mRNA_P-littoralis_Contig171.94.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.94.1
Unique NamemRNA_P-littoralis_Contig171.94.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig171.94.1 vs. uniprot
Match: D7G1W8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W8_ECTSI)

HSP 1 Score: 332 bits (850), Expect = 4.660e-109
Identity = 197/337 (58.46%), Postives = 243/337 (72.11%), Query Frame = 1 
Query:   97 MYLVTFVVLASAIGGAFVIRRSLLSEARPTQR-LERRGSILAQRMAEVRRTQQSSSPEDRRXXXXXXXXPVGEXXXXXXXXXXXXXXQEEGVRPLSRRSFLAVADTASTPSPPPREDSPLLGNKKP----SRTASVMAL-----DGDGGSSGEKKDTIVDWSYM--EGISPVSGGSEYG-SEAGSKRTTISAAPTTLSAADEALLGTFMDVLAEGLPIKIHRSSKRPRKTTLWLQDSDTLAWTTKRAIGTKRWHKLKLSAMIRVEAGKGGANSLIIGSGEAADEDVCFSLTFPYVSMGFEATSQLERDALVQGFAMLAEDLQAVADERRYLDTEARV 1068
            ++L  F ++A A GGAF++RRS+L+E  P+QR L R  S+LA+RMAEVRRTQQS SPE+RR         VG   XXXX           G RPLSRRSFL   D+   P  PPREDSPLLG++      S +A V+AL            GEKK+   DW+ +  E +  V GGS+ G S+AGS++TT+SAAPTTLSAADEALLGTFM+VL+EGLPIKIHR+SKR RKTTLWL+ +DTL W++KRAIG+K+WHK  L  +  V+AGKGG++SLIIGSGE+A ED CFSL FP VSMGFEA S+LERDALVQGFAML ED++A ADE++Y DTEA +
Sbjct:    3 VFLFIFGLVALAAGGAFLVRRSVLAEPEPSQRRLARPPSVLAERMAEVRRTQQSLSPEERRQSTRRHRVGVGTSGXXXXNSSGTKYGDGRGPRPLSRRSFLMSDDSTGGPPSPPREDSPLLGSRTERSPQSSSAGVLALAXXXXXXXXXQKGEKKNATGDWAGVDVENVVQVPGGSDLGDSDAGSRKTTVSAAPTTLSAADEALLGTFMEVLSEGLPIKIHRTSKRARKTTLWLKGADTLVWSSKRAIGSKQWHKQSLGGVTSVQAGKGGSDSLIIGSGESAPEDSCFSLCFPSVSMGFEAASELERDALVQGFAMLVEDIKAAADEQKYGDTEAAI 339
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BLAST of mRNA_P-littoralis_Contig171.94.1 vs. uniprot
Match: A0A7S2V636_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V636_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.120e-12
Identity = 63/185 (34.05%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:  541 VDWSYMEGISPVSGGSEYG------SEAGSKRTTISAAPTTLSAADEALLGTFMDVLAEGLPIKIHRSSKRPRKTTLWLQDSDT------------------LAWTTKRAIGTKRWHKLKLSAMIRVEAGKGGANSLIIGSGEAADEDVCFSLTFPYVSMGFEATSQLERDALVQGFAMLAEDLQ 1023
            V  S + G+S  +G    G      SE      T+ +  TT S    +L+ TF +VLAEGL + +H SS + ++  LWLQ                      L W    ++ ++R ++L LS ++ VE GK     L  GSG   DED C SL  P +S+ FEA+S++ER+A+ QGFA+L  D++
Sbjct:   62 VGQSSISGVSRTTGSRATGFSGDSSSETDMTVDTVDSTMTTQS--QPSLVDTFRNVLAEGLTMHLH-SSTQSKEVFLWLQGGPLPEDRGRRRSQSRAASPHLLCWRPTGSV-SRRAYQLDLSEVLFVEVGK-QTPVLRTGSGAGVDEDHCLSLITPNMSVDFEASSKVEREAMAQGFALLINDIK 241
