mRNA_P-littoralis_Contig171.11.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.11.2
Unique NamemRNA_P-littoralis_Contig171.11.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig171.11.2 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 334 bits (856), Expect = 1.100e-105
Identity = 171/203 (84.24%), Postives = 182/203 (89.66%), Query Frame = 1
Query:  886 PSSAGAIERDPILKDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPAAVDPPPFEEHPEIIDNIYKFVLQKFHNVRMGDFSRRLSENSTLRLSKGELALRQQLRATSAKG------AAPVGGGTDGTDQLASGVVAGSGTVTSEGLDVEMARKMTKSQL 1476
            PSSAGAIERDPIL+DMVGEVDARNDPVNGAGLLFPTLAWYEFVFH ENGIYHFLR+PYFLG YLGDL AEILRVVTESSEVR+AWAKCCP+AV PPPFE  PEI+D+IYKFVLQKFHNVRMGDF+RRLS+NSTLRLSKGELALRQ LRATSAKG       APVGGG DGT +LA GV+AGSGTVT+EGL VE  RKMTK QL
Sbjct:  178 PSSAGAIERDPILQDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHVENGIYHFLRDPYFLGTYLGDLSAEILRVVTESSEVRRAWAKCCPSAVAPPPFEAQPEILDDIYKFVLQKFHNVRMGDFARRLSQNSTLRLSKGELALRQNLRATSAKGEATAKGVAPVGGGIDGTSRLAGGVMAGSGTVTNEGLAVETVRKMTKPQL 380          
BLAST of mRNA_P-littoralis_Contig171.11.2 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 3.760e-87
Identity = 149/217 (68.66%), Postives = 164/217 (75.58%), Query Frame = 2
Query:  275 LNEYSEQDAAVEVRDDAVENVRAGPRDVALVKKSVTALLDQFPWLQSLWGMVMDLPPTKDMIMISWNYLVDLLAAGRARKPTTRTASTFTLARFETWPDRLRSWINHGSVQEVARTRQGNQGTHYLCCIINLVDE------------ELYRVFVEEREKSNTVALTYPATIHKISPARGRILYYVAGWLLSRVWSHSRRHNIPDQEWDFIVQHNHSP 889
            LN +S Q+AAVEVRDDAVEN+RAGPRDVA VKK VTA LD FPWLQS+WGM +D+PPT++MIM SW YLVDLLAAGRARKPTTRTASTFTL+RFE WPDR+R+WINH SVQEVARTRQG+QGTHYL CIIN+VDE            ELYRVF+EEREKSNTVALTY   IHKIS ARG+                         EWDFIVQHNHSP
Sbjct:    2 LNAHSGQEAAVEVRDDAVENLRAGPRDVAQVKKGVTAALDHFPWLQSIWGMGIDIPPTREMIMTSWKYLVDLLAAGRARKPTTRTASTFTLSRFEAWPDRIRTWINHESVQEVARTRQGDQGTHYLRCIINVVDECYGEGVKPISGQELYRVFMEEREKSNTVALTYLTEIHKISTARGK-------------------------EWDFIVQHNHSP 193          
BLAST of mRNA_P-littoralis_Contig171.11.2 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.150e-30
Identity = 69/148 (46.62%), Postives = 97/148 (65.54%), Query Frame = 1
Query:  889 SSAGAIERDPILKDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPAAVDPPPFEEHPEIIDNIYKFVLQKFHNVRMGDFSRRLSENSTLRLSKGELALRQQLRA 1332
            SS  AI  + +L+D V  VD +ND  NG GLL+PT+ W EFV+  E GI+HFL+NP FL A LG LPAEI +VV+E+  V++ W  CCP    PP  +  P +   ++ F + K  +VRMGD+++ ++EN+ L+ +K  L LRQQL A
Sbjct:  221 SSREAIFTNVMLRDFVAGVDQKNDLKNGPGLLYPTMDWVEFVYAVERGIFHFLKNPIFLAACLGGLPAEIFKVVSEAEVVKEMWGNCCPPG--PPAID--PSVSQEMFLFEVGKILDVRMGDYAKSVTENTFLKFTKAALGLRQQLNA 364          
BLAST of mRNA_P-littoralis_Contig171.11.2 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.760e-29
Identity = 60/122 (49.18%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  889 SSAGAIERDPILKDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPAAVDPPPFEEHPEIIDNIYKFVLQKFHNVRMGD 1254
