mRNA_P-littoralis_Contig170.106.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig170.106.1
Unique NamemRNA_P-littoralis_Contig170.106.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig170.106.1 vs. uniprot
Match: A0A6H5K3S5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3S5_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 1.980e-70
Identity = 130/206 (63.11%), Postives = 142/206 (68.93%), Query Frame = 3 
Query:  333 MMRAVETLRQRLPANVGGSLGYAPVHLSDSEDNNDGCGGGGEFEFAE-RFGGDGFENREGRKIRRRSGSGGSAGGGRERDD----------LLWPPYTPLYTNMKVLRRKRLDASMMYPRAGPCTKICFLTSLWGVSLLTWIGVTLASGSPYIMAKDSATTKMARSSSVFGAAALYFVCACLTGYSWYRSAWGARPLPTMGDRVLP 917
            MMRAVETLRQRLP     SLGYAPV LSDS         G EFE A   FGG   ++R+ R+ RR                          LLWPPYTPLYTNMKVLRRKRLDASMMY RAGPCTKICFLTSLWG S LTW+G TLASGSPYI+ +D   T +ARS SVFGAAA+Y VCACLTGYSWY+S+WGARPLPT+GD  LP
Sbjct:    1 MMRAVETLRQRLPP----SLGYAPVLLSDSXXXXXXXXRG-EFEIAGGNFGGGRHQDRDLRRPRRXXXXXXXXXXXXXXXXXXXXXXXXXXLLWPPYTPLYTNMKVLRRKRLDASMMYSRAGPCTKICFLTSLWGASFLTWLGFTLASGSPYIIPEDPPATNLARSRSVFGAAAMYLVCACLTGYSWYKSSWGARPLPTLGDSTLP 201
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig170.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K3S5_9PHAE1.980e-7063.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig170contigP-littoralis_Contig170:405467..409835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1331
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_002760.1
Cds size588
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789826.8148603-UTR-P-littoralis_Contig170:405466..4058771680789826.8148603-UTR-P-littoralis_Contig170:405466..405877Pylaiella littoralis U1_48UTRP-littoralis_Contig170 405467..405877 -
1680789826.8668473-UTR-P-littoralis_Contig170:406941..4070301680789826.8668473-UTR-P-littoralis_Contig170:406941..407030Pylaiella littoralis U1_48UTRP-littoralis_Contig170 406942..407030 -
1680789826.8794339-UTR-P-littoralis_Contig170:409592..4098351680789826.8794339-UTR-P-littoralis_Contig170:409592..409835Pylaiella littoralis U1_48UTRP-littoralis_Contig170 409593..409835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789826.8454313-CDS-P-littoralis_Contig170:405877..4061281680789826.8454313-CDS-P-littoralis_Contig170:405877..406128Pylaiella littoralis U1_48CDSP-littoralis_Contig170 405878..406128 -
