mRNA_P-littoralis_Contig171.126.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.126.1
Unique NamemRNA_P-littoralis_Contig171.126.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig171.126.1 vs. uniprot
Match: A0A6H5L4P0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4P0_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.260e-37
Identity = 95/184 (51.63%), Postives = 115/184 (62.50%), Query Frame = 2 
Query:   98 LAISEHRNNSPSVLLESQ--TRM--MEVEDLMNTKEWQTVTSAISTTTST-IPARAWRTPLSRHLKLASFLT---GCENGSG----GKRV------------FDETDLADEGIT--HPLHVAASQNILKLGSMILSGCAVAGVDPCVRDDTGRTPLHWAAMADRAPFMLLLLENGATVDAVDSQ 571
            +   +H  +S S+  + Q  TR   M+VED+M +++W   TSAISTTTS+ IPARAWRTPL+RHLKL SFL    GC   S       RV             D+  L +EG    HPLHVAASQNILKLG ++LS  A A VDP VRD +GRTPLHWAAM  R  F LLLLE+ A +DAVD +
Sbjct:    1 MTTGDHHQHSSSMCSQKQRNTRSNDMDVEDVMRSQDWVKATSAISTTTSSGIPARAWRTPLARHLKLVSFLEAGDGCNGNSNINNNSNRVSRDXXXXXXXXXXDDCLLDEEGTMRHHPLHVAASQNILKLGRVLLSPAAAASVDPNVRDGSGRTPLHWAAMTGRVDFALLLLESDAKLDAVDRE 184
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BLAST of mRNA_P-littoralis_Contig171.126.1 vs. uniprot
Match: D7G1Y0_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y0_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.610e-22
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:  368 HPLHVAASQNILKLGSMILSGCAVAGVDPCVRDDTGRTPLHWAAMADRAPFMLLLLENGATVDAVDSQ 571
            HPLHVAASQNILKLG+++LS  A A VDPCVRD +GRTPLHWAAM  RA F LLLLE+GA +DAVD +
Sbjct:    4 HPLHVAASQNILKLGTVLLSPAAAASVDPCVRDGSGRTPLHWAAMTGRADFALLLLESGAKLDAVDRE 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4P0_9PHAE1.260e-3751.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1Y0_ECTSI1.610e-2273.53Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:437880..442976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1Y0
PFAMsAnk_2,Ank_4
Model size1267
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.48e-24
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-07_003720.1
Descriptionspectrin binding
Cds size894
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789827.385364-UTR-P-littoralis_Contig171:437879..4380361680789827.385364-UTR-P-littoralis_Contig171:437879..438036Pylaiella littoralis U1_48UTRP-littoralis_Contig171 437880..438036 +
1680789827.4287922-UTR-P-littoralis_Contig171:442760..4429761680789827.4287922-UTR-P-littoralis_Contig171:442760..442976Pylaiella littoralis U1_48UTRP-littoralis_Contig171 442761..442976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789827.40297-CDS-P-littoralis_Contig171:438036..4380691680789827.40297-CDS-P-littoralis_Contig171:438036..438069Pylaiella littoralis U1_48CDSP-littoralis_Contig171 438037..438069 +