            S+  A+E+D  L+ +VGEV  R+D +NGAGLLF T  ++EF +  E G +H L  P+ LGAYLGDLP E LRVV E++ VR AWA+CCP +     FE   ++   ++ F++QK+HN RMGD
Sbjct:  240 SAGAAVEKDKELEHLVGEVKRRHDEINGAGLLFATKVFFEFTYALEIGYFHILSKPFLLGAYLGDLPGETLRVVREATAVRDAWAECCPPSSGSVNFEWDSKVAHEVFLFIVQKWHNCRMGD 361          
BLAST of mRNA_P-littoralis_Contig171.11.2 vs. uniprot
Match: A0A6H5JA88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA88_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 8.620e-29
Identity = 63/97 (64.95%), Postives = 71/97 (73.20%), Query Frame = 1
Query:  889 SSAGAIERDPILKDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPAAVDPPPF 1179
            SSA AIE D  L ++V  VD R D  NGAGLLF +L +Y FV   ENG YH L  PY+LG YLGDLPA  LRVV+ES EV+ AWAKCCPAAV+PPPF
Sbjct:  150 SSAAAIETDAHLSNLVAGVDKRIDLKNGAGLLFVSLDFYNFVLMLENGYYHVLHQPYYLGPYLGDLPAGPLRVVSESEEVKDAWAKCCPAAVEPPPF 246          
BLAST of mRNA_P-littoralis_Contig171.11.2 vs. uniprot
Match: A0A6H5JX42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX42_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 3.080e-27
Identity = 63/148 (42.57%), Postives = 93/148 (62.84%), Query Frame = 1
Query:  889 SSAGAIERDPILKDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPAAVDPPPFEEHPEIIDNIYKFVLQKFHNVRMGDFSRRLSENSTLRLSKGELALRQQLRA 1332
            SS  A+  + +L+D V  VD +ND  NG G L+PT+ W EFV+  E GI+HFL+   FL A LG LPA+I +VV E+  V+  W  CCP    PP  +  P +   ++ F + K  +VR+GD+++ ++EN++L+ +K  L LRQQL A
Sbjct:   82 SSREAMFTNVMLRDFVAGVDHKNDLKNGPGRLYPTMDWVEFVYAVERGIFHFLKKLIFLAAGLGGLPAQIFKVVREAEVVKDMWGNCCPPG--PPAID--PSVSQEMFLFEVGKILDVRVGDYAKSVTENTSLKFTKAALGLRQQLNA 225          
BLAST of mRNA_P-littoralis_Contig171.11.2 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 7.360e-27
Identity = 73/188 (38.83%), Postives = 105/188 (55.85%), Query Frame = 2
Query:  362 LVKKSVTALLDQFPWLQSLWGMVMDLP---PTKDMIMISWNYLVDLLAAGRARKPTTRTASTFTLARFETWPDRLRSWINHGSVQEVARTRQG-NQGTHYLCCIINLVDEELYR----VFVEEREKSNTVALTYPATIHKISPARGRILYYVAGWLLSRVWSHSRRHNIPDQEWDFIVQHNHSPPVRA 901
            +VK   T L + +P L  LW  + D+    PT  +I+  W  LVDLLA+    K +T+ A+ FT+ARF+ W   LR W++   +Q V    Q   +G H LC +IN VDE   R    +   +   +N +  TYP T   +S  R R+LYY+AGW+LS++ +H RRHNI + EW +IV  +  P  RA
Sbjct:   12 VVKAVDTVLGEWYPHLLPLWATLTDVNNFGPTIKVILDEWKALVDLLASTCKGKRSTKEATKFTVARFQRWEGTLRGWMSDDVIQRVMFGLQSVERGKHELCGVINQVDEVNLRRLGGLAENKLRDANVITPTYPRTQVALSIPRRRLLYYIAGWVLSKIVTHVRRHNIQEIEWMWIVDRHKYPSKRA 199          
BLAST of mRNA_P-littoralis_Contig171.11.2 vs. uniprot
Match: A0A6H5KKY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY9_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.300e-24
Identity = 69/162 (42.59%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  931 MVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPAAVDPPPFEEHPEIIDNIYKFVLQKFHNVRMGDFSRRLSENSTLRLSKGELALRQQLRATSAKGAAPVGGGTDGTDQLASGVVAGSG 1416
            +  +VD++ND  NG+GLL+PT+ W EF +  E GI+HFL+ P FL A LGDLPAEI++VV+E+  V++ W  CCP    PP  +  P +    + FV+ K  NV      + + EN++L  SK   ALRQQL A       P GG   G+ + A GV  G G