1680789826.8564894-CDS-P-littoralis_Contig170:406604..4069411680789826.8564894-CDS-P-littoralis_Contig170:406604..406941Pylaiella littoralis U1_48CDSP-littoralis_Contig170 406605..406941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig170.106.1prot_P-littoralis_Contig170.106.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig170 405878..406941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig170.106.1

>prot_P-littoralis_Contig170.106.1 ID=prot_P-littoralis_Contig170.106.1|Name=mRNA_P-littoralis_Contig170.106.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=196bp
MMRAVETLRQRLPANVGGSLGYAPVHLSDSEDNNDGCGGGGEFEFAERFG
GDGFENREGRKIRRRSGSGGSAGGGRERDDLLWPPYTPLYTNMKVLRRKR
LDASMMYPRAGPCTKICFLTSLWGVSLLTWIGVTLASGSPYIMAKDSATT
KMARSSSVFGAAALYFVCACLTGYSWYRSAWGARPLPTMGDRVLP*
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mRNA from alignment at P-littoralis_Contig170:405467..409835-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig170.106.1 ID=mRNA_P-littoralis_Contig170.106.1|Name=mRNA_P-littoralis_Contig170.106.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4369bp|location=Sequence derived from alignment at P-littoralis_Contig170:405467..409835- (Pylaiella littoralis U1_48)
TTTCGGAGGCCAGACGGGTACGCGGGTCCAAAAAAAGTGACGGGGCGTAA
CTCTACTCAAAAGTCTCCTGTGTGCTGCCTCGTTGCCTCGAGTCCGGCCT
TGGCCTGGCCTTGTTGACGTACATACAGCACACGCACGCTGTTCCACACC
CGGACTCACTCGAGATCGAAGCGTCAAATTCAGTGTCTTCCCCGGGAATT
GGAGCCCGGAAACGGACGCTGGGTGCCTGCGACAGAGTGTAACGTGAGTT
AATAGCAGCAATACTTTTCCTTCAAAAGCGATACTGCTGTACTTATCTTC
CGCGTGTTGTCACCGTTACTCGCTGCAGCTGCACCCAGGGAGTCATCAGA
CGTGATTCATTCCTCACGTAGAGACGAGAGGGATTGTTTCTTCCAGATTA
CTTGAGTGTTATACCTGTTTTTATGGAATGGAATGCTGTGCTGTGTTTCT
GCGTGTGTGTTGCCCGATCTGTACGGAAAAAATTGCTCCGCAAACTGGAC
GGCAGATTACGGATGGATGTTTTGTACCCTGCTGCTGGTCACGTGTTTCG
TTCAGCTTGGCTCACCAGCAAATGCTACTGTAAATGGGATACATATCATA
CGGAAAGAACTACATGTACGTGAAAATCCCTGTAAGAAACATAGCTGCTA
AAAAATGCCTGGCACGAGGCCTTTTGTCCCATCTTGAAGTTCTTGGAAGT
TTGACCTCTGATGGGGATGATGTGAGGGAGACGTCGCTCCCTATACACAC
ATACACACGCAGGTCTTCATCGTCACCCAGCATCCGTGACACATACCGTC
AAGTACACGACTCGCATATCATATACAAGTACTTGTACTCCGCAGCATAT
TCAGAAGCGGGAGTAGCTTTCTTTCTTGGTGAAATATGTGAAGGGCATGC
TACCGGTACGTGCGTACAAGTACCGGACATACCGAGAGGAAATGGCTGGG