1680789827.4176407-CDS-P-littoralis_Contig171:441899..4427601680789827.4176407-CDS-P-littoralis_Contig171:441899..442760Pylaiella littoralis U1_48CDSP-littoralis_Contig171 441900..442760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.126.1prot_P-littoralis_Contig171.126.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 438037..442760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.126.1

>prot_P-littoralis_Contig171.126.1 ID=prot_P-littoralis_Contig171.126.1|Name=mRNA_P-littoralis_Contig171.126.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=298bp
MMEVEDLMNTKEWQTVTSAISTTTSTIPARAWRTPLSRHLKLASFLTGCE
NGSGGKRVFDETDLADEGITHPLHVAASQNILKLGSMILSGCAVAGVDPC
VRDDTGRTPLHWAAMADRAPFMLLLLENGATVDAVDSQNRTPLLSSSAFG
ATSAVRLLLQRGADVSKASRGGLTPLHAAAAGGHVEVVERLIAAGADVDK
RTDVGAKPRHCAEKEGHTDVVRALLLSSCESRLPSLAASGAEAGAGAGGG
EGGGGENEFWGRGGGGGRIHSHAQERRVTFVQHRFDRQSLLRRRLSR*
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mRNA from alignment at P-littoralis_Contig171:437880..442976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.126.1 ID=mRNA_P-littoralis_Contig171.126.1|Name=mRNA_P-littoralis_Contig171.126.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5097bp|location=Sequence derived from alignment at P-littoralis_Contig171:437880..442976+ (Pylaiella littoralis U1_48)
AAATCGCAACACGACCTGACAAACAGGCAAAAGCCGGCACCCTTCCCATC
ATATTCAATACTTCAAAGTACATACACACACACACACACACGTGCTTCTG
GCTATCTCCGAGCACCGAAATAACAGCCCGTCCGTGTTACTGGAATCGCA
GACAAGGATGATGGAGGTGGAGGATCTCATGAATACCAAGGTGAGGTCGA
TCGCGACGGGGCCGTTCTTCGGCGGTGAAAGAGCTCTTCTTGACAGATTT
TTCGAGTACATTTATCATATGATATCTACATGACCTTTTTGGATGTAATG
TTCAGGCGGCAACAACACCTGCTGTCCCGCTGTGAGATCGGCCATCTGCC
TGCCCTCTTATTCTAGTTGAAAGTGGCAGACAGCAGGGAGTCGAGAGACT
ACAGGCTGTTCCTCTATCAAAGCGGTCGATGTACTCACTCTTGAGTTCGA
TAATTTATCGTACGGTCAAAGTAGAGAGGGAGGTTTCACAGCAGCAGACA
GATCACGCACGTGTGGTTTTCGTTGTCTAGAATCCCGCCCCCGACCCCCG
CTCTGGCCTGGTAGCAGCAGTACTTCCTGTTTCGTTTCAGGAATCAATCC
TCTTTATTTCCTGTCCAGGTCGTCCTTCTCTTTTCGCTCTTAGGCCCATC
GACGGGGTCACACAGGAGGAAGGTCAACACAGGAGGAGTTACCCCCACCT
TCCTTCTGCGGTACATGCGTGAGATTTTTTCTCGCGAGCAGGGGTCCGCG
GTCCCTACCCTCGTCGGCGAAGCCGAACCTGCTTTTACTAACAGCATGGC
CGCTTTCAAAGTAGCAAAGGAACACATTCACCGGGAATCGAACCCCCATT
CCTCTGCATCTAGTGGTGAACGAGGGGACCACTAGTCCACCGGGGCGACC
GCTGTGTATAACAGAGTAATACATAGACCTACACATCACGCTGTGCTTGT
GTGTCTGCAACTCATCAGATAACACACCGTTGCAGCTCCCCTGAGGGTAT
CAGGCGCAACAAGACACTTTTGGAGTCGTCTTATGTGACACACTGCTGTA
CGTCACGTGGTGACCATGTACGGGTCTGCATATACAAAACAATGCCGTCA
GTTCGTCTAAAATGATTGTAAGTTTATTACGAACGATGATATGTGGCCGG
TTATTGAGATCCATTTACTCCTTTTTGGAAGAAAGAGGAAAGAAGGAGAA
AAAAGCAAAAAAAGCCCCGAGGCGAAAAGTCCCCGGGGCGTTGTCTCTCT