Sbjct:   65 LAAKVDSKNDMKNGSGLLYPTVEWVEFKYAVERGIFHFLKKPIFLAACLGDLPAEIVKVVSEAEVVKEMWGNCCPPG--PPAID--PSVSQEKFIFVVGKILNV-----GKSVRENTSLMFSKAAPALRQQLNAR----VGPNGGAGAGSGE-AKGVPQGDG 212          
BLAST of mRNA_P-littoralis_Contig171.11.2 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.690e-22
Identity = 50/108 (46.30%), Postives = 73/108 (67.59%), Query Frame = 1
Query:  889 SSAGAIERDPILKDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPAAVDPPPFEEHPEIIDNIY 1212
            S   A+E+D  L+ +VGEV  RND +NGAGLLF T A++EF + +E G +H L  P+ LGAYL  LP ++LRVV+E++E+R AWA+CCP +     FE   ++   ++
Sbjct:  182 SEGAAVEKDKELEHLVGEVKRRNDEINGAGLLFATKAFFEFTYASEIGYFHILSKPFLLGAYLVGLPGDMLRVVSEATEIRDAWAECCPPSSGSVNFEWDSKVAHEVF 289          
BLAST of mRNA_P-littoralis_Contig171.11.2 vs. uniprot
Match: A0A6H5K3B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B5_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.840e-20
Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = 1
Query: 1012 VFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPAAVDPPPFEEHPEIIDNIYKFVLQKFHNVRMGDFSRRLSENSTLRLSKGELALRQQLRA 1332
            V+  E GI+HFL NP FL A LG+LPAEI +VV+ES  V++ W  CCP    PP  +  P +   ++ F + K  +VRMGD+++ + EN++L+ +K  L LRQQL A
Sbjct:   44 VYVVERGIFHFLENPIFLAACLGELPAEIFKVVSESEVVKEMWGNCCPPG--PPAID--PSVSQEMFLFEVGKILDVRMGDYAKSVPENTSLKFTKAALGLRQQLNA 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.11.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KW14_9PHAE1.100e-10584.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K2_9PHAE3.760e-8768.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K201_9PHAE3.150e-3046.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM7_ECTSI1.760e-2949.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA88_9PHAE8.620e-2964.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX42_9PHAE3.080e-2742.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7M3_9PHAE7.360e-2738.83Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KKY9_9PHAE1.300e-2442.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R0_ECTSI1.690e-2246.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3B5_9PHAE5.840e-2045.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:72623..75271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1663
Hectar predicted targeting categoryother localisation
Exons5
Cds size906
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.11.2prot_P-littoralis_Contig171.11.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 72642..74533 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789827.8873386-UTR-P-littoralis_Contig171:72622..726411680789827.8873386-UTR-P-littoralis_Contig171:72622..72641Pylaiella littoralis U1_48UTRP-littoralis_Contig171 72623..72641 +