ATTGCGCCGCATTGCTTTTGATCGGAATCCGGAGCACTGCTGCACAGCAG
TAGACAAATTATGCACAAACTAGAAGAGCGTACAGACAAGTGCATATCTT
TGCACAGCCGTGGTGCCGGCGCACTCGTACCGCAGGAAACATCCTCGGAA
GAAACTCATGGCTGATAAGTGATATACTCATGGCAGCTGCAACGCTTCTT
TCGTGAGACAGAATCGTATCACAAGGAGAAGCATCACTCATTCGTGTTCA
TTACTACCGGTACTGCTGGAATCTAAACTAGATTATCCTCTTGAGAGGGA
CGAATACACCTGATATCTTGGAAAGAACAAAAAAACAACTGGTACGAGAA
TACATGGAAGCAAAACAAATGGCTTACGAAATTGGACTCGGCGACCAGCG
CAATGCCGAACTCTGAATTTTGGTCTATGCTCAATGGTGCAGACAAGATA
AGCTCAAAATAAGTGTTCTGCGAGTGGGCAGGTACGCAGGTACTGCGGTA
CGAACCCCCCACCCCCCCCCCTGTGGAGCTTGGTCAAGCTCTGGTTGGTT
GGTTCGAGTTCGTATAGCAGCTGTGTGAGAAAGTGATACGGGAAGCTCCC
ATTCGTGTGAAACCGACCACTCAGCCATCAGGACGACATATCGTCGACTA
TTATCCTACTGTGGCGACTCCACCCCCGTCGGTTACTTTCGCCTCGAAGC
GTTTTTTGTCAGGAGGCGGACCCGATTCCCCCTAGAAAATTTCGTCGAGT
TCCAGGGTAACCGTTGAGCCGAAACACGCACACAACGCAGGACTTTGAAA
ACGAGCTACAGTAGCAAGGATTTGGAGCCAAGGTGCTTCTGAACGTTGCA
GGCTCAGAAGATGCCTGAAAATCGACGGGAAGCCAACGCATTTCTGGTTT
GTTGATTAAACTACTGTTGTGGTGCTGCCAAAATTGAAATAACAAGAGTT
AAAGTTGTCCTGATGGCTTTTTAGATCGTTTCTCTTCCCATTTGTTTTGT
ACGCCATCCTTGCAGCACCTGTGGTGCAGAGGGGCGCTGGGCCGGGGTCG
CGCACAAGGGCCCACCTTCCTGAGCCCTCACCTTCCTTCTGCCACACAAT
CCTCCAATTTTGAACATCATGGCATGAAGCGTCCAGCCTGACGTCTCTTA
TCGTGCATATTGTTAGACGTTAGGCTCCTCTTGTCAAGTACCATAGGTGA
CTGGGGAGGTCAAGAATGAGAACACATGTCGAAAACCACAGGATGGCTTG
TGCTTTTGTCGTAATTTTTTGTGACCAAAATAAGATGAGCGCCACGCAAA
GGAACGCCACAACACGTGCCAAATACCCGTGCCTATCGCCCGTGATACGC
GCGCACATTTGTGCACTGGTGACACATTTGACCAAGCCCCTAGGTCGCAG
TGGAGGTCTGCGAACGTGTAACCGTCATACATACGATGCCGTGCCTCTGG
TTTCCCAACATCTCTGTAACGGCCTTTGATCGATGTTGAGAGGCTGGGCG
TGAAGTGATGCTGTCACCCGTGAACTGCATTTTTTTTTTAACATTCACTT
CGTGGGTGCTGCTTTGCGAATCTTGTGGCACGTCGGGCATCAACTGTAAA
CCTCAGTCGAGAGAGCACGGCCGGCGAATCTTCCTGAAATCTCATTCTGA
CGGGCATGACAATCCACGTTATATTTCTTCTTTCGCTGTGTCCTGAGGCA
CCAACTCCACGGAATTTTCACAAGCGGCGAGTCAACTCCACATGACATCG
CTCGCGCAACTTCTGACCGATAGCAATGTTGAGCACTTGAACGCGAAAAT
GTCCTTCTTGCTCTGATCTTCCTTCCTGTGCCACTCGGCGTCTCTTCAAC
CGCAGAGCCGGCTCCGAATCGCCACCACCACCTACAAAAACAACGGCAGC
AGTAGAAAATATTACTACTCTGAAGTACGGAAAAGCTCGGTCGAATGATG
AGGGCCGTCGAGACGCTGCGGCAGAGGCTGCCTGCCAACGTCGGGGGCTC
GCTGGGATACGCGCCGGTGCACCTCTCCGATAGCGAAGACAACAACGACG
GCTGCGGGGGAGGGGGAGAATTCGAGTTCGCCGAGAGATTCGGTGGCGAC
GGGTTTGAAAACCGCGAAGGCCGAAAGATACGACGAAGATCGGGCAGCGG
GGGGTCGGCGGGGGGAGGGCGAGAGAGGGACGACTTGCTGTGGCCGCCGT