TTCCCTGTTTGCGGCACCCGCGTAGTGAATGTACACACGAACGCGTGTGT
GTACCTGTTATGGGTGCTCGTGGTTAGTGTTATCGTCATTGTGGTGATGG
TGGCGATGGTGGTGATTGTGTGATGGTGGCGATGGCGGAAAGCCAGCCCG
TGGCCACAAATGTGTTGAGGCCGAGGAAGATCGGAAATAAACGGATGAAA
AAAGGCCTTACCTATGATATAACAGCAGCATGGTACACAATAAATCGAAG
TAATACTACCCGCAGGTACTCGTTCGACTACAGCATCGTTTTCAGTCTCC
CCCCGTCTCTACCAATAAGTCGGTGGCTGCAGACGACAGCAGTTGCTGTT
TGGAGTGCTGCCTGCGACGTACAACAGGCCCAGTAGTCGAGTAAAAAGAA
AAGAGAAAACATCGTGATTATGTCTCGAGCGCTGTCAAAATGACGACCCC
GTTGGCGGTCCAGTGAAGGAGCAACGACCAACGAAAGCTATCACCCTAAT
CGAAAATCGCCAAATCTTTCTCGAGGCGTCTATGGTGGGCACAGAAGAAT
TATTGGAAAGGAGTCAGGTCAATCTATCAATACAGGGCGCGCCGCAGGCA
CCAAGACCGCGGAGTGGACGCAAGCATTTATGCCGCGTTTCTCTTCTCTC
CACATAAGAACAGGTGACGTTGTCCGAGAGTCAACAGCCCCTTGAACATA
AAATAAAATAAAAGCTGGAGTCGTGATGTATGTCGTCGAGGACGATATCG
ATGCTGTCCTTGTGCTGCTGATGTTGCCTATGGTCACATCGAGCTCTTCT
ATTCTTGGTCCACTTCGCTGTTGACGTTGCTCTTGGCTACCCATACTTCC
GTCACTCTCGTGCCGCTTCGGCGCTGACGTTGCCCCAGGCCACCCTAGCA
CCGTCACTCTCCTACGTCTACTCTCGTTGTTGTTTCGTTCCAGTCGGTCC
CCTTAAGCTCCTTTCTACACACGAGGTACAAGGCTTGTTGAACAAAAATG
CACGCTTAGAGTGAGTTCGACCATCCTCTTCCCCGTTCGTCGCCGCTCGT
CTCCGTCCGGCTTGGCAGCAAACGTGGCTTCTTGACGGTATGGTCCCTCT
CTGCACCCAAGACCGTGTCGTCTTTTTGCCTATGGTGTCACCACAGTACC
GCTGTGCCCAAAAAGCGCTCGCGAATCGCACATTTGCACCTAGCGCGTGA
AAAAACGACCCAACTCTACCGGCACGTCCTTAAGCATTTGACCACAGCGT
CGCCGTAATAAGGTATGATACCCTTGAGGGTGACTCCGACCTTACACCCG
CCAGAAAGACCCTTAACTCGCTATGGGTCATGCCTGACAGCAGACCTTGC
CGAGGCAGCGAGCGGAACGAAGCATGTTTTTGTGCGTTGTATGTCGGGTC
CCATCTATGCTGGATGCCAGCCTATACCCTCCGGTACGACCAATGATGTG
GGGGCGCTGGGGGTCTACGAGGATGCATACGTTTTTTTTATGACAACAAA
AATTTGCCAACGAATTTTCAAGAGACACCCCCCGCACACCACATGACCTA
CATGTGGGTGTCCTTCCTTCCTCGTCATCGGGGCGCCCCGCCCCGAAACC
GTCGATTCTGATTCTGCACGCCCCTATGTATCTGGGCTTACCCGCAGCCG
ATTGTTGTTGTCTTGCGCTCCTCGTGTCTCCGGGATGATCGATCCACACG
TTCTCAAGATCTGACGCACGTGGGGAAATTTAGCCGACAGGCACGAGATT
CATTTCGATATTCCGTGAGACGTCGACGACTCCGAAAAAAAAAAATGACG
TCTGCTTCTTCTTGCTCACACGGAATCAATCACCCTCGAGTTGTTGAAAG
AGGCCCACGACAAGAACAAACCCAGGGATACATACGAATATACACGAACT
ATACGTACATGACGCGTGCAGCGTGGACAGTTTGTTGGCTCTCCGGTTAC
GAGGAAGAACGGAAGGGCGCTGTGACGGTGTGTGTGGTGTGCGACTATAA
TTAGCCTGCTCGCGTCGTTTTCGACCATATGTTGCCTTGGTGATCCATCT
GATCCGGGGAAAAAATGTTTCGTGGCCATATCGTTTGTGTGATCCAGCTT
TTCGCCGCGGGAAATGTTTTCTTCGTGCGTTTGTTTCGGGTACCACCATC
ATTTGTTCCCAAACGGCCCAGAAAGCTGTTTTTTTTAGTAAAACTAGGCA
ACGGCATCAAGCAAATCTCGGCCCCTGGGACACCAATCGTGACCAAATGT
CTCGGGGCGTGCGCACCAGTGTTTCGTGATTTGGCCGCAGGCAGCGAGTG
TGATGTGCGGTGAATTTTTCTGCGGCGAAGTCGTGCCCACGGTGTAGGTC
GAGGTCACGAAGTCGGCTGAAAAAGCAAATGCAGTGATTTATAAGGGCGA
GGTCCCGCCGCATTCCACTTTTTGTTCGACTACGTTTTTTGAACCGTAAC
CCACACCACAGACGCCACAATCTCGCCATAAGCAAAGCCCACACCAACTT
CTCTTCCTTTGGCCAACCTTTTGACACTGGAGTGTACGTTCCCGAGATTT