1680789827.984687-UTR-P-littoralis_Contig171:74533..752711680789827.984687-UTR-P-littoralis_Contig171:74533..75271Pylaiella littoralis U1_48UTRP-littoralis_Contig171 74534..75271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789827.9160953-CDS-P-littoralis_Contig171:72641..727281680789827.9160953-CDS-P-littoralis_Contig171:72641..72728Pylaiella littoralis U1_48CDSP-littoralis_Contig171 72642..72728 +
1680789827.9382753-CDS-P-littoralis_Contig171:72923..729931680789827.9382753-CDS-P-littoralis_Contig171:72923..72993Pylaiella littoralis U1_48CDSP-littoralis_Contig171 72924..72993 +
1680789827.9549809-CDS-P-littoralis_Contig171:73259..733781680789827.9549809-CDS-P-littoralis_Contig171:73259..73378Pylaiella littoralis U1_48CDSP-littoralis_Contig171 73260..73378 +
1680789827.963621-CDS-P-littoralis_Contig171:73626..740101680789827.963621-CDS-P-littoralis_Contig171:73626..74010Pylaiella littoralis U1_48CDSP-littoralis_Contig171 73627..74010 +
1680789827.9755282-CDS-P-littoralis_Contig171:74287..745331680789827.9755282-CDS-P-littoralis_Contig171:74287..74533Pylaiella littoralis U1_48CDSP-littoralis_Contig171 74288..74533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.11.2

>prot_P-littoralis_Contig171.11.2 ID=prot_P-littoralis_Contig171.11.2|Name=mRNA_P-littoralis_Contig171.11.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=302bp
MDPNTLRDVVSGSKEGSGPSPVKPRDVFMGVDSPAEDSDDRAHGGDSPTP
IQGHPDELDDDNLEGEDSQDEEEQDLNILAPVAATLNEYSEQDAAVEVRD
DAVENVRAGPRDVALVKKSVTALLDQFPWLQSLWGMVMDLPPTKDMIMIS
WNYLVDLLAAGRARKPTTRTASTFTLARFETWPDRLRSWINHGSVQEVAR
TRQGNQGTHYLCCIINLVDEELYRVFVEEREKSNTVALTYPATIHKISPA
RGRILYYVAGWLLSRVWSHSRRHNIPDQEWDFIVQHNHSPPVRAPLREIQ
S*
back to top

mRNA from alignment at P-littoralis_Contig171:72623..75271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.11.2 ID=mRNA_P-littoralis_Contig171.11.2|Name=mRNA_P-littoralis_Contig171.11.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2649bp|location=Sequence derived from alignment at P-littoralis_Contig171:72623..75271+ (Pylaiella littoralis U1_48)
GGGTTGAACAGGGTGTGGCATGGACCCGAATACTCTGCGCGATGTGGTCT CCGGATCGAAGGAGGGGTCCGGACCATCGCCAGTCAAGCCGAGAGACGTG TTCATGGTGAGCTTATGTATACCCTCCTATCGCTGCCTTCCTCATCTCTG GTGTCAAGAGGTTGACAGGAAAAACCAATTTTTATTTTTAATCCAAGCGC TTTCTCCTTCTGGGTGAGAGAAAAGTACTCCTGCATTCAGACCATGTAAT CTACTAAGTCCCCTTCTTTGTTGTTGTTTTCTCTCTCCATTCCTCCCGTA GGGAGTGGATTCACCCGCAGAGGATAGCGACGACCGCGCGCATGGAGGTG ATTCTCCAACGCCAATCCAAGGTACCTTTGGCTATTTTGCAAAACACACT ACGGGTTCTGACCCTTGAACGTGTGCAGTGGTTGCCGTTGTTTGTCACAT GCTAAAACAAAAATATGACTCCCTGTCCCTGCTCGGTACCTTGTTCCATC GCGGACGTCGTCCATGGCCACAAATTTGTTCAAAGATTCGTGATGATATT GAAGAGCCCATAATCCGGAGTAGGATTCACCATTACAGAAAATCAGGCCT TGGAGCTCATGCGTTTAACTGTTCTATCTGATTCAAGGTCACCCGGATGA ATTGGACGATGACAACCTGGAGGGAGAAGACTCACAAGATGAGGAGGAAC AGGATTTGAATATTCTAGCCCCCGTCGCTGCAACGCTGAATGAGTACTCA GAGCAGGTGAGGTCAGTTGGGTACCCAGGTGTTTTTAGGTAGGCGGAATG ATGTGCAGCATCGTAGGCATGGTGCCTAGGCGGGCGGGTTCGAAAACTTC GTCTTCTATCAACCAAAAAATGATCCAGACGTACAAGGGCCCATAGATTA TGGACAGCGATGGCGACAACGTGCCGCTACGATTTGCGAAGAATCGCACT TACTCGTACTCACTCGTTCTTGTTTTCCTCAAACCCTGTATGTCCGATTC TCAGGATGCCGCGGTCGAAGTGCGGGACGACGCCGTGGAAAACGTACGGG