ACACGCCACTCTACACAAATATGAAGGTTTTGCGACGGAAACGGCTGGAT
GCCTCGATGATGTACCCCCGGGCAGGGCCGTGTGAGTTGTTTCAGCGAAG
GGATTGATCGTTTTTTTGCGGCATGTGCGTGATTGGTTGTATGATACCCT
GTATTTATTTCTTAGCGGCCAAAGAAAGTGCGGTTTCGTATGATGTGTGA
TGATGCATTTCCGTTTCCCGGCCTCCGACGGCGCTTGCCGCATGCGTGAA
AAAATGACCGCACCTTCCACCTTTGCGGCGCCTTGTTCGTCCTGCGATGG
AAGTTCGCTCGATACACGTGTTGCTCAACAGTCGGCTGATGCTGTTGTTG
GTGGTGGTGATGTTGTTTGTGGTGTTCACTGTTGGTGAAGCGGTCTCTTT
TTGTTTTTTCCTTGCTTGTCTCGAGTCGTGTCACTGCGGTCCGCTTCCAC
CATAACCTCCCTAGAAGTAAAACGAGTACCCACGCCAGACACCCATCCAA
CAAACCCCATCCACCCCCCCCCCCCACTCCCCCCCTCGCGCGCGCATACA
CCCACAGGTACGAAAATTTGTTTTTTGACGTCTCTTTGGGGCGTGTCCCT
CCTCACGTGGATCGGCGTTACCCTCGCGAGTGGCTCGCCCTACATCATGG
CGAAGGACAGCGCGACCACGAAGATGGCGCGCTCATCCTCCGTGTTCGGC
GCGGCCGCCCTGTATTTTGTCTGCGCGTGTCTGACCGGGTACTCGTGGTA
CAGATCGGCGTGGGGGGCGAGACCGTTACCGACGATGGGGGATAGGGTCT
TACCGTAGCAGCGGTAGTCTCGTGGACGTGTTGCGTGCTGTCTTACTCAC
ACGCAGCGCATACGGGGGACTAGCTCCTAGGGCGTCTCGGTTTATAGAGC
ATTGTATAGAGCTCCAGCTGTTACGGCGCCTTGTTTATATGATTTGTGCC
GATTCACGATGTTATGCAAGAACCCCCGTATCTTTCTCCGTTTGGAGCTA
GGTTTGAATCCATTACTATGAGCTGCTACATGGACCTCACCGACCACAAG
GGATGCAAGCTTGTGAGAGTAGTCAACACCGTCCTGTCTTGCGCAACGAG
GGCTAGGTTGCAGCTCCTGCGGCTGTAAAATCTTGCTTGAAGCATGATTT
GTCGTTGCTGGTTTTCGACGAAAAACAAGGTTTTTCGCCGCTTCGCCATA
TCTTCTTCGAAATACCACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig170:405467..409835-

>mRNA_P-littoralis_Contig170.106.1 ID=mRNA_P-littoralis_Contig170.106.1|Name=mRNA_P-littoralis_Contig170.106.1|organism=Pylaiella littoralis U1_48|type=CDS|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig170:405467..409835- (Pylaiella littoralis U1_48)
ATGATGAGGGCCGTCGAGACGCTGCGGCAGAGGCTGCCTGCCAACGTCGG
GGGCTCGCTGGGATACGCGCCGGTGCACCTCTCCGATAGCGAAGACAACA
ACGACGGCTGCGGGGGAGGGGGAGAATTCGAGTTCGCCGAGAGATTCGGT
GGCGACGGGTTTGAAAACCGCGAAGGCCGAAAGATACGACGAAGATCGGG
CAGCGGGGGGTCGGCGGGGGGAGGGCGAGAGAGGGACGACTTGCTGTGGC
CGCCGTACACGCCACTCTACACAAATATGAAGGTTTTGCGACGGAAACGG
CTGGATGCCTCGATGATGTACCCCCGGGCAGGGCCGTGTACGAAAATTTG
TTTTTTGACGTCTCTTTGGGGCGTGTCCCTCCTCACGTGGATCGGCGTTA
CCCTCGCGAGTGGCTCGCCCTACATCATGGCGAAGGACAGCGCGACCACG
AAGATGGCGCGCTCATCCTCCGTGTTCGGCGCGGCCGCCCTGTATTTTGT
CTGCGCGTGTCTGACCGGGTACTCGTGGTACAGATCGGCGTGGGGGGCGA
GACCGTTACCGACGATGGGGGATAGGGTCTTACCGTAG
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