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1W8_ECTSI4.660e-10958.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V636_9STRA2.120e-1234.05Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:305906..310946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1095
Hectar predicted targeting categorysignal anchor
Exons6
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-07_003850.1
Cds size1095
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.94.1prot_P-littoralis_Contig171.94.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 305906..310946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789830.2515783-CDS-P-littoralis_Contig171:305905..3060941680789830.2515783-CDS-P-littoralis_Contig171:305905..306094Pylaiella littoralis U1_48CDSP-littoralis_Contig171 305906..306094 +
1680789830.2671824-CDS-P-littoralis_Contig171:307902..3082751680789830.2671824-CDS-P-littoralis_Contig171:307902..308275Pylaiella littoralis U1_48CDSP-littoralis_Contig171 307903..308275 +
1680789830.2775133-CDS-P-littoralis_Contig171:308662..3088001680789830.2775133-CDS-P-littoralis_Contig171:308662..308800Pylaiella littoralis U1_48CDSP-littoralis_Contig171 308663..308800 +
1680789830.2879424-CDS-P-littoralis_Contig171:309151..3093031680789830.2879424-CDS-P-littoralis_Contig171:309151..309303Pylaiella littoralis U1_48CDSP-littoralis_Contig171 309152..309303 +
1680789830.3008275-CDS-P-littoralis_Contig171:309687..3098041680789830.3008275-CDS-P-littoralis_Contig171:309687..309804Pylaiella littoralis U1_48CDSP-littoralis_Contig171 309688..309804 +
1680789830.3210473-CDS-P-littoralis_Contig171:310820..3109461680789830.3210473-CDS-P-littoralis_Contig171:310820..310946Pylaiella littoralis U1_48CDSP-littoralis_Contig171 310821..310946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.94.1

>prot_P-littoralis_Contig171.94.1 ID=prot_P-littoralis_Contig171.94.1|Name=mRNA_P-littoralis_Contig171.94.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=365bp
RGSNLNTANPWRALGASNWRFVGITMEDGFDYMYLVTFVVLASAIGGAFV
IRRSLLSEARPTQRLERRGSILAQRMAEVRRTQQSSSPEDRRPDRRRQRK
PVGEEGVGGPGRGGAGRGQEEGVRPLSRRSFLAVADTASTPSPPPREDSP
LLGNKKPSRTASVMALDGDGGSSGEKKDTIVDWSYMEGISPVSGGSEYGS
EAGSKRTTISAAPTTLSAADEALLGTFMDVLAEGLPIKIHRSSKRPRKTT
LWLQDSDTLAWTTKRAIGTKRWHKLKLSAMIRVEAGKGGANSLIIGSGEA
ADEDVCFSLTFPYVSMGFEATSQLERDALVQGFAMLAEDLQAVADERRYL