CGGGTCCTCGTGATGTAGCGTTAGTGAAAAAAAGCGTAACCGCTTTGCTC GACCAGTTCCCTTGGCTGCAAAGTCTTTGGGGTATGGTCATGGACCTCCC TCCTACCAAAGATATGATTATGATCTCCTGGAACTACCTGGTAGACCTTC TCGCCGCTGGCAGAGCACGCAAACCTACGACAAGGACGGCTTCCACGTTC ACCTTGGCGCGCTTCGAGACATGGCCCGACCGGTTAAGGTCGTGGATCAA CCACGGCAGTGTTCAGGAAGTAGCGCGCACACGCCAGGGCAACCAGGGCA CACACTACCTGTGCTGCATCATCAACCTAGTGGATGAGGTACGCACGCTA GGCGGCACTCACCGAGTACAACTTACATGATTGTTGGTGTTTCGTCTGCT TTGTTACGGATCAGGAAAAAAAAATTGTGTCCATAGTAATTTGTTCATAT TGAATGACGGGGCGGGTTATTATACGAGTGCGTCAACTGTCTTACAAGCT CGTAGACCTCCTTAGTTCGCTCTAGTTCGCCTTAGGTTCTTCGATTTATA TAGACTTTTGTTAGTTCCTCGTTCAATTGATATTCTTCAACTCGTATCCC CTCTGTGCACAACAGGAGCTATACCGCGTGTTCGTGGAAGAGAGGGAGAA ATCGAACACGGTGGCTCTTACCTATCCTGCGACAATCCACAAGATCTCGC CGGCGCGTGGGAGGATCCTGTATTACGTTGCGGGGTGGTTGCTTAGCAGG GTGTGGTCGCATAGCAGAAGACACAACATACCCGACCAGGAGTGGGACTT CATTGTGCAGCACAATCATTCCCCTCCAGTGCGGGCGCCATTGAGAGAGA TCCAATCCTAAAAGATATGGTTGGGGAGGTCGACGCGAGGAATGACCCCG TTAACGGTGCGGGTCTCCTCTTTCCTACTCTGGCGTGGTATGAGTTCGTA TTCCACGCCGAGAACGGAATATACCATTTTCTGCGTAACCCGTACTTTCT CGGTGCTTATCTAGGGGACTTACCGGCTGAGATCTTGAGGGTAGTGACAG AGTCGTCAGAGGTACGGAAGGCATGGGCTAAATGCTGCCCTGCCGCCGTT GACCCCCCCCCGTTCGAAGAGCATCCAGAGATTATCGACAACATTTACAA ATTTGTCTTGCAGAAGTTTCACAACGTCCGTATGGGGGATTTCTCGCGCC GATTGAGTGAGAACTCCACGCTCAGGCTGTCGAAGGGCGAGTTAGCCCTG AGACAACAGCTAAGAGCCACCAGTGCGAAGGGGGCGGCTCCAGTTGGTGG GGGGACTGATGGAACGGACCAGTTGGCGAGTGGTGTCGTGGCAGGCTCGG GTACTGTGACGAGTGAGGGCCTTGATGTTGAGATGGCGAGAAAGATGACC AAGTCACAGTTGTTCGCACTGACCAAGGGCACACTAGTGGACCTTATAAA AGCTGGGGGTGGCGACGCCAAGGTGTGGAGAAAGAAGGATTaTTTGGTCG ATGCTTTGCTTAGCTTTGTCGGCGGCTCTAGCGAAGACGGCGAAGGAGGG CGGGTAGATAGTGGGTCGGGAAACGGGCGAGTCGATGTGGTGGGGAGCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig171:72623..75271+

>mRNA_P-littoralis_Contig171.11.2 ID=mRNA_P-littoralis_Contig171.11.2|Name=mRNA_P-littoralis_Contig171.11.2|organism=Pylaiella littoralis U1_48|type=CDS|length=906bp|location=Sequence derived from alignment at P-littoralis_Contig171:72623..75271+ (Pylaiella littoralis U1_48)
ATGGACCCGAATACTCTGCGCGATGTGGTCTCCGGATCGAAGGAGGGGTC
CGGACCATCGCCAGTCAAGCCGAGAGACGTGTTCATGGGAGTGGATTCAC
CCGCAGAGGATAGCGACGACCGCGCGCATGGAGGTGATTCTCCAACGCCA
ATCCAAGGTCACCCGGATGAATTGGACGATGACAACCTGGAGGGAGAAGA
CTCACAAGATGAGGAGGAACAGGATTTGAATATTCTAGCCCCCGTCGCTG
CAACGCTGAATGAGTACTCAGAGCAGGATGCCGCGGTCGAAGTGCGGGAC
GACGCCGTGGAAAACGTACGGGCGGGTCCTCGTGATGTAGCGTTAGTGAA
AAAAAGCGTAACCGCTTTGCTCGACCAGTTCCCTTGGCTGCAAAGTCTTT
GGGGTATGGTCATGGACCTCCCTCCTACCAAAGATATGATTATGATCTCC
TGGAACTACCTGGTAGACCTTCTCGCCGCTGGCAGAGCACGCAAACCTAC
GACAAGGACGGCTTCCACGTTCACCTTGGCGCGCTTCGAGACATGGCCCG
ACCGGTTAAGGTCGTGGATCAACCACGGCAGTGTTCAGGAAGTAGCGCGC
ACACGCCAGGGCAACCAGGGCACACACTACCTGTGCTGCATCATCAACCT
AGTGGATGAGGAGCTATACCGCGTGTTCGTGGAAGAGAGGGAGAAATCGA
ACACGGTGGCTCTTACCTATCCTGCGACAATCCACAAGATCTCGCCGGCG
CGTGGGAGGATCCTGTATTACGTTGCGGGGTGGTTGCTTAGCAGGGTGTG
GTCGCATAGCAGAAGACACAACATACCCGACCAGGAGTGGGACTTCATTG
TGCAGCACAATCATTCCCCTCCAGTGCGGGCGCCATTGAGAGAGATCCAA
TCCTAA
back to top