mRNA_P-littoralis_Contig17.66.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.66.1
Unique NamemRNA_P-littoralis_Contig17.66.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:310407..310944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size538
Hectar predicted targeting categorymitochondrion
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789813.2689273-UTR-P-littoralis_Contig17:310406..3105441680789813.2689273-UTR-P-littoralis_Contig17:310406..310544Pylaiella littoralis U1_48UTRP-littoralis_Contig17 310407..310544 -
1680789813.28722-UTR-P-littoralis_Contig17:310844..3109441680789813.28722-UTR-P-littoralis_Contig17:310844..310944Pylaiella littoralis U1_48UTRP-littoralis_Contig17 310845..310944 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789813.2782643-CDS-P-littoralis_Contig17:310544..3108441680789813.2782643-CDS-P-littoralis_Contig17:310544..310844Pylaiella littoralis U1_48CDSP-littoralis_Contig17 310545..310844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.66.1prot_P-littoralis_Contig17.66.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 310545..310844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.66.1

>prot_P-littoralis_Contig17.66.1 ID=prot_P-littoralis_Contig17.66.1|Name=mRNA_P-littoralis_Contig17.66.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MLRSISRNFHPRYGAFFSGSSGGLCFRTRKQRRQTPYYLVCVSRHSWLWR
VFVLSSNFPVSLRYQCFMNGADTLVSFTYYLYSSPEGEMFPVDSDSSTD*
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mRNA from alignment at P-littoralis_Contig17:310407..310944-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.66.1 ID=mRNA_P-littoralis_Contig17.66.1|Name=mRNA_P-littoralis_Contig17.66.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=538bp|location=Sequence derived from alignment at P-littoralis_Contig17:310407..310944- (Pylaiella littoralis U1_48)
CCGGTACTGTATGGGGGACGGGCATGCGCACCTCATGAGGCTGGTTTCGA
AAGAAGGTGTCACATACACAAATGGATCAACAGGTACTATGCAGTAGGCA
ATGCTCAGAAGTATTTCCAGGAATTTTCACCCGCGCTATGGTGCGTTTTT
CTCGGGGTCAAGTGGTGGGTTGTGTTTCAGAACCCGAAAGCAACGTCGGC
AAACGCCTTATTACTTGGTTTGTGTCTCCAGGCACAGCTGGCTGTGGAGA
GTTTTTGTTTTATCCTCTAATTTTCCCGTGTCACTACGGTATCAGTGCTT
CATGAATGGAGCGGATACCCTTGTTTCCTTTACTTATTACTTGTATAGCT
CACCAGAGGGGGAGATGTTTCCTGTCGATTCCGATAGCTCAACGGATTAG
GGCAGGTGTACTACTACTACCGTAGGAATTTGCCAGGTGTTGGGTGTTTT
TTTCTCAAAAGGTTTCGAAGTAGAATCGTTTCAAGGTATCGGCCAAAAAA
CGGAAACCAGAGGTCAGCCTTGTTTCCTTCACAACGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:310407..310944-

>mRNA_P-littoralis_Contig17.66.1 ID=mRNA_P-littoralis_Contig17.66.1|Name=mRNA_P-littoralis_Contig17.66.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig17:310407..310944- (Pylaiella littoralis U1_48)
ATGCTCAGAAGTATTTCCAGGAATTTTCACCCGCGCTATGGTGCGTTTTT
CTCGGGGTCAAGTGGTGGGTTGTGTTTCAGAACCCGAAAGCAACGTCGGC
AAACGCCTTATTACTTGGTTTGTGTCTCCAGGCACAGCTGGCTGTGGAGA
GTTTTTGTTTTATCCTCTAATTTTCCCGTGTCACTACGGTATCAGTGCTT
CATGAATGGAGCGGATACCCTTGTTTCCTTTACTTATTACTTGTATAGCT
CACCAGAGGGGGAGATGTTTCCTGTCGATTCCGATAGCTCAACGGATTAG
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