DTEARVVPSDHLTV*
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mRNA from alignment at P-littoralis_Contig171:305906..310946+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.94.1 ID=mRNA_P-littoralis_Contig171.94.1|Name=mRNA_P-littoralis_Contig171.94.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5041bp|location=Sequence derived from alignment at P-littoralis_Contig171:305906..310946+ (Pylaiella littoralis U1_48)
CGTGGATCCAACTTGAACACGGCGAACCCCTGGCGGGCCCTGGGCGCATC
CAATTGGCGCTTTGTCGGGATAACGATGGAGGATGGCTTCGACTACATGT
ATCTTGTGACTTTCGTCGTGTTGGCATCAGCGATAGGGGGAGCCTTCGTC
ATCCGTCGCAGCTTACTCTCCGAAGCCCGACCAACCCAGGTGTGTGCTGC
ACTTTTCTGTTCGTAGATACGCTCCGTGTACTGCTTGTGAGGTTATAGGG
GCTAATCCTATACACTGCTATACATACACACATGAAGCTGGATATCCAGT
CTATGCACATATATTGGGTCGCACTCAGGCCCAATCTTATGGTAGATGGG
CAGCTGGAATTTCTCGAAAGCCTGATATTCCAAGTCGGACAATCAGACTG
GTGCCAACTTTATGGGAGAACTGGAAAATTTGGGCAGCGATTGGAAATCA
GATGGGGCTACCGGATGGACGGCAGGCGGTTTGGGCTATTTTCGATAAAC
TGTCGCTGACGGCGCAGAGCGGCGAGCGTTATCGCCAGCACGGCCAGGAT
CGCACGTCGCTTTGGTACCTGCACCTGGCCAGTGTGTTTGTGTGCACGGT
TGTTTGTATTTGCTTGTTGTGTGCTGTGAACCACTGCGGCGGAACCTCGT
GGCTGCGCGCGCGCGACGGATTCCAGGCCTGGAATCCAGGTCATTTGGCC
TGGAATCCGAGGGCAGATTCCAGGCGAGTCGCCTGGAATCCGGAGAACTG
GAAAATATGTCGCCTGGAATCCGGAGAACTGGAAAATATTTTCCAATTTC
GGCCGAAAACAACCCCCATAATAATAGAAATATTTTCCAGGCCTGGAATT
TGGATTCCAGTTCCTCATGTGAAACCCTTGGATTCCAGTTTTTGGCTCTA
CCATAAGAGTGGGCCTCATACATATGTGCAGCAGGGTCAACGCCGAATGC
GCCAATGGGGGGTGAGAGACGTACGTGCAAGTGTAGGCACAACAGGAAGG
CACACACTTTCCCGTCTGCACCATGCTTACAGTATAGTCTAGGCTTACAC
CGCCGAAGGTGGTGACCATCACCGGCGCTTGGCAATGGAGAGAACGATTT
CCGCATTAATGTGTTACAGCACTCGATAAGCTCTCACTTCGCTCGCAGAT
ACGATTCCATACGTAGTCGGCGGGCTGTGCTAGATTGCAACGTACGCTTA
TACTGTATACAGTAATATTGGTCGCCCCGGTGGTTCAGTTGCTTATCAAC
GCAACCTTCTGGCATCCACGCGTGAGTTCGAATCCCAGTGCAGTAACACG
ATCTGTTTTTTTTTCTCACATTGCGCGTGAAAGTGGAAAGCGATCGATTC
GTGAGTAAACAAAATTCGATCGTACCATCGATGAGGGAAAGGGATTGCAG
TCCCCTCTCTCGCGATAAAAGCTCAACCAAAAGGCAAGCATTGCAGAGGG
AAGTGGAGAAAAAAAAAAAACTCCTGTGTTGACTTCCCCCTGTGTGACCC
CGGTTGGAGCGTCTACCTACCCGAAAGGTGTAGAGTGGCGTCCAATTGAA
GGGATGACAACACACACACACAGTGTCGTGCCTCATGAGGAGGTATGATA
TGCGTCTGTAAGACCTATTAGTATCTCGTCGTCCTCAATGATTGATCCCA
CATTCCCCCGCCGCTTCAAACAGAAACCACACAGACCAATCATCATGTTG
GTCAGGGAACTCCCCGCTCCTCAGCGATACAAACACGCATGCCTGCCGAA
TGCAGAAATGAAACGAGTATGTCGATTTTGGTCTTGAACGAAGTTATAAA
CTGTACGAACTCTTATTTTCCAAGCGCAATGAGTGACGGGTGCCCTCCAC
GCAGCAACCCGAGACGAACCTCCCATGAACACAAAAAAGTAGACCAAGTC
