGCTCGACTTG
CCGGAAAAGGCGAGAGAGCAACTCGAAGAAAAGGGTGCCCAGGACCGAGC
GAAGACGTTGCGAGCACACATGGACGCGGCAAAACCGCCCGGCTCTTCTC
CGGGAGGAAGTTTGTCACCGACGCCGACGGTCGTAATGGGAGTAGGAGGG
CAAGTGTTGGGAGGCAGCGGTACTGCTACCAGTAGCTTTTCCCCAATGGA
TGACGGCGAAGATGACGATGATTCAGATGCCGACTCCGATGACGACAGAA
CTAATGGTGGCGCTAAAAACACATTTGATCCCGTAAAGCACCGCTTAGCC
AAATTTCAGGAACTCCCGGAGGAGCCTCGTCGGGACGAAGAAGACGTATT
TACGTGCCAGCTTCGGAGTCCAGAGGGGAAGTTCACCAGACGTTTTCGCT
TCGGAGACCCCCTCGGGGTGCTGTTGGATTTCGCCGAATCCCAAGGCGGT
GTGCCGGGACAGTACAGGCTAGTTGTGCCGTTTCCTAGGCGAGTGTTTCT
GAGAGATGATGCGTCGTCGCGCACGACGTTGCGTGAAGCAGGGCTTACGT
CGAGACAGGAATCGGTGATTTTGGAGAGACTCTAG
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