mRNA_P-littoralis_Contig172.16.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Match: A0A6H5JBS7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS7_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 3.780e-12 Identity = 54/89 (60.67%), Postives = 61/89 (68.54%), Query Frame = 1
Query: 190 VGGICDCGQNAVFSQPASPSPASVPIRWVPVCGRCGKNGHMAMHCTAPRRFEGXXXXXXXXXXXXXXXXXSRGFGAGHPHDSVETTSGA 456
VGGI DCG NAV+ QP S P P+ V CGRCG+N H A+ C APRRFEG XXXXXXXXXXXXXX S HPH +V T++GA
Sbjct: 364 VGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCGRNDHHAIDCAAPRRFEGTXXXXXXXXXXXXXXAKSNR----HPHLNVVTSAGA 448
BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 2.520e-11 Identity = 54/89 (60.67%), Postives = 62/89 (69.66%), Query Frame = 1
Query: 190 VGGICDCGQNAVFSQPASPSPASVPIRWVPVCGRCGKNGHMAMHCTAPRRFEGXXXXXXXXXXXXXXXXXSRGFGAGHPHDSVETTSGA 456
VGGI DCG NAV+ QP S P P+ V CGRC ++GH A+ C APRRFEG XXXXXXXXXXXXXXX S HPH +V T++GA
Sbjct: 478 VGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCERHGHHAIDCAAPRRFEGTXXXXXXXXXXXXXXXKSNR----HPHLNVVTSAGA 562
BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 1.590e-10 Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 190 VGGICDCGQNAVFSQPASPSPASVPIRWVPVCGRCGKNGHMAMHCTAPRRFEG 348
VGGI DCG NAV+ QP S P P+ V C RCG++GH A+ C APRRFEG
Sbjct: 234 VGGIYDCGSNAVYHQPESLPPPGAPMSTVHRCCRCGRHGHHAIDCAAPRRFEG 286
BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Match: A0A6H5JU47_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU47_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 2.680e-8 Identity = 52/89 (58.43%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 190 VGGICDCGQNAVFSQPASPSPASVPIRWVPVCGRCGKNGHMAMHCTAPRRFEGXXXXXXXXXXXXXXXXXSRGFGAGHPHDSVETTSGA 456
VGGI DCG NAV+ QP S P P+ V CGR H A+ C APRRFEG XXXXXXXXXXXXXXX S HPH +V T++GA
Sbjct: 364 VGGIYDCGSNAVYHQPKSLPPPGAPMGIVHRCGRXXXXXHHAIGCAAPRRFEGTXXXXXXXXXXXXXXXKSNR----HPHLNVVTSAGA 448
BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Match: A0A6H5JN41_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN41_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 1.030e-7 Identity = 51/89 (57.30%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 190 VGGICDCGQNAVFSQPASPSPASVPIRWVPVCGRCGKNGHMAMHCTAPRRFEGXXXXXXXXXXXXXXXXXSRGFGAGHPHDSVETTSGA 456
VGG+ DCG NAV QP S P P+ V CGR H A+ C APRRFEG XXXXXXXXXXXXXXX S HPH +V T++GA
Sbjct: 436 VGGVYDCGSNAVSHQPESLPPPGTPMGTVHRCGRXXXXXHHAIDCAAPRRFEGTXXXXXXXXXXXXXXXKSNR----HPHLNVVTSAGA 520
BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Match: A0A6H5JBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBM3_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 4.590e-7 Identity = 38/101 (37.62%), Postives = 46/101 (45.54%), Query Frame = 1
Query: 154 QRPSSSGEFQLEVGGICDCGQNAVFSQPASPSPASVPIRWVPVCGRCGKNGHMAMHCTAPRRFEGXXXXXXXXXXXXXXXXXSRGFGAGHPHDSVETTSGA 456
Q+P+ G VGGI DCG NAV+ QP SP P P+ V C A+ C APRRFEG S HPH +V T++GA
Sbjct: 115 QQPAMDG-----VGGIYDCGCNAVYHQPESPPPPGAPMGTVHRCXXXXXXXXXAIDCAAPRRFEGTSGACDQYGHMWRNCAKSNR----HPHLNVVTSAGA 206
BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 1.230e-6 Identity = 50/89 (56.18%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 190 VGGICDCGQNAVFSQPASPSPASVPIRWVPVCGRCGKNGHMAMHCTAPRRFEGXXXXXXXXXXXXXXXXXSRGFGAGHPHDSVETTSGA 456
VGGI DCG +AV+ QP S P P+ V CGR A+ C APRRFEG XXXXXXXXXXXXXXX S HPH +V T++GA
Sbjct: 436 VGGIYDCGSDAVYHQPESLPPPDAPMGTVHRCGRXXXXXXHAIDCAAPRRFEGTXXXXXXXXXXXXXXXKSNR----HPHLNVVTSAGA 520 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig172.16.1 >prot_P-littoralis_Contig172.16.1 ID=prot_P-littoralis_Contig172.16.1|Name=mRNA_P-littoralis_Contig172.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp QQRRGGRAGRHRESDRVTAGNSRGQRQRQQWSNRGGPPQQPQQQQQQHCVback to top mRNA from alignment at P-littoralis_Contig172:89500..89968+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig172.16.1 ID=mRNA_P-littoralis_Contig172.16.1|Name=mRNA_P-littoralis_Contig172.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=469bp|location=Sequence derived from alignment at P-littoralis_Contig172:89500..89968+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig172:89500..89968+ >mRNA_P-littoralis_Contig172.16.1 ID=mRNA_P-littoralis_Contig172.16.1|Name=mRNA_P-littoralis_Contig172.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig172:89500..89968+ (Pylaiella littoralis U1_48)back to top |