GGTTGCGATTATTGTTCCAGTGGCCGAGGTCTGGTTGATTCTGTTGCCTG
TTGTGTTCACCGAGGCCATTTCTGGGGGGGCGGGGTTCTGAGTTTGGTTT
CGGGGGGGAACTGCAAATCCAAAACTCTACATCATACGTCCGCCATAAGA
GAACGGCCATACCTCGTTCAAACCATGAAATCGATCTGTTTCATGTGTTT
TTTTTTTATCCTCATGTCAGGAGTGGCAAACGGTAACATCGGCCATCTCG
ACGACGACATCCACCATCCCTGCCAGGGCATGGCGCACCCCCCTGTCGCG
GCACCTCAAGCTAGCTTCTTTCCTCACGGGATGCGAGAACGGCAGCGGAG
GAAAACGCGTATTTGATGAAACGGACTTGGCGGACGAAGGCATTACCCAT
CCTCTGCACGTTGCCGCTTCCCAAAACATCCTCAAGCTCGGGAGCATGAT
TTTGTCCGGGTGTGCCGTAGCTGGCGTGGACCCTTGCGTACGAGATGACA
CCGGCAGAACACCGCTGCACTGGGCAGCCATGGCCGACCGCGCTCCCTTC
ATGCTTTTGCTGCTGGAGAACGGCGCAACTGTGGACGCTGTCGACTCCCA
GAACCGCACCCCTCTACTCTCGAGCTCCGCTTTCGGGGCGACAAGTGCTG
TGCGCCTGTTGCTGCAACGGGGGGCAGATGTTTCCAAAGCTTCTCGGGGA
GGTTTGACACCCCTCCACGCCGCTGCCGCCGGGGGCCACGTGGAGGTAGT
GGAGAGGCTGATCGCGGCAGGGGCCGATGTCGACAAACGAACGGACGTGG
GTGCTAAACCTCGCCACTGCGCCGAGAAGGAGGGGCACACGGACGTCGTA
CGGGCGTTGTTGCTGTCTTCATGTGAATCGAGACTGCCATCCCTCGCCGC
ATCAGGGGCAGAAGCTGGAGCGGGAGCCGGAGGGGGCGAGGGAGGAGGAG
GAGAGAATGAGTTCTGGGGTAGAGGTGGCGGTGGTGGTCGGATACACTCA
CACGCGCAGGAGCGGCGGGTAACCTTTGTGCAGCACAGGTTCGACAGGCA
AAGCCTTTTGCGACGGCGTCTGTCACGATGAAGTAAATCATGAGATGAAA
ATGTTCAGCTTGCTTCCCCCAAGCATCGCCCCATTTTTTATCCCACAGTA
GAACAGCAATGTATTCTGACAAGCGTTGGGCACCGGCGTTTGCTTATCGA
TAGAGTAGGGCAGATAGTAGCAAGCAACTTGTTTTGTGTGTGGCGCAAGG
GATGTTGTAGAGGAGAAATATCTTCACAATGTGACATAGGGTTGGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig171:437880..442976+

>mRNA_P-littoralis_Contig171.126.1 ID=mRNA_P-littoralis_Contig171.126.1|Name=mRNA_P-littoralis_Contig171.126.1|organism=Pylaiella littoralis U1_48|type=CDS|length=894bp|location=Sequence derived from alignment at P-littoralis_Contig171:437880..442976+ (Pylaiella littoralis U1_48)
ATGATGGAGGTGGAGGATCTCATGAATACCAAGGAGTGGCAAACGGTAAC
ATCGGCCATCTCGACGACGACATCCACCATCCCTGCCAGGGCATGGCGCA
CCCCCCTGTCGCGGCACCTCAAGCTAGCTTCTTTCCTCACGGGATGCGAG
AACGGCAGCGGAGGAAAACGCGTATTTGATGAAACGGACTTGGCGGACGA
AGGCATTACCCATCCTCTGCACGTTGCCGCTTCCCAAAACATCCTCAAGC
TCGGGAGCATGATTTTGTCCGGGTGTGCCGTAGCTGGCGTGGACCCTTGC
GTACGAGATGACACCGGCAGAACACCGCTGCACTGGGCAGCCATGGCCGA
CCGCGCTCCCTTCATGCTTTTGCTGCTGGAGAACGGCGCAACTGTGGACG
CTGTCGACTCCCAGAACCGCACCCCTCTACTCTCGAGCTCCGCTTTCGGG
GCGACAAGTGCTGTGCGCCTGTTGCTGCAACGGGGGGCAGATGTTTCCAA
AGCTTCTCGGGGAGGTTTGACACCCCTCCACGCCGCTGCCGCCGGGGGCC
ACGTGGAGGTAGTGGAGAGGCTGATCGCGGCAGGGGCCGATGTCGACAAA
CGAACGGACGTGGGTGCTAAACCTCGCCACTGCGCCGAGAAGGAGGGGCA
CACGGACGTCGTACGGGCGTTGTTGCTGTCTTCATGTGAATCGAGACTGC
CATCCCTCGCCGCATCAGGGGCAGAAGCTGGAGCGGGAGCCGGAGGGGGC
GAGGGAGGAGGAGGAGAGAATGAGTTCTGGGGTAGAGGTGGCGGTGGTGG
TCGGATACACTCACACGCGCAGGAGCGGCGGGTAACCTTTGTGCAGCACA
GGTTCGACAGGCAAAGCCTTTTGCGACGGCGTCTGTCACGATGA
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