GGAGAAGCCCGATCCGCTACGTCCCTCCCCCCACCACCCACGGCCACCAA
ACATATCATCCCTGCGTACGGCAACTCCCCTGCTTCAATACTTAAAGCGG
CTTGAGAGACGAGGAAGCATACTAGCCCAGCGGATGGCGGAAGTCAGGCG
GACGCAACAGTCATCGAGCCCGGAAGACCGACGGCCTGATCGAAGACGAC
AGCGGAAACCCGTCGGGGAGGAGGGTGTTGGCGGTCCTGGGAGGGGCGGG
GCGGGGCGGGGGCAGGAGGAGGGGGTTCGGCCGTTGTCCCGGCGTTCCTT
TCTGGCGGTCGCTGACACGGCCAGCACACCTTCCCCTCCCCCCCGAGAGG
ACTCTCCGCTGCTCGGCAACAAGAAACCGTCACGGACGGCATCGGTGATG
GCGTTGGATGGTGACGGGGGCAGTAGTGGCGAAAAGAAGGACACCATCGT
CGACTGGAGTTACATGGAAGGTGAGGAAGACAAAGCTGCATGGTTCCCCT
CTCCCGCAGGAAAAATACTCTTTGGGGCATTTCAGGCCGCTCGCTGCTGG
TGCACCTACAGTAACGGGGGTTTTGTTCGAAAGGGGGCGGAACCGCCCTC
AGCAACACAATCAGCAGGAACATCGTGAGCTCCCGCGTATTTAAGGGGTC
AGACTCTTCCAGTTTCTCGGGGCGCGGGGATACCTGCTCCGTATTGTCGC
GAGGTGTGACTCCACATTGGCACGTGTCGTGCCAAATTACGGCGAAGAAA
GAACCGTTCGGAGGCGTTTTCTTGAGGGTCGCAATTATCCCCACTCTCTC
AACAAACAATTGCGCACCCCCATATGCGCTGCGGTGCACCTTGTACGCCA
TAAGTAGGTATTTCTCCGGTTTCAGGAGGGAGCGAGTACGGAAGCGAAGC
TGGCAGCAAGAGAACGACGATTTCGGCCGCTCCCACAACACTCAGCGCGG
CAGATGAAGCATTGCTGGGTACATTCATGGACGTACTGGCGGAGGGTAGG
TTTTGCACGAATGTAACGAAAACGGATTGCAACCTACTGTTGTTGTTTGG
TATCATTTGTTGCATTGTCTTATCTTTTTGGGGTGCTTAGATTGTATTCG
TTCTCGAGGACGCTCCCACTAGGACGCTGAGCGCGGAGGAGTAAACGCTG
CTCGGGGCTTTCCGTGGAGACCCTGGCGGAGGGTGTAATCAGAGGATATA
TCGTTTTTATTTCGCCCGCTCTTGCTTCCGCCTACTTCCTCTTTGCAATA
ATACTCCTGATTCGTCTATGATCTCCGCTTCGTGTGATAACGTATGTAGG
ACCGTTGTTCCCCCCCCCCCACGCCCCGCCCCACGATGAAATCAAGGACT
ACCGATCAAAATCCACCGTTCCTCCAAGCGGCCTAGGAAGACAACGCTGT
GGCTGCAGGATTCCGACACGCTGGCGTGGACCACGAAGCGCGCCATCGGC
ACCAAACGTTGGCACAAACTGAAACTTAGCGCCATGATACGCGTGGAGGT
GTGACATGTATTTTCTCTGGCGTTGTTAGAAGCACCGAGGGTGACGTGAC
AATGCACCACTCACCCCCTCGGACATTACCCGCCGAGGCTGGCTGTGCCG
ACCATGGCTGCGTCTTCAGAAAACAATTTCCAACCGCTGATATTTTAGCT
CTGGCATCCCATGGGCTGCAAGGAGGGAATGGGGTGACATAAATTGCCGC
CCCCCCCCCCCCCTCAAGGGCGGGATGGAAACGTGGTCTCTTGGGCCCTC
ATCTCTCAGACCATCAACCCGCAGTGGGTCAATTGAGTGATGGATTTTTG
TTTATCCGGCGGTGACTTTCGATCATTTTCGCTGTTTGTACTTGTTTTCT
TATAACCTCGCGGCACTGTAATGCTTCGAAAGGCTGGAAAGGGCGGGGCC
AACTCCCTTATTATCGGGTCTGGCGAAGCTGCAGATGAAGACGTGTGCTT
CTCCTTGACGTTTCCTTACGTTTCAATGGGCTTCGAAGCAACGAGTCAGG
TGCGTCACACGCGCCCGCGCGCGTTCGCAGCTTTCAACCAACAAACACAC
ACGCAAGGCCAAATATATGATATAGACCCGAAAGCCTATCTATCGGCTCT
AGCGACAATTTGACAATTTGGTTGCAAGCTCGACGTCTCGTCAACCCCCG
ACTTCCTTGGAGATTAGGGTTTTCGTGTTGCATCATACTTTTCATGGCGG
CACGGCAGCGCGTTAGAAAAGCTTTCGGAATCTTGATTCGCCTCCGTCAG
TTTCGCGACAAGCAAGCCACAAGCAAGCCACATCGTCCATAGTTTTTTAC
CGGGCATTAAGCAAAAGGTAAATCGACGAAGACATTTTTGTAGAACCAGA
ACTACTTCTTTCCGTGACTGGTTTGTTCCAATTTTTTTGAGGAAGCTCTA
GGACGCTGACCGGGGCATTTCAAAAATGCCTCAACACTTCTTCAGCGGTT
CTCAAAGCGGTCAACGAGGCACGTAAACACCTCACGGCTCGAGGAAGAGA
GAAATTATTTGGTGTGCAAATATGTGGTCGATGCTTCAGTAGTAGAGGCA
AAAAACTCGGAGAGGTATACTGCTATGTGCTTCGTGCTTGTTGGCCGCCA
CCAGCCGCTGCAAACGACCCTGGTTCAAGACCCACTTCCGTGTATGATAA
AGTCAAAGTTCTATTGTTTTTCCCTACACACGCAGATGAAGAGTACACTG
CTTGAAAAAAACTGATTTGGACTTTTATTTAAAACTCACGCAGATTCTGT
GTAGTTCTTGTTTTTCCAACACCTGCGCGGGTGATCTTAACGAGCACTGC
CGTACAACCACCTGAGATTCGACTAGTTTTACCCACCGTAATTCCAATCC
GACAGCATGATCCACCCCGTCTGCCCTCATTTCGAGCGTGTCTTCATCTT
ACCTCAGGTAGCTCAGAGCGAATACCCCCCAAAAAATCCACCCCAAGCGG
TACTCAGCAAGCTATGTACTTCGTATCAATTTACATATATACTTCGTATA
CATTTTTTTTTACAGCTCGAGCGGGACGCTCTGGTACAAGGATTTGCGAT
GCTTGCAGAAGATCTACAGGCGGTGGCGGACGAGCGCAGGTACCTCGACA
CCGAGGCCAGGGTCGTTCCATCTGATCATCTGACCGTCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig171:305906..310946+

>mRNA_P-littoralis_Contig171.94.1 ID=mRNA_P-littoralis_Contig171.94.1|Name=mRNA_P-littoralis_Contig171.94.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1095bp|location=Sequence derived from alignment at P-littoralis_Contig171:305906..310946+ (Pylaiella littoralis U1_48)
CGTGGATCCAACTTGAACACGGCGAACCCCTGGCGGGCCCTGGGCGCATC
CAATTGGCGCTTTGTCGGGATAACGATGGAGGATGGCTTCGACTACATGT
ATCTTGTGACTTTCGTCGTGTTGGCATCAGCGATAGGGGGAGCCTTCGTC
ATCCGTCGCAGCTTACTCTCCGAAGCCCGACCAACCCAGCGGCTTGAGAG
ACGAGGAAGCATACTAGCCCAGCGGATGGCGGAAGTCAGGCGGACGCAAC
AGTCATCGAGCCCGGAAGACCGACGGCCTGATCGAAGACGACAGCGGAAA
CCCGTCGGGGAGGAGGGTGTTGGCGGTCCTGGGAGGGGCGGGGCGGGGCG
GGGGCAGGAGGAGGGGGTTCGGCCGTTGTCCCGGCGTTCCTTTCTGGCGG
TCGCTGACACGGCCAGCACACCTTCCCCTCCCCCCCGAGAGGACTCTCCG
CTGCTCGGCAACAAGAAACCGTCACGGACGGCATCGGTGATGGCGTTGGA
TGGTGACGGGGGCAGTAGTGGCGAAAAGAAGGACACCATCGTCGACTGGA
GTTACATGGAAGGTATTTCTCCGGTTTCAGGAGGGAGCGAGTACGGAAGC
GAAGCTGGCAGCAAGAGAACGACGATTTCGGCCGCTCCCACAACACTCAG
CGCGGCAGATGAAGCATTGCTGGGTACATTCATGGACGTACTGGCGGAGG
GACTACCGATCAAAATCCACCGTTCCTCCAAGCGGCCTAGGAAGACAACG
CTGTGGCTGCAGGATTCCGACACGCTGGCGTGGACCACGAAGCGCGCCAT
CGGCACCAAACGTTGGCACAAACTGAAACTTAGCGCCATGATACGCGTGG
AGGCTGGAAAGGGCGGGGCCAACTCCCTTATTATCGGGTCTGGCGAAGCT
GCAGATGAAGACGTGTGCTTCTCCTTGACGTTTCCTTACGTTTCAATGGG
CTTCGAAGCAACGAGTCAGCTCGAGCGGGACGCTCTGGTACAAGGATTTG
CGATGCTTGCAGAAGATCTACAGGCGGTGGCGGACGAGCGCAGGTACCTC
GACACCGAGGCCAGGGTCGTTCCATCTGATCATCTGACCGTCTGA
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